BAC Information

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BAC

Clone NameB6Ng01-168E04
Chromosome9 (Build37)
Map Location 52,274,716 - 52,401,995
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E04.bB6Ng01-168E04.g
ACCDH959543DH959544
length1,2031,028
definitionDH959543|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E04, 5' end.DH959544|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,400,788 - 52,401,995)(52,274,716 - 52,275,466)
sequence
gaattcactctgtagaccaggctggcctcaaactcagaaatctgcctgcc
tctgcctcccaagtgctgggattaaaggtgtgcaccgccactgcccagtc
agagttatttctaataagacaatgtttatatgcttagaatatatccaagt
ggagacaaatttcagaagcaaagaggattaagtagaacagcatatattgt
gtattataaaataccaatctcaaacctttcactgtggtaatgacttcttt
ctgctatcaataccaagcagaattgacagaaatttatagctggcacacac
atttgtgaagagaaagttgagagccggatgccaacttaggaaagatatta
tttaataatgtttctccagcaagaagcttcctaaaacgcaagtaattgcc
acttgtggcttaattattccattttctcaagagcccattttggagctaaa
gtatgcatattggatagtgattaaccttcaatagtgaagcagaggacacc
aaatagattgtttaagcatctcccttctcaaaatgccacgaaagtgaatt
aaaattccaatttctattcatggattagagcaaattgctcattatggtca
ggcagatagagacctcgagaaaagtgggaggtcaccagttaaaaacgact
gtctgcaaggaggcctctgtcagtgggaagtggggacggtgagcggatgg
aggtcttcactggcaaatgcctcaacttccttgtgattagatttcccatg
atcccacacaccctgttacttcatccttgcctgatctgaaactgatgtgt
ggccaccacacagccctcattgtctcatctttgtcccctgcccttgatat
tatgtatcttcaagataaccagaggattcaatgggacaattagagtttgt
ttgcttactaaagtaccattctgtcacaaaatatattttttgtaccttta
tggtgacagaggcatgtggtagtcgttggctgagataagtaaaccaaaaa
gaattaaatgtggctaaaggtgggactctggtatcagaatacccactgag
agctgtggtgtctcagcaggacttcccttcttggtgccttaataataacg
gcagtttccatctctttgacttgtttggagtactaggtgaggtgcctgac
gcctattggaattgctactgtaaaagttcagacaactggtaatttggtgt
agg
gaattctctttctttccctcttgccttttccatttcctgttctccgtcca
ctcttgccctgtctctcctttatttattcttctttctccaatctctcttc
tacccatacctctaccaggagcaagaaagtacctatatctggggagacac
ttatctctaaatcaactgcaacgaataatctcaacacaaacttacaaatt
aaacaggcttgaattcaaatcctgtggctgtctttgcattgacataagca
attgcaggcatcctctccttggctgggttctggcacgcagggcactctgt
ggccataattttgctaaataattaaacttccaacagtatggttcaaatat
cagccatcacatatattaactgtgaataattccataaagtacaactttta
cagccagatctgtagtccacaaatcaacagccaagtaacagatagacatt
atgatcagtgaccaagccaatctatcatgactttcaaagactactgtggt
tggtcatcatatgtgttgctcagttcaggcagagatagtgaagggtaata
ttgtgttgtcttctcatttcctgataataactctgaaagacatcttccaa
actagataattcagagagtgagttaaccatgaaaaaagtgagaccaatag
ggtgaaattctaacagttaataattgaaaattattgacagaagggtcagc
tctggagatgctgatgtttacatcattcaagagcgaatctagatgaactg
gaagacttcacgaaggtgaacttgtggaaaggaaatgaagaaaggggtca
tgatgtaaactatgatgtcccagaaagaacgaggtcatcattaaagggta
tcagagtgacattttgcaacattaaataagtaaaaagatgagacagtaga
agatcatggaaacacaaatgaagaaagactgttcccacagcacagaacta
tgtcataagctatgtgatagaaactatcactgctcaaactactatcataa
ctttaaaggttcatttatttttatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52400788_52401995
seq2: B6Ng01-168E04.b_44_1246 (reverse)

seq1  CCTACCACCAAAATACAGTTTGTCTGAACTATTTTACAGTAGCAATACCA  50
      |||| ||||||| |||   ||||||||||  ||||||||||||||| |||
seq2  CCTA-CACCAAATTACCAGTTGTCTGAAC--TTTTACAGTAGCAATTCCA  47

seq1  ATAGGCGTCAGCAACCTCA-CTAGTACT-CAAACAGTCCAAAGAGATGGG  98
      |||||||||||  |||||| |||||||| ||||||   ||||||||||| 
seq2  ATAGGCGTCAGGCACCTCACCTAGTACTCCAAACAAGTCAAAGAGATGGA  97

seq1  AACTGGCGTTATTATTACAGGGCACCAAGAAGGGAAGTCCTGCTGAGACA  148
      ||||| ||||||||||  | ||||||||||||||||||||||||||||||
seq2  AACTGCCGTTATTATT--AAGGCACCAAGAAGGGAAGTCCTGCTGAGACA  145

seq1  -CACAGCTTCTCAGTGGGTATTCTGATACCAGAGTCCCACCTTTAGCCAC  197
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGC-TCTCAGTGGGTATTCTGATACCAGAGTCCCACCTTTAGCCAC  194

seq1  ATTTAATTCTTTTTGGTTTTACCTTATCTCAGCCCAACGACTACCACATG  247
      |||||||||||||||||||   |||||||||| |||||||||||||||||
seq2  ATTTAATTCTTTTTGGTTT--ACTTATCTCAG-CCAACGACTACCACATG  241

seq1  CCTCTGTCACCATAAAGGTAC-AAAAATATATTTTGTGACAGAATGGTAC  296
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTCTGTCACCATAAAGGTACAAAAAATATATTTTGTGACAGAATGGTAC  291

seq1  TTTAGTAAGCAAACAAACTCTAATTGTCCCATTGAATCCTCTGGTTATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAGCAAACAAACTCTAATTGTCCCATTGAATCCTCTGGTTATCT  341

seq1  TGAAGATACATAATATCAAGGGCAGGGGACAAAGATGAGACAATGAGGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATACATAATATCAAGGGCAGGGGACAAAGATGAGACAATGAGGGC  391

seq1  TGTGTGGTGGCCACACATCAGTTTCAGATCAGGCAAGGATGAAGTAACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGGCCACACATCAGTTTCAGATCAGGCAAGGATGAAGTAACAG  441

seq1  GGTGTGTGGGATCATGGGAAATCTAATCACAAGGAAGTTGAGGCATTTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGGGATCATGGGAAATCTAATCACAAGGAAGTTGAGGCATTTGC  491

seq1  CAGTGAAGACCTCCATCCGCTCACCGTCCCCACTTCCCACTGACAGAGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGACCTCCATCCGCTCACCGTCCCCACTTCCCACTGACAGAGGC  541

seq1  CTCCTTGCAGACAGTCGTTTTTAACTGGTGACCTCCCACTTTTCTCGAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCAGACAGTCGTTTTTAACTGGTGACCTCCCACTTTTCTCGAGG  591

seq1  TCTCTATCTGCCTGACCATAATGAGCAATTTGCTCTAATCCATGAATAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTGCCTGACCATAATGAGCAATTTGCTCTAATCCATGAATAGA  641

seq1  AATTGGAATTTTAATTCACTTTCGTGGCATTTTGAGAAGGGAGATGCTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAATTTTAATTCACTTTCGTGGCATTTTGAGAAGGGAGATGCTTA  691

seq1  AACAATCTATTTGGTGTCCTCTGCTTCACTATTGAAGGTTAATCACTATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTATTTGGTGTCCTCTGCTTCACTATTGAAGGTTAATCACTATC  741

seq1  CAATATGCATACTTTAGCTCCAAAATGGGCTCTTGAGAAAATGGAATAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGCATACTTTAGCTCCAAAATGGGCTCTTGAGAAAATGGAATAAT  791

seq1  TAAGCCACAAGTGGCAATTACTTGCGTTTTAGGAAGCTTCTTGCTGGAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACAAGTGGCAATTACTTGCGTTTTAGGAAGCTTCTTGCTGGAGA  841

seq1  AACATTATTAAATAATATCTTTCCTAAGTTGGCATCCGGCTCTCAACTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTAAATAATATCTTTCCTAAGTTGGCATCCGGCTCTCAACTTT  891

seq1  CTCTTCACAAATGTGTGTGCCAGCTATAAATTTCTGTCAATTCTGCTTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACAAATGTGTGTGCCAGCTATAAATTTCTGTCAATTCTGCTTGG  941

seq1  TATTGATAGCAGAAAGAAGTCATTACCACAGTGAAAGGTTTGAGATTGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAGCAGAAAGAAGTCATTACCACAGTGAAAGGTTTGAGATTGGT  991

seq1  ATTTTATAATACACAATATATGCTGTTCTACTTAATCCTCTTTGCTTCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATACACAATATATGCTGTTCTACTTAATCCTCTTTGCTTCTG  1041

seq1  AAATTTGTCTCCACTTGGATATATTCTAAGCATATAAACATTGTCTTATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTCTCCACTTGGATATATTCTAAGCATATAAACATTGTCTTATT  1091

seq1  AGAAATAACTCTGACTGGGCAGTGGCGGTGCACACCTTTAATCCCAGCAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAACTCTGACTGGGCAGTGGCGGTGCACACCTTTAATCCCAGCAC  1141

seq1  TTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTA  1191

seq1  CAGAGTGAATTC  1208
      ||||||||||||
seq2  CAGAGTGAATTC  1203

seq1: chr9_52274716_52275466
seq2: B6Ng01-168E04.g_66_816

seq1  GAATTCTCTTTCTTTCCCTCTTGCCTTTTCCATTTCCTGTTCTCCGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTTCCCTCTTGCCTTTTCCATTTCCTGTTCTCCGTCCA  50

seq1  CTCTTGCCCTGTCTCTCCTTTATTTATTCTTCTTTCTCCAATCTCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCCTGTCTCTCCTTTATTTATTCTTCTTTCTCCAATCTCTCTTC  100

seq1  TACCCATACCTCTACCAGGAGCAAGAAAGTACCTATATCTGGGGAGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATACCTCTACCAGGAGCAAGAAAGTACCTATATCTGGGGAGACAC  150

seq1  TTATCTCTAAATCAACTGCAACGAATAATCTCAACACAAACTTACAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTAAATCAACTGCAACGAATAATCTCAACACAAACTTACAAATT  200

seq1  AAACAGGCTTGAATTCAAATCCTGTGGCTGTCTTTGCATTGACATAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTTGAATTCAAATCCTGTGGCTGTCTTTGCATTGACATAAGCA  250

seq1  ATTGCAGGCATCCTCTCCTTGGCTGGGTTCTGGCACGCAGGGCACTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGCATCCTCTCCTTGGCTGGGTTCTGGCACGCAGGGCACTCTGT  300

seq1  GGCCATAATTTTGCTAAATAATTAAACTTCCAACAGTATGGTTCAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAATTTTGCTAAATAATTAAACTTCCAACAGTATGGTTCAAATAT  350

seq1  CAGCCATCACATATATTAACTGTGAATAATTCCATAAAGTACAACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCACATATATTAACTGTGAATAATTCCATAAAGTACAACTTTTA  400

seq1  CAGCCAGATCTGTAGTCCACAAATCAACAGCCAAGTAACAGATAGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGATCTGTAGTCCACAAATCAACAGCCAAGTAACAGATAGACATT  450

seq1  ATGATCAGTGACCAAGCCAATCTATCATGACTTTCAAAGACTACTGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAGTGACCAAGCCAATCTATCATGACTTTCAAAGACTACTGTGGT  500

seq1  TGGTCATCATATGTGTTGCTCAGTTCAGGCAGAGATAGTGAAGGGTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCATATGTGTTGCTCAGTTCAGGCAGAGATAGTGAAGGGTAATA  550

seq1  TTGTGTTGTCTTCTCATTTCCTGATAATAACTCTGAAAGACATCTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTCTTCTCATTTCCTGATAATAACTCTGAAAGACATCTTCCAA  600

seq1  ACTAGATAATTCAGAGAGTGAGTTAACCATGAAAAAAGTGAGACCAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAATTCAGAGAGTGAGTTAACCATGAAAAAAGTGAGACCAATAG  650

seq1  GGTGAAATTCTAACAGTTAATAATTGAAAATTATTGACAGAAGGGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATTCTAACAGTTAATAATTGAAAATTATTGACAGAAGGGTCAGC  700

seq1  TCTGGAGATGCTGATGTTTACATCATTCAAGAGCGAATCTAGATGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATGCTGATGTTTACATCATTCAAGAGCGAATCTAGATGAACTG  750

seq1  G  751
      |
seq2  G  751