BAC Information

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BAC

Clone NameB6Ng01-169D02
Chromosome9 (Build37)
Map Location 95,329,476 - 95,451,766
singlet/doubletdoublet
Overlap gene2610101N10Rik, LOC100040097
Upstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
Downstream genePaqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169D02.bB6Ng01-169D02.g
ACCDH960235DH960236
length1,1341,133
definitionDH960235|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D02, 5' end.DH960236|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,329,476 - 95,330,614)(95,450,609 - 95,451,766)
sequence
gaattctggttcgcctcactggctttccttgctttgttttgcatttaaag
gtcacggacactagctattagacagcgacaaaaacacttacttgttccca
ggctaaactgagaatcatatctcacacttacaaaaactgtctcatggacc
tcgactagatagatattaggatcccattctttgagaatcaacactctaca
agtttaaagtttctcaaagataagggttaggggttaggggagatgcaagg
attgaaaggtagacatattgtcacagaagaaagcaatcacaacattggat
cgagatgtgcacactcctaagactgcttcaggactcggcgctttgcgtat
ggagtgtgttggccaaatatttgttagggcagtgaaggacggaatgcaca
aacatccaggctgtaaaatttattttgtatcttctttcagtttatcttgc
tccattatccattagtaattaacgacttcagtgtttcgttaacacaacac
aatgcctaccctcaggttccttcttctgtgccgagtgttccgattactaa
agacgcagacagcggctgacccccatgtggtatgggttgcagtcagcttg
gacattcatggaggcccaagcggttttgatgtttgtagatctcattttct
attttgagagttattagtctttttgcttatactcgatcataagccctgtg
gcctgaatctaccacttggatttcaagtttgggttttagtttaagccctg
atgttagtttatgtctgatgttagctccacattgatagtttctttgtacc
tgagggttggtgtttacagagaggaaacgtcccatgatttcactccatct
ggagcctggactccagtttactttacaagtctttccactggatttttttt
aaatgtttgactgcttgcttgctaacttgcttatttgtttttgaggcaga
gtctcactcttatagcccaacttgacctggagtttgctttgtgggaccag
cctagcttgaactcacagcaatccctctggcctcagttctcaagtactgg
catgatagacagagttcatgacacctttagaagaattttaacaaggcact
ctggcagggatccatcagaacctctggaatcaca
gaattctgtcctgtgtgattggtagtgcttggtctaagagagagagaaaa
aaatagttttgaaagatttggatgagtaatttccagccttcctcctcctc
ctcatcttcctgactgtctcagctttcctatggttcctctagaggagtct
cactaagaaaggctgtctgtggctgtgcttgggctgtccctgacctgtgg
cccattttaagaggagagggcttatctgcagagtcagccatgctctgcca
ccaggccctgagccaggcatgcgctatcttccctggagaggggttatctt
tttcttagttcactgggaggctgtgagctgtccttggtggggggcgtggg
ggtgggtcgtacttggttcactctctaccgcctcctgcctctcctgccta
gcacacttttctttcatgtcactgcctagtatcacccaaatggatgatta
acgctctcccatgggccagtgaggtggctcaggaggtcaaggtgtttgtc
attaagcttaacaacctgagtttgattaccagtgctcaagtgtacacacg
cgcacacacacacacacacacacacacacacacacacacacacacactca
tgcacacacacaaataaattaataataaattaaatacaattacgtagggc
tcctctaaatccttcctaaactcagagactaggctcagcttggagtattt
gtattgacagtgaactggaagtctccacaacccagacctgtttagccaaa
atagaaaactcaaagctgttggctgtgaacctcaaagacttgaacagtgg
tttctgctcttcaccactaatcactttaaaggggaccttaaagaaagaaa
gaaaagaaagaaagggagaaagagggagaagaaagaaagaaaaagatcac
gctacatcttcagctctccagaagatagggggtgttgatgtgtgacatgg
gtgatttatctgggaagaaacgaccacggaacactaggttatcttggtag
gatgagtgcgcaggcctttattgcatttaaggtcataggaccaaggtagt
ttataggattcctggattcccggctaattatagctactttggaccctcgc
ccgctcagcgagctccgcttgttctccctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95329476_95330614
seq2: B6Ng01-169D02.b_49_1182

seq1  GAATTCTGGTTCGCCTCACTGGCTTTCCTTGCTTTGTTTTGCATTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTCGCCTCACTGGCTTTCCTTGCTTTGTTTTGCATTTAAAG  50

seq1  GTCACGGACACTAGCTATTAGACAGCGACAAAAACACTTACTTGTTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGACACTAGCTATTAGACAGCGACAAAAACACTTACTTGTTCCCA  100

seq1  GGCTAAACTGAGAATCATATCTCACACTTACAAAAACTGTCTCATGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACTGAGAATCATATCTCACACTTACAAAAACTGTCTCATGGACC  150

seq1  TCGACTAGATAGATATTAGGATCCCATTCTTTGAGAATCAACACTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTAGATAGATATTAGGATCCCATTCTTTGAGAATCAACACTCTACA  200

seq1  AGTTTAAAGTTTCTCAAAGATAAGGGTTAGGGGTTAGGGGAGATGCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGTTTCTCAAAGATAAGGGTTAGGGGTTAGGGGAGATGCAAGG  250

seq1  ATTGAAAGGTAGACATATTGTCACAGAAGAAAGCAATCACAACATTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGTAGACATATTGTCACAGAAGAAAGCAATCACAACATTGGAT  300

seq1  CGAGATGTGCACACTCCTAAGACTGCTTCAGGACTCGGCGCTTTGCGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGTGCACACTCCTAAGACTGCTTCAGGACTCGGCGCTTTGCGTAT  350

seq1  GGAGTGTGTTGGCCAAATATTTGTTAGGGCAGTGAAGGACGGAATGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTTGGCCAAATATTTGTTAGGGCAGTGAAGGACGGAATGCACA  400

seq1  AACATCCAGGCTGTAAAATTTATTTTGTATCTTCTTTCAGTTTATCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAGGCTGTAAAATTTATTTTGTATCTTCTTTCAGTTTATCTTGC  450

seq1  TCCATTATCCATTAGTAATTAACGACTTCAGTGTTTCGTTAACACAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATCCATTAGTAATTAACGACTTCAGTGTTTCGTTAACACAACAC  500

seq1  AATGCCTACCCTCAGGTTCCTTCTTCTGTGCCGAGTGTTCCGATTACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTACCCTCAGGTTCCTTCTTCTGTGCCGAGTGTTCCGATTACTAA  550

seq1  AGACGCAGACAGCGGCTGACCCCCATGTGGTATGGGTTGCAGTCAGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAGACAGCGGCTGACCCCCATGTGGTATGGGTTGCAGTCAGCTTG  600

seq1  GACATTCATGGAGGCCCAAGCGGTTTTGATGTTTGTAGATCTCATTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCATGGAGGCCCAAGCGGTTTTGATGTTTGTAGATCTCATTTTCT  650

seq1  ATTTTGAGAGTTATTAGTCTTTTTGCTTATACTCGATCATAAGCCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGAGTTATTAGTCTTTTTGCTTATACTCGATCATAAGCCCTGTG  700

seq1  GCCTGAATCTACCACTTGGATTTCAAGTTTGGGTTTTAGTTTAAGCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATCTACCACTTGGATTTCAAGTTTGGGTTTTAGTTTAAGCCCTG  750

seq1  ATGTTAGTTTATGTCTGATGTTAGCTCCACATTGATAGTTTCTTTGTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTTTATGTCTGATGTTAGCTCCACATTGATAGTTTCTTTGTACC  800

seq1  TGAGGGTTGGTGTTTACAGAGAGGAAACGTCCCATGATTTCACTCCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTGGTGTTTACAGAGAGGAAACGTCCCATGATTTCACTCCATCT  850

seq1  GGAGCCTGGACTCCAGTTTACTTTACAAGTCTTTCCACTGGATTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGACTCCAGTTTACTTTACAAGTCTTTCCACTGGATTTTTTTT  900

seq1  AAATGTTTGACTGCTTGCTTGCTAACTTGCTTATTTGTTTTTGAGGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGACTGCTTGCTTGCTAACTTGCTTATTTGTTTTTGAGGCAGA  950

seq1  GTCTCACTCTTATAGCCCAACTTGACCTGGAGTTTGCTTTGT-GGACCAG  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCTCACTCTTATAGCCCAACTTGACCTGGAGTTTGCTTTGTGGGACCAG  1000

seq1  CCTAGCCTTGAACTCACAGCCATCCCTCT-GCCTCAGTTCTCAAGTACTG  1048
      ||||| |||||||||||||| |||||||| ||||||||||||||||||||
seq2  CCTAG-CTTGAACTCACAGCAATCCCTCTGGCCTCAGTTCTCAAGTACTG  1049

seq1  GCATGATAGACAAGAG-TCATGACACCCTTTAGAAGAATTTTAACACAGC  1097
      ||||||||||| |||| |||||||| |||||||||||||||||||| || 
seq2  GCATGATAGAC-AGAGTTCATGACA-CCTTTAGAAGAATTTTAACA-AGG  1096

seq1  CACTCTGGCAAGGGATCACATCCAAAGACCCTCTGG-ATCACA  1139
      ||||||||| ||||||| ||||   ||| ||||||| ||||||
seq2  CACTCTGGC-AGGGATC-CATC---AGAACCTCTGGAATCACA  1134

seq1: chr9_95450609_95451766
seq2: B6Ng01-169D02.g_67_1199 (reverse)

seq1  GGAGAGGTGAGAACACAGCGAGGCTCTGCTGAGC-GGCAGGGGTGCAAAA  49
      ||||||| ||||||| ||||  |||| ||||||| |||  |||| |||| 
seq2  GGAGAGG-GAGAACA-AGCGGAGCTC-GCTGAGCGGGCGAGGGTCCAAA-  46

seq1  TGATGCTAATAATAGACGGGATTTCAAGAATTCCCTTTAATACAAACTAC  99
       |  ||||  | ||| ||||| | || |||| |       || |||||||
seq2  -GTAGCTATAATTAGCCGGGAATCCAGGAATCC-------TATAAACTAC  88

seq1  TTTGTTCTGATTGACCTTTAAAATTCAAATGAAAGCCCTGCG-ACTCATC  148
       ||| ||  | |||||||  |||| |||   |||| |||||| |||||||
seq2  CTTGGTCCTA-TGACCTT--AAATGCAA--TAAAGGCCTGCGCACTCATC  133

seq1  CTACCAAGATAACCTAGTGTTCCGT-GTCGTTTCTTTCCAGATAAATCAC  197
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  CTACCAAGATAACCTAGTGTTCCGTGGTCGTTTCTTCCCAGATAAATCAC  183

seq1  CAATGTCACACATCACCACCCCCTATTCTTCTGGAAGAGCTGGAAGATGT  247
      | ||||||||||||| ||||||||| |||||||| |||||| ||||||||
seq2  CCATGTCACACATCAACACCCCCTA-TCTTCTGG-AGAGCT-GAAGATGT  230

seq1  AGCGTGAATCTTTTTTCTTTCTTTCTTTCTTCCTTCTTTCTTCCTTTCTT  297
      |||||| ||| ||||||||||||||||   ||| ||||||| ||||||||
seq2  AGCGTG-ATC-TTTTTCTTTCTTTCTT--CTCCCTCTTTCTCCCTTTCTT  276

seq1  TCTTTTTCTTTCTTTCTTTTAAGGTCCCCTTTTAAGTGATTAGTGGTGAA  347
      || ||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TC-TTTTCTTTCTTTC-TTTAAGGTCCCCTTTAAAGTGATTAGTGGTGAA  324

seq1  GAGCAGAAACCACTGTTCAAGTCTTTGAGGTTCACAGCCAACAGCTTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGCAGAAACCACTGTTCAAGTCTTTGAGGTTCACAGCCAACAGC-TTTG  373

seq1  AGTTTTCTATTTTTGGCTAAACAGGTCTGGGTTGTGGAGACTTCCAGTTC  447
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTA-TTTTGGCTAAACAGGTCTGGGTTGTGGAGACTTCCAGTTC  422

seq1  ACTGTCAATACAAATACTCCAAGCTGAGCCTAGTCTCTGAGTTTAGGAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAATACAAATACTCCAAGCTGAGCCTAGTCTCTGAGTTTAGGAAG  472

seq1  GATTTAGAGGAGCCCTACGTAATTGTATTTAATTTATTATTAATTTATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGAGGAGCCCTACGTAATTGTATTTAATTTATTATTAATTTATTT  522

seq1  GTGTGTGTGCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  572

seq1  GTGTGTGTGCGCGTGTGTACACTTGAGCACTGGTAATCAAACTCAGGTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCGCGTGTGTACACTTGAGCACTGGTAATCAAACTCAGGTTG  622

seq1  TTAAGCTTAATGACAAACACCTTGACCTCCTGAGCCACCTCACTGGCCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTAATGACAAACACCTTGACCTCCTGAGCCACCTCACTGGCCCA  672

seq1  TGGGAGAGCGTTAATCATCCATTTGGGTGATACTAGGCAGTGACATGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGCGTTAATCATCCATTTGGGTGATACTAGGCAGTGACATGAAA  722

seq1  GAAAAGTGTGCTAGGCAGGAGAGGCAGGAGGCGGTAGAGAGTGAACCAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGTGCTAGGCAGGAGAGGCAGGAGGCGGTAGAGAGTGAACCAAG  772

seq1  TACGACCCACCCCCACGCCCCCCACCAAGGACAGCTCACAGCCTCCCAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACCCACCCCCACGCCCCCCACCAAGGACAGCTCACAGCCTCCCAGT  822

seq1  GAACTAAGAAAAAGATAACCCCTCTCCAGGGAAGATAGCGCATGCCTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGAAAAAGATAACCCCTCTCCAGGGAAGATAGCGCATGCCTGGC  872

seq1  TCAGGGCCTGGTGGCAGAGCATGGCTGACTCTGCAGATAAGCCCTCTCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCTGGTGGCAGAGCATGGCTGACTCTGCAGATAAGCCCTCTCCT  922

seq1  CTTAAAATGGGCCACAGGTCAGGGACAGCCCAAGCACAGCCACAGACAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGGGCCACAGGTCAGGGACAGCCCAAGCACAGCCACAGACAGC  972

seq1  CTTTCTTAGTGAGACTCCTCTAGAGGAACCATAGGAAAGCTGAGACAGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAGTGAGACTCCTCTAGAGGAACCATAGGAAAGCTGAGACAGTC  1022

seq1  AGGAAGATGAGGAGGAGGAGGAAGGCTGGAAATTACTCATCCAAATCTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGAGGAGGAGGAGGAAGGCTGGAAATTACTCATCCAAATCTTT  1072

seq1  CAAAACTATTTTTTTCTCTCTCTCTTAGACCAAGCACTACCAATCACACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTATTTTTTTCTCTCTCTCTTAGACCAAGCACTACCAATCACACA  1122

seq1  GGACAGAATTC  1158
      |||||||||||
seq2  GGACAGAATTC  1133