BAC Information

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BAC

Clone NameB6Ng01-169K01
Chromosome9 (Build37)
Map Location 94,470,295 - 94,637,716
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169K01.bB6Ng01-169K01.g
ACCDH960554DH960555
length4061,124
definitionDH960554|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K01, 5' end.DH960555|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,637,305 - 94,637,716)(94,470,295 - 94,471,421)
sequence
tataatttcggtatactgatttattcctttgcaaaatgattttagcagct
gtgacgggtctgtgcataatggctgcaagtcacggggaagcaggaggcat
agcactgagagcagcttgaggtgtgcgtacctgagctgcagaggactatg
cttagggtttacagaacgcacacccctcccctttccagcatctcccagtt
ctacagggagcacattaaagaactgagacttggcttcctcctgtcattga
tgccaaggtatctttgggtagtgctgagcagccagagcttggaagacaag
gagaaccacttcctgtcaatttcccacgtgttatcccattccctggcata
caggcagaagagagagcattggcctgtgaaaggtttggggtgtggggagg
ggggtg
gaattcctaaattaggatacattttgaaaaaaaaatttgttcatcagcaa
agtagatcaatgaacacttccaactttgaatttactgtgtaaatactgtt
aactgcattaaactttggccaacaggctcagcagccgttggtgtctgtgc
aaatggagccagtggagtgtgaaaagaaaatatgagaatcttttaagcct
gttaacttcatacacttctgttcatttgaaatgactgtctttgtaaactc
ctatagcatataaggtgatagtataggaataccatgtaaggattttataa
ataaacctatttcctgggtgttctggtgcatattttcattttctgtagca
ccgcataatttgcaatgtttatgagctgtgatgatgattttgaagttccc
ctatgctcatttacatcagagttgcactgctctgatttgcattcctacca
gcagtgtgcaaggacccctttcacctgacacttgttttcttttgtttctg
acactagcctttcagtaccatgagggttttcatttgaattccctggtggc
tggtaggttagacacattttcagacacatgcctattagctacttgaacac
ctttaaaaatgtctttttaggacctttgtccatgtttaatcttcttattg
ggtcctttttgggtttgccttgctattgaactgccggagttccttgtgca
tttaggatacagatagaacacccctgccccttctctctccctttccaccc
tctgtcctttttcactctgttgattgctttgggcagtagaagatgatttc
cagtttgctacaagcccactcatctaatttttttctacatgtgtgtgcct
ttgtttgcatgtgtgtaggtgtgccatctctccacactttatttactgag
acacattctcttgctggacctggagctcacagcttgctccagggatctgg
cctctgccttcagtatgctaggattacacagccccaaaccctttctcggg
ctgtatgtggggtgctggggataagatacctgttcttttgttttattcag
ggtggcatctccctcagcaaccaattgtctatattttgttgtgagtttgt
ttatggtgctagccgaaaagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94637305_94637716
seq2: B6Ng01-169K01.b_45_456 (reverse)

seq1  CACCCCCCTCCCCACACCCCAAACCTTTCACAGGCCAATGCTCTCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCTCCCCACACCCCAAACCTTTCACAGGCCAATGCTCTCTCTTC  50

seq1  TGCCTGTATGCCAGGGAATGGGATAACACGTGGGAAATTGACAGGAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTATGCCAGGGAATGGGATAACACGTGGGAAATTGACAGGAAGTG  100

seq1  GTTCTCCTTGTCTTCCAAGCTCTGGCTGCTCAGCACTACCCAAAGATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTTGTCTTCCAAGCTCTGGCTGCTCAGCACTACCCAAAGATACC  150

seq1  TTGGCATCAATGACAGGAGGAAGCCAAGTCTCAGTTCTTTAATGTGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCAATGACAGGAGGAAGCCAAGTCTCAGTTCTTTAATGTGCTCC  200

seq1  CTGTAGAACTGGGAGATGCTGGAAAGGGGAGGGGTGTGCGTTCTGTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAACTGGGAGATGCTGGAAAGGGGAGGGGTGTGCGTTCTGTAAAC  250

seq1  CCTAAGCATAGTCCTCTGCAGCTCAGGTACGCACACCTCAAGCTGCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCATAGTCCTCTGCAGCTCAGGTACGCACACCTCAAGCTGCTCTC  300

seq1  AGTGCTATGCCTCCTGCTTCCCCGTGACTTGCAGCCATTATGCACAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATGCCTCCTGCTTCCCCGTGACTTGCAGCCATTATGCACAGACC  350

seq1  CGTCACAGCTGCTAAAATCATTTTGCAAAGGAATAAATCAGTATACCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACAGCTGCTAAAATCATTTTGCAAAGGAATAAATCAGTATACCGAA  400

seq1  ATTATAGAATTC  412
      ||||||||||||
seq2  ATTATAGAATTC  412

seq1: chr9_94470295_94471421
seq2: B6Ng01-169K01.g_64_1187

seq1  GAATTCCTAAATTAGGATACATTTTGAAAAAAAAATTTGTTCATCAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATTAGGATACATTTTGAAAAAAAAATTTGTTCATCAGCAA  50

seq1  AGTAGATCAATGAACACTTCCAACTTTGAATTTACTGTGTAAATACTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCAATGAACACTTCCAACTTTGAATTTACTGTGTAAATACTGTT  100

seq1  AACTGCATTAAACTTTGGCCAACAGGCTCAGCAGCCGTTGGTGTCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATTAAACTTTGGCCAACAGGCTCAGCAGCCGTTGGTGTCTGTGC  150

seq1  AAATGGAGCCAGTGGAGTGTGAAAAGAAAATATGAGAATCTTTTAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGCCAGTGGAGTGTGAAAAGAAAATATGAGAATCTTTTAAGCCT  200

seq1  GTTAACTTCATACACTTCTGTTCATTTGAAATGACTGTCTTTGTAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTCATACACTTCTGTTCATTTGAAATGACTGTCTTTGTAAACTC  250

seq1  CTATAGCATATAAGGTGATAGTATAGGAATACCATGTAAGGATTTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATATAAGGTGATAGTATAGGAATACCATGTAAGGATTTTATAA  300

seq1  ATAAACCTATTTCCTGGGTGTTCTGGTGCATATTTTCATTTTCTGTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTATTTCCTGGGTGTTCTGGTGCATATTTTCATTTTCTGTAGCA  350

seq1  CCGCATAATTTGCAATGTTTATGAGCTGTGATGATGATTTTGAAGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATAATTTGCAATGTTTATGAGCTGTGATGATGATTTTGAAGTTCCC  400

seq1  CTATGCTCATTTACATCAGAGTTGCACTGCTCTGATTTGCATTCCTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCATTTACATCAGAGTTGCACTGCTCTGATTTGCATTCCTACCA  450

seq1  GCAGTGTGCAAGGACCCCTTTCACCTGACACTTGTTTTCTTTTGTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGCAAGGACCCCTTTCACCTGACACTTGTTTTCTTTTGTTTCTG  500

seq1  ACACTAGCCTTTCAGTACCATGAGGGTTTTCATTTGAATTCCCTGGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCCTTTCAGTACCATGAGGGTTTTCATTTGAATTCCCTGGTGGC  550

seq1  TGGTAGGTTAGACACATTTTCAGACACATGCCTATTAGCTACTTGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTTAGACACATTTTCAGACACATGCCTATTAGCTACTTGAACAC  600

seq1  CTTTAAAAATGTCTTTTTAGGACCTTTGTCCATGTTTAATCTTCTTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAATGTCTTTTTAGGACCTTTGTCCATGTTTAATCTTCTTATTG  650

seq1  GGTCCTTTTTGGGTTTGCCTTGCTATTGAACTGCCGGAGTTCCTTGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTTTGGGTTTGCCTTGCTATTGAACTGCCGGAGTTCCTTGTGCA  700

seq1  TTTAGGATACAGATAGAACACCCCTGCCCCTTCTCTCTCCCTTTCCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATACAGATAGAACACCCCTGCCCCTTCTCTCTCCCTTTCCACCC  750

seq1  TCTGTCCTTTTTCACTCTGTTGATTGCTTTGGGCAGTAGAAGATGATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTTTTCACTCTGTTGATTGCTTTGGGCAGTAGAAGATGATTTC  800

seq1  CAGTTTGCTACAAGCCCACTCATCTAATTTTTTTCTACATGTGTGTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCTACAAGCCCACTCATCTAATTTTTTTCTACATGTGTGTGCCT  850

seq1  TTGTTTGCATGTGTGTAGGTGTGCCATCTCTCCACACTTTATTTACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCATGTGTGTAGGTGTGCCATCTCTCCACACTTTATTTACTGAG  900

seq1  ACACATTCTCTTGCTGGACCTGGAGCTCACAGCTTGCTCCAGGGATCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCTCTTGCTGGACCTGGAGCTCACAGCTTGCTCCAGGGATCTGG  950

seq1  CCTCTGCCTTCAGTATGCTAGGATTACACAGCCCCAAACCC-TTCTCGGG  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTCTGCCTTCAGTATGCTAGGATTACACAGCCCCAAACCCTTTCTCGGG  1000

seq1  CTTGTATGT-GGGTGCTGGGGATTAGAATACTTGTTCTTATGTTTTATCC  1048
      | ||||||| ||||||||||||| || |||| ||||||| |||||||| |
seq2  C-TGTATGTGGGGTGCTGGGGATAAG-ATACCTGTTCTTTTGTTTTATTC  1048

seq1  AGTGTGGCATCT-CCTCAGCAACCCACTTGTCTAT-TTTTGTTTTGTAGT  1096
      || ||||||||| ||||||||| ||| |||||||| ||||||| || |||
seq2  AGGGTGGCATCTCCCTCAGCAA-CCAATTGTCTATATTTTGTTGTG-AGT  1096

seq1  TTGTTTATGGTGTCATAGCCGAAAAAGAAAG  1127
      ||||||||||||   |||||| |||||||||
seq2  TTGTTTATGGTG--CTAGCCG-AAAAGAAAG  1124