BAC Information

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BAC

Clone NameB6Ng01-167L11
Chromosome9 (Build37)
Map Location 73,537,167 - 73,708,113
singlet/doubletdoublet
Overlap geneUnc13c
Upstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167L11.bB6Ng01-167L11.g
ACCDH959137DH959138
length1,1201,110
definitionDH959137|Mus musculus domesticus DNA, BAC clone: B6Ng01-167L11, 5' end.DH959138|Mus musculus domesticus DNA, BAC clone: B6Ng01-167L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,706,974 - 73,708,113)(73,537,167 - 73,538,294)
sequence
gaattctgccatcggctgaatttctttctctgaggacacgtgtcacctgt
aatatcatgtagttatcctctgcttaacccaagggaatccattcctaaaa
atggaactattcagaattgcagggaatgatgcatctgtacgggcctctgc
ttgtggatcttctccttcatgttgaagattctcttcaggcatgagaatag
acctttcagttacaatttatttctatagaataacaaaaagtgctcaaaaa
aaaaaaaaggaatgagaactcctgcttatctaggcaggcatatggtggaa
aggaagaagtagagactggagagagatagcacagaggtcaaagcacctct
gctctttcatagaacctggatttggttctcagcacccatatcaggtgtca
cacaactgtgtgaacctttagtatcagaggctctgatgcgtgcttctggc
cttcataggctcctgtatgttcttgatgcaaataaagtcaggcacacaaa
acacccacatatacatcaccaccaccaccatcatcatcatcataatcttg
ttttattttcttctagaaagcatcttaccatgcagctctggctgtcttgg
aactcactatgtaggccaggccggccttgacctcatagagagccatctgc
tctgtgtcccgagtgctgggattaaaagtgtgcttcactactgcaggcta
taataataaagctttaaaataagaatacatgtatgtgtcaaaatgctttg
tgtatttttgtaatcctcaaaataatcttatgagatgatgaccccagttt
cctagagagggaaagagagacatagaaaaaaaaggccactcacatctaga
aatggcaacttgaggatcaaatcctacattctggctcaatttcacacttt
taatcattgtgctatgtgtagccagccataaaggttactctgcacattgt
caaactgcaaaatgttgtagaatacagaatagaaattactcaaccctttc
tcatcagatatgatctgagagacgaagggtacacagattgatagagcact
caagattccattttgtgctagtccctagattaaacgaattacatctggct
tggagtgagacttgattctg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactgaaagtttattttca
attatacaggatcagtgtggtatgaaccgaatttcaacacaacttacaga
gtgatggagtcccagacatcaatttcattaaattcaacctttctcctcta
tttgcttttggcaattgaagatctctaacacccagcgataggtcaggaga
aagtgaggctcaaaaataatgtcggtaggaacctctacttctggttccct
ctattgcaaatatgtattgagtttctagtgtgcattcagaacttccaatc
cagtgaagtaaaagtggtgattcaagatttccatctacgccactttattt
agaattcaagttagatctaagccgctcactgtactatatttcttaaatat
aagtatagtttttaactgtgctgacatattgacatataattagaggcctg
tatctgtttataaaaccaattaatttctagcaccaatcacgcagatcagt
aatatgagcaagcaaagagtctgtactttcggaattattagattgtttca
agcatacattttctttcttctggtatggtaatggcaaatttgtattgcca
agcaaaatctttcctggacatattaatgagaaagtgcgcagtagcatctc
ctccatatatatatatatatcctttaaatgagctgaaaggcttagtcagt
aaggcactgctgacaactcaatatccagttgattccaagaccacatggtg
aagggagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73706974_73708113
seq2: B6Ng01-167L11.b_47_1166 (reverse)

seq1  CAGAATCAAGTCTCACTTCTCAGAGCAGATGTATCTGTTTAAATCCTAGG  50
      |||||||||||||||||   ||   ||||||||  |  || ||| ||| |
seq2  CAGAATCAAGTCTCACT--CCAAGCCAGATGTAATTCGTTTAAT-CTA-G  46

seq1  GGACTTAGCACAAAAATGGAATCTTTGAGGTTGCTCTAATCAAATCCTGT  100
      |||| |||||| ||||||||||| |||||  |||||| |||||   ||||
seq2  GGAC-TAGCAC-AAAATGGAATC-TTGAG--TGCTCT-ATCAA--TCTGT  88

seq1  GTTACCCCTTCGTCTCTCAGATCAATATCTGGATGGAAGAAAGGGTTGAG  150
      ||   |||||||||||||||||| |||||| ||||  |||||||||||||
seq2  GT--ACCCTTCGTCTCTCAGATC-ATATCT-GATG--AGAAAGGGTTGAG  132

seq1  TAATTTCTATTCTGTTATTCTACAACATTTTGCAGTTTGACAATGTGCAG  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAATTTCTATTCTG-TATTCTACAACATTTTGCAGTTTGACAATGTGCAG  181

seq1  AGTAACCTTTATGGCTGGCTACACATAGCACAAATGATTAAAAGTGTGAA  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTAACCTTTATGGCTGGCTACACATAGCAC-AATGATTAAAAGTGTGAA  230

seq1  ATTGAGCCAGAATGTAGGATTTGATCCTCAAGTTGCCATTTCTAGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCCAGAATGTAGGATTTGATCCTCAAGTTGCCATTTCTAGATGTG  280

seq1  AGTGGCCTTTTTTTTCTATGTCTCTCTTTCCCTCTCTAGGAAACTGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTTTTTTTTCTATGTCTCTCTTTCCCTCTCTAGGAAACTGGGGT  330

seq1  CATCATCTCATAAGATTATTTTGAGGATTACAAAAATACACAAAGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTCATAAGATTATTTTGAGGATTACAAAAATACACAAAGCATTT  380

seq1  TGAAACATACATGTATTCTTATTTTAAAGCTTTATTATTATAGCCTGCAG  450
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATACATGTATTCTTATTTTAAAGCTTTATTATTATAGCCTGCAG  430

seq1  TAGTGAAGCACACTTTTAATCCCAGCACTCGGGACACAGAGCAGATGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGCACACTTTTAATCCCAGCACTCGGGACACAGAGCAGATGGCT  480

seq1  CTCTATGAGGTCAAGGCCGGCCTGGCCTACATAGTGAGTTCCAAGACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAGGTCAAGGCCGGCCTGGCCTACATAGTGAGTTCCAAGACAGC  530

seq1  CAGAGCTGCATGGTAAGATGCTTTCTAGAAGAAAATAAAACAAGATTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGCATGGTAAGATGCTTTCTAGAAGAAAATAAAACAAGATTATG  580

seq1  ATGATGATGATGGTGGTGGTGGTGATGTATATGTGGGTGTTTTGTGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGATGGTGGTGGTGGTGATGTATATGTGGGTGTTTTGTGTGCC  630

seq1  TGACTTTATTTGCATCAAGAACATACAGGAGCCTATGAAGGCCAGAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTATTTGCATCAAGAACATACAGGAGCCTATGAAGGCCAGAAGCA  680

seq1  CGCATCAGAGCCTCTGATACTAAAGGTTCACACAGTTGTGTGACACCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCAGAGCCTCTGATACTAAAGGTTCACACAGTTGTGTGACACCTGA  730

seq1  TATGGGTGCTGAGAACCAAATCCAGGTTCTATGAAAGAGCAGAGGTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGCTGAGAACCAAATCCAGGTTCTATGAAAGAGCAGAGGTGCTT  780

seq1  TGACCTCTGTGCTATCTCTCTCCAGTCTCTACTTCTTCCTTTCCACCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTGTGCTATCTCTCTCCAGTCTCTACTTCTTCCTTTCCACCATA  830

seq1  TGCCTGCCTAGATAAGCAGGAGTTCTCATTCCTTTTTTTTTTTTTGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTAGATAAGCAGGAGTTCTCATTCCTTTTTTTTTTTTTGAGCA  880

seq1  CTTTTTGTTATTCTATAGAAATAAATTGTAACTGAAAGGTCTATTCTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTATTCTATAGAAATAAATTGTAACTGAAAGGTCTATTCTCAT  930

seq1  GCCTGAAGAGAATCTTCAACATGAAGGAGAAGATCCACAAGCAGAGGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAGAGAATCTTCAACATGAAGGAGAAGATCCACAAGCAGAGGCCC  980

seq1  GTACAGATGCATCATTCCCTGCAATTCTGAATAGTTCCATTTTTAGGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATGCATCATTCCCTGCAATTCTGAATAGTTCCATTTTTAGGAAT  1030

seq1  GGATTCCCTTGGGTTAAGCAGAGGATAACTACATGATATTACAGGTGACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCCTTGGGTTAAGCAGAGGATAACTACATGATATTACAGGTGACA  1080

seq1  CGTGTCCTCAGAGAAAGAAATTCAGCCGATGGCAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTCAGAGAAAGAAATTCAGCCGATGGCAGAATTC  1120

seq1: chr9_73537167_73538294
seq2: B6Ng01-167L11.g_67_1176

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA  250

seq1  GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC  300

seq1  ATATATCCAGAAGAAGTCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAGAAGAAGTCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350

seq1  GTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGAAAGTTTATTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGAAAGTTTATTTTCA  400

seq1  ATTATACAGGATCAGTGTGGTATGAACCGAATTTCAACACAACTTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAGGATCAGTGTGGTATGAACCGAATTTCAACACAACTTACAGA  450

seq1  GTGATGGAGTCCCAGACATCAATTTCATTAAATTCAACCTTTCTCCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGAGTCCCAGACATCAATTTCATTAAATTCAACCTTTCTCCTCTA  500

seq1  TTTGCTTTTGGCAATTGAAGATCTCTAACACCCAGCGATAGGTCAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGGCAATTGAAGATCTCTAACACCCAGCGATAGGTCAGGAGA  550

seq1  AAGTGAGGCTCAAAAATAATGTCGGTAGGAACCTCTACTTCTGGTTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGCTCAAAAATAATGTCGGTAGGAACCTCTACTTCTGGTTCCCT  600

seq1  CTATTGCAAATATGTATTGAGTTTCTAGTGTGCATTCAGAACTTCCAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAAATATGTATTGAGTTTCTAGTGTGCATTCAGAACTTCCAATC  650

seq1  CAGTGAAGTAAAAGTGGTGATTCAAGATTTCCATCTACGCCACTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGTAAAAGTGGTGATTCAAGATTTCCATCTACGCCACTTTATTT  700

seq1  AGAATTCAAGTTAGATCTAAGCCGCTCACTGTACTATATTTCTTAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAAGTTAGATCTAAGCCGCTCACTGTACTATATTTCTTAAATAT  750

seq1  AAGTATAGTTTTTAACTGTGCTGACATATTGACATATAATTAGAGGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGTTTTTAACTGTGCTGACATATTGACATATAATTAGAGGCCTG  800

seq1  TATCTGTTTATAAAACCAATTAATTTCTAGCACCAATCACGCAGATCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTATAAAACCAATTAATTTCTAGCACCAATCACGCAGATCAGT  850

seq1  AATATGAGCAAGCAAAGAGTCTGTACTTTCGGAATTATTAGATTGTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGCAAGCAAAGAGTCTGTACTTTCGGAATTATTAGATTGTTTCA  900

seq1  AGCAATACA-TTTCTTTCTTCTGGTATGGTAATGGCAAATTTTGTATTGC  949
      ||| ||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AGC-ATACATTTTCTTTCTTCTGGTATGGTAATGGCAAA-TTTGTATTGC  948

seq1  CAAAGCAAAATCTTTCCTGGACAATATTAATGAGGAAAAGTGCGCAGTAG  999
      | |||||||||||||||||||| |||||||||||  ||||||||||||| 
seq2  C-AAGCAAAATCTTTCCTGGAC-ATATTAATGAG--AAAGTGCGCAGTA-  993

seq1  GCATCTCCTCCATATATATATATATATCCTTTAAATGAGCTGGAAAAAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GCATCTCCTCCATATATATATATATATCCTTTAAATGAGCTG---AAAGG  1040

seq1  CTTAGTCAGTAAAGGCACTGGCTGACAAACTCAATAATCCAAGTTTGATT  1099
      |||||||||| |||||||| |||||| |||||||| |||||   ||||||
seq2  CTTAGTCAGT-AAGGCACT-GCTGAC-AACTCAAT-ATCCA--GTTGATT  1084

seq1  CCCAAGACCACATGGTGGAAGGAGAGAAC  1128
       ||||||||||||||| ||||| ||||||
seq2  -CCAAGACCACATGGT-GAAGG-GAGAAC  1110