BAC Information

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BAC

Clone NameB6Ng01-167J13
Chromosome9 (Build37)
Map Location 55,057,490 - 55,058,661
singlet/doubletsinglet
Overlap geneFbxo22
Upstream geneLOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2
Downstream geneNrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167J13.b
ACCDH959047
length1,218
definitionDH959047|Mus musculus domesticus DNA, BAC clone: B6Ng01-167J13, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggtggctcttcgagggcctgacttgggtcccaacaattgggta
tgtgtatattggtcacatattcctgtggtttctgttggtcacaaaccctt
aaaacagtgagtacacttaacagaactgacatttcagacttcctgatgta
ccatattccacttgcccacaccgaaattgttgccgtaactactcaggtct
tgtttgaatgatgtgaagtactctttcatcacttctgctttttttctctc
cgtcatcccgttaagacattgaaacggaatagattgctcgatggacaagg
gtgggagtgtgagtaccaaggagagtctaacagtaacaggtacagctcta
cacaagagaccaagcgtatgtatgagtgctgtgtgaacaaagtggaagag
aatgaaaagtaagtttcaaagcttctctacagacaaatacttattaactg
ccacaggacacaaaatttcaaggcagaagtttctggcacacacctcttaa
atcaaggaatttaaggtaatgggataaaaaaatctaataaatcccagtca
cactcaacttgtgccttgaattttcttaagtgttggggctggtacagaaa
gtcaggttggagaaacatacaaaccaaaggagcgcgcctttcagttactc
attgggaacagaatcaaatccttctgctcttaagaaaagcactggggcac
tttggctcccacaccaaacattaatcaagagagtggcctacagatttgtc
cacgggtcaatcttttggcaggcacttaacttgagttccctctttctgga
tcaagttgaaaaccaaactcaacaccaaaagaatcgacacatacatcaat
gataacttcccaatgtggagactatattgtggttaagtagaacattccta
tttgcctattatacatactaagcgataatagggcatcaaattggcaattt
cctcacgagggccctgcccctcagtgagatactggagattcactatctat
cagctctataatctgtcttcacctccctgatcactgactctcatggatca
ggacaaaaaatgagaaatgatgtggtttacgtatttaggtgaagtttagt
cttcggtctagtgtgcgaacctgggcagcgatcccaacccttcatggcaa
ttgaagccagttagagctctgtacggcctggtaatatggacacctggtaa
tcttcacattgcccaact
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55057490_55058661
seq2: B6Ng01-167J13.b_104_1257 (reverse)

seq1  GTTGGGCAAT-TGAAG-TATCCAGGTGTCCACTATTACAAGGCCGTACAG  48
      |||||||||| ||||| |  ||||||||||| |||||| |||||||||||
seq2  GTTGGGCAATGTGAAGATTACCAGGTGTCCA-TATTACCAGGCCGTACAG  49

seq1  AGCCTTCCTTAACTTGCCTCAATTTTGCAATGAAGGTGTTGGGTATCGCT  98
      |||  ||  ||||| || ||||  |||| ||||||| |||||| ||||| 
seq2  AGC--TC--TAACTGGCTTCAA--TTGCCATGAAGG-GTTGGG-ATCGC-  90

seq1  TGCCCAGGGTCTCACACTAGAACCGGAAGAACTAAAACTTCTACCTAAAT  148
      |||||||| || |||||||||  | |||| ||| ||||||| ||||||||
seq2  TGCCCAGGTTCGCACACTAGA--CCGAAG-ACT-AAACTTC-ACCTAAAT  135

seq1  ACGTAAACCACATTCCTTTTCTCATTTTTGTCCCTGGATCCAGGAGAGTC  198
      |||||||||||||  | ||||||||||||   ||| |||||| |||||||
seq2  ACGTAAACCACAT--CATTTCTCATTTTTTGTCCT-GATCCATGAGAGTC  182

seq1  AGTGTTCAGGGAGGTGAAGACAGATTATAGAGCTGATAGATAGTGAATCT  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAGGGAGGTGAAGACAGATTATAGAGCTGATAGATAGTGAATCT  232

seq1  CCAGTATCTCACTGAGTGGCAGGGGCCCTCGTGAGGAAATTGCCAATTTG  298
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  CCAGTATCTCACTGAGGGGCA-GGGCCCTCGTGAGGAAATTGCCAATTTG  281

seq1  ATGCCCTATTATCGCTTAGTATGTATAATAGGCAAATAGGAATGTTCTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTATTATCGCTTAGTATGTATAATAGGCAAATAGGAATGTTCTAC  331

seq1  TTAACCACAATATAGTCTCCACATTGGGAAGTTATCATTGATGTATGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACAATATAGTCTCCACATTGGGAAGTTATCATTGATGTATGTGT  381

seq1  CGATTCTTTTGGTGTTGAGTTTGGTTTTCAACTTGATCCAGAAAGAGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCTTTTGGTGTTGAGTTTGGTTTTCAACTTGATCCAGAAAGAGGGA  431

seq1  ACTCAAGTTAAGTGCCTGCC-AAAGATTGACCCGTGGACAAATCTGTAGG  497
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTCAAGTTAAGTGCCTGCCAAAAGATTGACCCGTGGACAAATCTGTAGG  481

seq1  CCACTCTCTTGATTAATGTTTGGTGTGGGAGCCAAAGTGCCCCAGTGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTTGATTAATGTTTGGTGTGGGAGCCAAAGTGCCCCAGTGCTT  531

seq1  TTCTTAAGAGCAGAAGGATTTGATTCTGTTCCCAATGAGTAACTGAAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGAGCAGAAGGATTTGATTCTGTTCCCAATGAGTAACTGAAAGG  581

seq1  CGCGCTCCTTTGGTTTGTATGTTTCTCCAACCTGACTTTCTGTACCAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTCCTTTGGTTTGTATGTTTCTCCAACCTGACTTTCTGTACCAGCC  631

seq1  CCAACACTTAAGAAAATTCAAGGCACAAGTTGAGTGTGACTGGGATTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTTAAGAAAATTCAAGGCACAAGTTGAGTGTGACTGGGATTTAT  681

seq1  TAGATTTTTTTATCCCATTACCTTAAATTCCTTGATTTAAGAGGTGTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGATTTTTTTATCCCATTACCTTAAATTCCTTGATTTAAGAGGTGTGTG  731

seq1  CCAGAAACTTCTGCCTTTAAATTTTCTGTCCTGTTGCAGTTAATAAGTAT  797
      ||||||||||||||||| ||||||| |||||||| |||||||||||||||
seq2  CCAGAAACTTCTGCCTTGAAATTTTGTGTCCTGTGGCAGTTAATAAGTAT  781

seq1  TTGTCTGTAGAGAAGCTTTGAAACTTACTTTTCATTCTCTTCCACTTTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTAGAGAAGCTTTGAAACTTACTTTTCATTCTCTTCCACTTTGT  831

seq1  TCACACAGCACTCATACATACGCTTGGTCTCTTGTGTAGAGCTGTACCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGCACTCATACATACGCTTGGTCTCTTGTGTAGAGCTGTACCTG  881

seq1  TTACTGTTAGACTCTCCTTGGTACTCACACAGTCTTTGTGTGGCTAGTGA  947
      ||||||||||||||||||||||||||||||   |    | || | |  ||
seq2  TTACTGTTAGACTCTCCTTGGTACTCACACTCCCACCCT-TGTCCATCGA  930

seq1  GCACTCAAGCCAGTTTTATTGTCTCTTAGGGATGACCTTTCTTTTGGCAC  997
      ||| || |  | |||| | |||||    ||||||||            | 
seq2  GCAATCTATTCCGTTTCAATGTCTTAACGGGATGACGGAGAGAAAAAAAG  980

seq1  CAGTTGTCTTCAGCTTGTATTTCACCTGCTTCATTCAAGAACTTAGTAGT  1047
      |||  ||  | |    ||| ||||| |  ||||  ||||| || ||||||
seq2  CAGAAGTGATGAAAGAGTACTTCACATCATTCAAACAAGACCTGAGTAGT  1030

seq1  TTCACTAATAGTCTTGGTTTCTTTTAGTGGAGAATGGTATTTAATTTAGA  1097
      | |   || | | | ||| |     ||||||  ||||||  | |   || 
seq2  TACGGCAACAATTTCGGTGTGGGCAAGTGGAATATGGTACATCAGGAAGT  1080

seq1  CTCTAAGGTCAGTACTGTGTAAGTCTACTCACTGTTTTAAGGGTTTGCTT  1147
      ||  || |||||| |||| ||||| ||||||||||||||||||||||   
seq2  CTGAAATGTCAGTTCTGT-TAAGTGTACTCACTGTTTTAAGGGTTTGTGA  1129

seq1  CCTCTAGCCTAGACAGGAATATGTG  1172
      ||   ||     |||||||||||||
seq2  CCAACAGAAACCACAGGAATATGTG  1154