BAC Information

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BAC

Clone NameB6Ng01-168M01
Chromosome9 (Build37)
Map Location 65,638,805 - 65,742,075
singlet/doubletdoublet
Overlap geneZfp609, Trip4, 2810417H13Rik
Upstream geneAI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, LOC100041180
Downstream geneCsnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M01.bB6Ng01-168M01.g
ACCDH959909DH959910
length1,1991,182
definitionDH959909|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M01, 5' end.DH959910|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,740,846 - 65,742,075)(65,638,805 - 65,640,011)
sequence
gaattcttaaggaattacagaagactgaaaacaaaaaccaagaaaaaata
tggaattactatgaatagtttctgtagagaggaatttctgtttaatttct
ctattttatttgtatatgtcttgtgaaagttcaacatatagtattattac
ttattttggaactggaaactaaacctagcactgcaggcatgctgagtagc
agacttcctcggagctacaccctcagttcccaactagtaattgtgtgcgg
tataaggagcttaatggaattcaaactagatgaactgacatagaaatttc
tttttgggaaaaaaaaaggcagaaaaagaagagacaaaaggagggaagag
agggaaggaggaggcagacacacagaagtgtggcagctcacacttctcag
cgtagtgctcgctttagcaagtcgaggcagaggattgcaaacagttcgag
ttaatcctgggctacatacagagactgtctcagaaaacaaatcaaaacaa
aaagctatgaaaattagaggaataataaatgaagaggaatcaagtctctt
tagagttaagtaaaagtaaataatttttgaaaaatatttgaaattttaaa
gtgacataaatgattagaaattaaagcacagttttcattttctcactagt
cctgaaagaaactttaaaattattatcccgtttgtcttatttttaggagg
atatttccttgttttccagcacatcgacacttactttctctttgcttttc
ctaagccactggttcctgcttcttcaggagcctggttttcctttttagac
tctttaggggacagcctgaagaattccccgatgccttttgccacttggga
gttgggcgcacacagactgggttccctcctgcatacttattttcagctgt
aaaatagaaacagaactaaataaaaaccaatgtcattggcattctccacc
ctaccctcagtcagagctctctgtgtagcctggctgtcctgaaactgctc
tgtagacaagctgggcctcgaactcacagagatcactgctctaccccctg
atgctgggatatgcgtgcgccaccacctgctttgcattctttttttttca
aggattattattatttagggtatgaatacacattgccttctcgaacacac
aggagagcatcaatcaattacaaatgggtttgaagccaccatgtgggtg
gaattcctttctccttgcctgtcagaggggtgtcagaggggtgagctcag
agcatcagacaggaatctacctcctccatgcatctcctattccatcctca
acctaacaacctatcaatcaagccaaaaagcaaggaagcagacagaggcc
agaagctccacggcctttccttgacattattacctttcccatctcctcag
gggtgttcaacagctcagggcagcaatggctcctaagagccatttcagtc
tctccagggaactctgccaagaaggtgtgttagagcaaaccctgatttca
tgaagggaaatacacatgctcggctgacagaaatccctcagtagcagtgc
cagacacttagtttgatagagaaagtcctggggtagggattttgaatatt
caacccctgattagctagtgctcaacatgggacaattcgaaccaatatca
cagactcctcttctatttggaaaagtggtgggtgggggctggagagatgg
ctcagcggttagagcattgttgctgagtacccaatttcagttcccagaac
ccacactgcagctaagaactatctgcaacttcagtttcagagactccaac
gcctcttctggcccctgaatacatgtacatagacacatatcaggcaaaac
acccatttacataaaataaaaataaataaacgttgcggaagaaaagaaaa
ggcagcgtggaatacagtgctttaatcaagatagcttccaaatttttagt
ttcccgtcttcatgctagcttccagcttgattacatcacacacgtttttt
gctttttgggttctgttgattgtccctacaaaaagtaacattccaaacta
gttatctcagaggcaagcccatatttcaggggtttcaaagactctgcttg
caaactaaattacaacactaatcaacactctgagagcagctatgtatgca
caccctggggttccagttcttaaaagctgatgcttcctgaaaactgctac
ctttccttcttatcttctctccctactctctgctctggcatcagatcagg
ctgtgcattcccaccagccaccattcccagaccttgccttcttcatttgc
tgtccctcttttcattccgagaatgctggttcttgcaggtgcttgtctct
ctagcactcaccgttactgatatttattaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65740846_65742075
seq2: B6Ng01-168M01.b_46_1244 (reverse)

seq1  CACCCACATGGTGGC-TCACAACCATCTGTAATGGGATTTGATGCCCTCT  49
      ||||||||||||||| ||| | |||| |||||| |   ||||||| ||| 
seq2  CACCCACATGGTGGCTTCAAACCCATTTGTAATTG--ATTGATGCTCTCC  48

seq1  TCTGGTGTGTCTGAAGAAAGCAATGGTGTACTCATTACACATAAAAATAA  99
      |   |||||| |  |||| ||||| ||||| ||| ||| |  || |||||
seq2  T---GTGTGT-TCGAGAAGGCAAT-GTGTATTCA-TACCCTAAATAATAA  92

seq1  ATAAATAAATCTTTAAAAAAAAAAAAAAGAATGGCAAAGCCAGGTGGTGG  149
             |||| ||     ||||||||||||| |||||| ||||||||||
seq2  ------TAATCCTT----GAAAAAAAAAGAAT-GCAAAG-CAGGTGGTGG  130

seq1  CGCACGCCAATAATCCCAGCAATCAGGGGGGTAGAGGCAGGTGGATCTCT  199
      |||||||  || |||||||| |||| ||||||||| ||||   |||||||
seq2  CGCACGC--AT-ATCCCAGC-ATCA-GGGGGTAGA-GCAG--TGATCTCT  172

seq1  GTGAGTTCGAGG-CCAGCTTGGTCTACAGAGCAAGTTTCAGGACAGCCAG  248
      |||||||||||| ||||||| ||||||||||| |||||||||||||||| 
seq2  GTGAGTTCGAGGCCCAGCTT-GTCTACAGAGC-AGTTTCAGGACAGCCA-  219

seq1  GGCTACACAGAGAAGCTCTGACTGAGGGTAGGGTGGAGAATGCCAATGAC  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAG-AGCTCTGACTGAGGGTAGGGTGGAGAATGCCAATGAC  268

seq1  ATTGGTTTTTATTTAGTTCTGTTTCTATTTTACAGCTGAAAATAAGTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTTTATTTAGTTCTGTTTCTATTTTACAGCTGAAAATAAGTATG  318

seq1  CAGGAGGGAACCCAGTCTGTGTGCGCCCAACTCCCAAGTGGCAAAAAGGC  398
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGAGGGAACCCAGTCTGTGTGCGCCCAACTCCCAAGTGGC-AAAAGGC  367

seq1  ATCGGGGAATTCTTCAGGCTGTCCCCTAAAGAGTCTAAAAAGGAAAACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGGAATTCTTCAGGCTGTCCCCTAAAGAGTCTAAAAAGGAAAACCA  417

seq1  GGCTCCTGAAGAAGCAGGAACCAGTGGCTTAGGAAAAGCAAAGAGAAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGAAGAAGCAGGAACCAGTGGCTTAGGAAAAGCAAAGAGAAAGT  467

seq1  AAGTGTCGATGTGCTGGAAAACAAGGAAATATCCTCCTAAAAATAAGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCGATGTGCTGGAAAACAAGGAAATATCCTCCTAAAAATAAGACA  517

seq1  AACGGGATAATAATTTTAAAGTTTCTTTCAGGACTAGTGAGAAAATGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGATAATAATTTTAAAGTTTCTTTCAGGACTAGTGAGAAAATGAAA  567

seq1  ACTGTGCTTTAATTTCTAATCATTTATGTCACTTTAAAATTTCAAATATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTTAATTTCTAATCATTTATGTCACTTTAAAATTTCAAATATT  617

seq1  TTTCAAAAATTATTTACTTTTACTTAACTCTAAAGAGACTTGATTCCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAATTATTTACTTTTACTTAACTCTAAAGAGACTTGATTCCTCT  667

seq1  TCATTTATTATTCCTCTAATTTTCATAGCTTTTTGTTTTGATTTGTTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTATTCCTCTAATTTTCATAGCTTTTTGTTTTGATTTGTTTTC  717

seq1  TGAGACAGTCTCTGTATGTAGCCCAGGATTAACTCGAACTGTTTGCAATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGTCTCTGTATGTAGCCCAGGATTAACTCGAACTGTTTGCAATC  767

seq1  CTCTGCCTCGACTTGCTAAAGCGAGCACTACGCTGAGAAGTGTGAGCTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCGACTTGCTAAAGCGAGCACTACGCTGAGAAGTGTGAGCTGC  817

seq1  CACACTTCTGTGTGTCTGCCTCCTCCTTCCCTCTCTTCCCTCCTTTTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCTGTGTGTCTGCCTCCTCCTTCCCTCTCTTCCCTCCTTTTGTC  867

seq1  TCTTCTTTTTCTGCCTTTTTTTTTCCCAAAAAGAAATTTCTATGTCAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTCTGCCTTTTTTTTTCCCAAAAAGAAATTTCTATGTCAGTT  917

seq1  CATCTAGTTTGAATTCCATTAAGCTCCTTATACCGCACACAATTACTAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTTTGAATTCCATTAAGCTCCTTATACCGCACACAATTACTAGT  967

seq1  TGGGAACTGAGGGTGTAGCTCCGAGGAAGTCTGCTACTCAGCATGCCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTGAGGGTGTAGCTCCGAGGAAGTCTGCTACTCAGCATGCCTGC  1017

seq1  AGTGCTAGGTTTAGTTTCCAGTTCCAAAATAAGTAATAATACTATATGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGGTTTAGTTTCCAGTTCCAAAATAAGTAATAATACTATATGTT  1067

seq1  GAACTTTCACAAGACATATACAAATAAAATAGAGAAATTAAACAGAAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCACAAGACATATACAAATAAAATAGAGAAATTAAACAGAAATT  1117

seq1  CCTCTCTACAGAAACTATTCATAGTAATTCCATATTTTTTCTTGGTTTTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTACAGAAACTATTCATAGTAATTCCATATTTTTTCTTGGTTTTT  1167

seq1  GTTTTCAGTCTTCTGTAATTCCTTAAGAATTC  1230
      ||||||||||||||||||||||||||||||||
seq2  GTTTTCAGTCTTCTGTAATTCCTTAAGAATTC  1199

seq1: chr9_65638805_65640011
seq2: B6Ng01-168M01.g_69_1250

seq1  GAATTCCTTTCTCCTTGCCTGTCAGAGGGGTGTCAGAGGGGTGAGCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTCCTTGCCTGTCAGAGGGGTGTCAGAGGGGTGAGCTCAG  50

seq1  AGCATCAGACAGGAATCTACCTCCTCCATGCATCTCCTATTCCATCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGACAGGAATCTACCTCCTCCATGCATCTCCTATTCCATCCTCA  100

seq1  ACCTAACAACCTATCAATCAAGCCAAAAAGCAAGGAAGCAGACAGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACAACCTATCAATCAAGCCAAAAAGCAAGGAAGCAGACAGAGGCC  150

seq1  AGAAGCTCCACGGCCTTTCCTTGACATTATTACCTTTCCCATCTCCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCCACGGCCTTTCCTTGACATTATTACCTTTCCCATCTCCTCAG  200

seq1  GGGTGTTCAACAGCTCAGGGCAGCAATGGCTCCTAAGAGCCATTTCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCAACAGCTCAGGGCAGCAATGGCTCCTAAGAGCCATTTCAGTC  250

seq1  TCTCCAGGGAACTCTGCCAAGAAGGTGTGTTAGAGCAAACCCTGATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGAACTCTGCCAAGAAGGTGTGTTAGAGCAAACCCTGATTTCA  300

seq1  TGAAGGGAAATACACATGCTCGGCTGACAGAAATCCCTCAGTAGCAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAATACACATGCTCGGCTGACAGAAATCCCTCAGTAGCAGTGC  350

seq1  CAGACACTTAGTTTGATAGAGAAAGTCCTGGGGTAGGGATTTTGAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTTAGTTTGATAGAGAAAGTCCTGGGGTAGGGATTTTGAATATT  400

seq1  CAACCCCTGATTAGCTAGTGCTCAACATGGGACAATTCGAACCAATATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTGATTAGCTAGTGCTCAACATGGGACAATTCGAACCAATATCA  450

seq1  CAGACTCCTCTTCTATTTGGAAAAGTGGTGGGTGGGGGCTGGAGAGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCTCTTCTATTTGGAAAAGTGGTGGGTGGGGGCTGGAGAGATGG  500

seq1  CTCAGCGGTTAGAGCATTGTTGCTGAGTACCCAATTTCAGTTCCCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGGTTAGAGCATTGTTGCTGAGTACCCAATTTCAGTTCCCAGAAC  550

seq1  CCACACTGCAGCTAAGAACTATCTGCAACTTCAGTTTCAGAGACTCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGCAGCTAAGAACTATCTGCAACTTCAGTTTCAGAGACTCCAAC  600

seq1  GCCTCTTCTGGCCCCTGAATACATGTACATAGACACATATCAGGCAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCTGGCCCCTGAATACATGTACATAGACACATATCAGGCAAAAC  650

seq1  ACCCATTTACATAAAATAAAAATAAATAAACGTTGCGGAAGAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTACATAAAATAAAAATAAATAAACGTTGCGGAAGAAAAGAAAA  700

seq1  GGCAGCGTGGAATACAGTGCTTTAATCAAGATAGCTTCCAAATTTTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGTGGAATACAGTGCTTTAATCAAGATAGCTTCCAAATTTTTAGT  750

seq1  TTCCCGTCTTCATGCTAGCTTCCAGCTTGATTACATCACACACGTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTCTTCATGCTAGCTTCCAGCTTGATTACATCACACACGTTTTTT  800

seq1  GCTTTTTGGGTTCTGTTGATTGTCCCTACAAAAAGTAACATTCCAAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGGGTTCTGTTGATTGTCCCTACAAAAAGTAACATTCCAAACTA  850

seq1  GTTATCTCAGAGGCAAGCCCATATTTCAGGGGTTTCAAAGACTCTGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCAGAGGCAAGCCCATATTTCAGGGGTTTCAAAGACTCTGCTTG  900

seq1  CAAACTAAATTACAACACTAATCAACACTCTGAGAGCAGCTATTGTATGC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAACTAAATTACAACACTAATCAACACTCTGAGAGCAGCTA-TGTATGC  949

seq1  AACACCCTGGGGTTCCAAGTTCTTAAAAGCTGATGCTTCCTGAAAAACTG  1000
       ||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  -ACACCCTGGGGTTCC-AGTTCTTAAAAGCTGATGCTTCCTG-AAAACTG  996

seq1  CTAACCTTTTCCTTCTTATCTTCCTCTCCCTACCTCTCTGCTCTGCCATC  1050
      |||  | ||||||||||||||| ||||||||| |||||||||||| ||||
seq2  CTA--CCTTTCCTTCTTATCTT-CTCTCCCTA-CTCTCTGCTCTGGCATC  1042

seq1  AGATCAAGCCTGTGCATTCCCACCAGCCACCATTCCCAGACCCTTGCCTT  1100
      ||||| || ||||||||||||||||||||||||||||||| |||||||||
seq2  AGATC-AGGCTGTGCATTCCCACCAGCCACCATTCCCAGA-CCTTGCCTT  1090

seq1  TCTTTCACTTTGCCTGTCCCTCTTTCCATTCCAGAAATGCTTGTTCCTTG  1150
         |||| |||| |||||||||||| ||||||   |||||| ||| ||||
seq2  --CTTCA-TTTG-CTGTCCCTCTTTTCATTCCGAGAATGCTGGTT-CTTG  1135

seq1  CAAAGTGTGCTTGTCTC-CTAGCAACTTCCAAACATTTACTTAAATATTT  1199
      ||    ||||||||||| ||||||     |  ||  ||||| | |   ||
seq2  CA---GGTGCTTGTCTCTCTAGCA-----CTCACCGTTACTGATA---TT  1174

seq1  TATTAACC  1207
      ||||||||
seq2  TATTAACC  1182