BAC Information

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BAC

Clone NameB6Ng01-167C01
Chromosome9 (Build37)
Map Location 40,115,862 - 40,258,881
singlet/doubletdoublet
Overlap geneGramd1b
Upstream geneOlfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b
Downstream geneLOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167C01.bB6Ng01-167C01.g
ACCDH958708DH958709
length1,029473
definitionDH958708|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C01, 5' end.DH958709|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,257,853 - 40,258,881)(40,115,862 - 40,116,340)
sequence
gaattccgtgagaaaatcggggatcaggcaatgccatgtctcccaggatg
tatcttatgaaaggagaaagacagctgacaagtgacaagtgaattgggcc
atgcgaaactgcagcctgtctttctggtgaacacagaagaatttctttgc
ttgtctcccttggacacaatcctgactatgatggtctagattacctctca
ctcagccatcctgcacccttttctatgggacaaccttacccttagcatct
gctcacaggctagcaagctagctactagtttttgtttagctccacatctg
acctttagtaatggtttgcaccagttctgcccaacctggtgtgttagcgt
aactctagggggctgtgctaactggatggcggtttgcaggtttatatctt
tgctgtttatcttgattctccgtctctctgacagttggaggaagagttgc
ttcaaatttcaggcagtttgcagggagcagggtgagcttgttcatccaga
cgtctactcaatcagcctcgatttggttattctttatatagttatctatt
cagccctgctctgtgtggtagagaaaaaaaactctcatccctctttaaca
caaagcaacaaatccatgcaaagggactgtgaatggttaacgacgtacaa
cgtgagcaatcaactcaggatagggttaagaagggaagacttctacccgt
cccataattccttgaggctgggagtgagtcttattttgtgccaagtttcc
tgctaagtgtcttaaatacatgatcattgttaatcctcatgacaaacccg
tggggtaggcttcgtggggggaagaggctgcggtaggagagattaacttg
ttcctggtctaacaagagcaaggctaggaggtgaactctgtgcttgtgcc
agtgccgagttctttagagtctgtgctactgggcctcacatgcttgagaa
gtgtagtgtggaggagctgcttgtgcagatgggtattcacagacagggaa
gctgctgggccagtttggtgtgagtgggg
aggggctcaccttcatcgtgggtatctgaagaatcactgagctcggtggg
gatatcctcattgtcattgaagtccagcgaaggggaggtcacaggcgcca
tgatctcgatcttctcccctatgatgttgtcaatggcaagctccttctct
agggaaccatccccctccatcacctcctcctccaatggcaagccatcaaa
ctgcagtggaatcaagaataacccatcagcccccaatggaggagctagag
aaagtacccaaggagctaaggggaactgcaaccctataggtggaacaaca
atatgaactaaccagtaccctggagctcttgactctagctacatatgtac
cagaagatgacctagtcggccatcactggaaagagaggcccattggtcat
gcaaactttatatgcctcagtacaggggaacaccagggccaaaaagtggg
agtgggtgggtaggggagtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40257853_40258881
seq2: B6Ng01-167C01.b_45_1073 (reverse)

seq1  CCCCAC-----CCAAACTGGCCCAGCAGCTTCCCCTGTCTTGTGAATACC  45
      ||||||     |||||||||||||||||||| ||||||| ||||||||||
seq2  CCCCACTCACACCAAACTGGCCCAGCAGCTT-CCCTGTC-TGTGAATACC  48

seq1  CATCTTGCACAAGCAGCTCCTCCACACCTACACCTTCTCAAGCATGTGAG  95
      |||| ||||||||||||||||||||| ||||| |||||||||||||||||
seq2  CATC-TGCACAAGCAGCTCCTCCACA-CTACA-CTTCTCAAGCATGTGAG  95

seq1  G-CCAGTAGCACAGAACTCTAAAGAACTCGGCACTGGCACAAGCACAGAG  144
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCCAGTAGCACAG-ACTCTAAAGAACTCGGCACTGGCACAAGCACAGAG  144

seq1  TTCACCTCCTAGCCTTGCTCTTGTTAGACCAGGAACAAGTTAATCTCTCC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCCTAGCCTTGCTCTTGTTAGACCAGGAACAAGTTAATCTCTCC  194

seq1  TACCGCAGCCTCTTCCCCCCACGAAGCCTACCCCACGGGTTTGTCATGAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCAGCCTCTTCCCCCCACGAAGCCTACCCCACGGGTTTGTCATGAG  244

seq1  GATTAACAATGATCATGTATTTAAGACACTTAGCAGGAAACTTGGCACAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACAATGATCATGTATTTAAGACACTTAGCAGGAAACTTGGCACAA  294

seq1  AATAAGACTCACTCCCAGCCTCAAGGAATTATGGGACGGGTAGAAGTCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACTCACTCCCAGCCTCAAGGAATTATGGGACGGGTAGAAGTCTT  344

seq1  CCCTTCTTAACCCTATCCTGAGTTGATTGCTCACGTTGTACGTCGTTAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTAACCCTATCCTGAGTTGATTGCTCACGTTGTACGTCGTTAAC  394

seq1  CATTCACAGTCCCTTTGCATGGATTTGTTGCTTTGTGTTAAAGAGGGATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAGTCCCTTTGCATGGATTTGTTGCTTTGTGTTAAAGAGGGATG  444

seq1  AGAGTTTTTTTTCTCTACCACACAGAGCAGGGCTGAATAGATAACTATAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTTTTTCTCTACCACACAGAGCAGGGCTGAATAGATAACTATAT  494

seq1  AAAGAATAACCAAATCGAGGCTGATTGAGTAGACGTCTGGATGAACAAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAACCAAATCGAGGCTGATTGAGTAGACGTCTGGATGAACAAGC  544

seq1  TCACCCTGCTCCCTGCAAACTGCCTGAAATTTGAAGCAACTCTTCCTCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGCTCCCTGCAAACTGCCTGAAATTTGAAGCAACTCTTCCTCCA  594

seq1  ACTGTCAGAGAGACGGAGAATCAAGATAAACAGCAAAGATATAAACCTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGAGAGACGGAGAATCAAGATAAACAGCAAAGATATAAACCTGC  644

seq1  AAACCGCCATCCAGTTAGCACAGCCCCCTAGAGTTACGCTAACACACCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGCCATCCAGTTAGCACAGCCCCCTAGAGTTACGCTAACACACCAG  694

seq1  GTTGGGCAGAACTGGTGCAAACCATTACTAAAGGTCAGATGTGGAGCTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCAGAACTGGTGCAAACCATTACTAAAGGTCAGATGTGGAGCTAA  744

seq1  ACAAAAACTAGTAGCTAGCTTGCTAGCCTGTGAGCAGATGCTAAGGGTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTAGTAGCTAGCTTGCTAGCCTGTGAGCAGATGCTAAGGGTAA  794

seq1  GGTTGTCCCATAGAAAAGGGTGCAGGATGGCTGAGTGAGAGGTAATCTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCCCATAGAAAAGGGTGCAGGATGGCTGAGTGAGAGGTAATCTAG  844

seq1  ACCATCATAGTCAGGATTGTGTCCAAGGGAGACAAGCAAAGAAATTCTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATAGTCAGGATTGTGTCCAAGGGAGACAAGCAAAGAAATTCTTC  894

seq1  TGTGTTCACCAGAAAGACAGGCTGCAGTTTCGCATGGCCCAATTCACTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCACCAGAAAGACAGGCTGCAGTTTCGCATGGCCCAATTCACTTG  944

seq1  TCACTTGTCAGCTGTCTTTCTCCTTTCATAAGATACATCCTGGGAGACAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTCAGCTGTCTTTCTCCTTTCATAAGATACATCCTGGGAGACAT  994

seq1  GGCATTGCCTGATCCCCGATTTTCTCACGGAATTC  1029
      |||||||||||||||||||||||||||||||||||
seq2  GGCATTGCCTGATCCCCGATTTTCTCACGGAATTC  1029

seq1: chr9_40115862_40116340
seq2: B6Ng01-167C01.g_68_546

seq1  GAATTCAGGGGCTCACCTTCATCGTGGGTATCTGAAGAATCACTGAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGCTCACCTTCATCGTGGGTATCTGAAGAATCACTGAGCTC  50

seq1  GGTGGGGATATCCTCATTGTCATTGAAGTCCAGCGAAGGGGAGGTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGATATCCTCATTGTCATTGAAGTCCAGCGAAGGGGAGGTCACAG  100

seq1  GCGCCATGATCTCGATCTTCTCCCCTATGATGTTGTCAATGGCAAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCATGATCTCGATCTTCTCCCCTATGATGTTGTCAATGGCAAGCTCC  150

seq1  TTCTCTAGGGAACCATCCCCCTCCATCACCTCCTCCTCCAATGGCAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGGGAACCATCCCCCTCCATCACCTCCTCCTCCAATGGCAAGCC  200

seq1  ATCAAACTGCAGTGGAATCAAGAATAACCCATCAGCCCCCAATGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTGCAGTGGAATCAAGAATAACCCATCAGCCCCCAATGGAGGAG  250

seq1  CTAGAGAAAGTACCCAAGGAGCTAAGGGGAACTGCAACCCTATAGGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAGGGGAACTGCAACCCTATAGGTGGA  300

seq1  ACAACAATATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTACAT  350

seq1  ATGTACCAGAAGATGACCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAGAAGATGACCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  400

seq1  GGTCATGCAAACTTTATATGCCTCAGTACAGGGGAACACCAGGGCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCAAACTTTATATGCCTCAGTACAGGGGAACACCAGGGCCAAAA  450

seq1  AGTGGGAGTGGGTGGGTAGGGGAGTGGGT  479
      |||||||||||||||||||||||||||||
seq2  AGTGGGAGTGGGTGGGTAGGGGAGTGGGT  479