BAC Information

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BAC

Clone NameB6Ng01-169K18
Chromosome9 (Build37)10 (Build37)
Map Location 100,598,264 - 100,599,42312,081,250 - 12,081,621
singlet/doubletsingletsinglet
Overlap geneStag1
Upstream geneCldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486
Downstream geneLOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169K18.bB6Ng01-169K18.g
ACCDH960588DH960589
length1,142791
definitionDH960588|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K18, 5' end.DH960589|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,598,264 - 100,599,423)(12,081,250 - 12,081,621)
sequence
gaattccaggcatgctatcacttaaacaccagacatttatagaaggttct
agggatccaaattaatactagtgcttgaacactaagctatatcagttaat
cctgagggcaattaaaaaacaagttttctctttttttagaatctctgtaa
gagtagatacctgttttagttcaagaacataatggaatatttttatattt
tccatgtataatcattacatttgatggtaggttttcttaattaggctgtt
aaattgccaaacagttttgatttatgagtaggtagatctgttagtaaaat
aattaaaaggaagtattatttcctaacccccactcccacccccccagtct
ttggagatatttagtggtgattttggaatttttaaaaaccacagcaaatt
acttttattaaaatgtagggaaacattcttgcaattttggtgggcaagcc
tgttggtttttatttgcaaacatttttcatgtatgcaatatagggtgtta
cagtgtaaaagaagttagtatcttgaggttttatttttattgttagacag
gctgttgatttttttctcattgatctttaatttagaatagtctacttaat
ctggtgtggagaattttctaacctttcctcctccattttgatggatcact
gtctcagcccttgtttatgccctgtggaaaacccttcttgatctttgtca
ttgctttagctagtcaccatcactgagaagccctttatttatttcattga
gtactttccttacacacacatgcagtatgcttatggggcatgctgttttg
atgcatatattaccaaatcacggtaattaacagatccatcacctcaagca
tttacagttttattatggtgataacattgaaaattactcaagatgtttta
aaattttccgtacaggggctggtgagatggctcagtgggtagagcacccg
actgctcttccgaaggtctggagttcaaatcccagcaacacatggtggct
cacaccatcgtagagatctgactccctcttttgaggtctgaagacagcta
cagttacttaacaataatcaataataaatctaaaaattttttccgtacat
tactgtactagactacctgccaggggtatgcataccacattt
gaattcctgatctctccaaaacttttaacatgaaggggtgttgtattttg
tcaaatgctttttctgcatctaaggagtcatctttgagtttgtttatata
gtggattaagttaatggactttcttttttttttccattttttattaggta
tttagctcatttacatttctaatgctataccaaaagtcccccatacccac
ccacccccactcccctacccacccactcccgttaatggactttcctatat
agaatcaaccttgtatccctggcatgaagcctacttgatcgtggtgaatg
atggttttaatgcgttcttggattcagtttgcaaaaatattattgagtat
ttttgcatgatattcatgagcaagaatggtctgaagttcgcttctttggt
tgggtccctgtatggtttaggtatcagagtagttgtggcttcatagactg
agttaggtaatgttccttctgtttctatggaatagtttgaggaaaattgg
tatcaggtcttctttgtaggtctggtaaaattctacactaaattcatctg
gccctgggatttttttcgttgggaggtttttaatgacttctatttccttg
tgcaatatgggcctgtttagatagtttacctgctcttgctttaacttttg
gtatgtggtatctgcctttatacaaaatgataaacaggctgagaaaagaa
attagttaaacaactttccttcacaatagtcacaatacaagttgaaagac
ctgtatgacaataagacatggaaagagcaactctcaactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100598264_100599423
seq2: B6Ng01-169K18.b_45_1186

seq1  GAATTCCAGGCATGCTATCACTTAAACACCAGACATTTATAGAAGGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCATGCTATCACTTAAACACCAGACATTTATAGAAGGTTCT  50

seq1  AGGGATCCAAATTAATACTAGTGCTTGAACACTAAGCTATATCAGTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCAAATTAATACTAGTGCTTGAACACTAAGCTATATCAGTTAAT  100

seq1  CCTGAGGGCAATTAAAAAACAAGTTTTCTCTTTTTTTAGAATCTCTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGCAATTAAAAAACAAGTTTTCTCTTTTTTTAGAATCTCTGTAA  150

seq1  GAGTAGATACCTGTTTTAGTTCAAGAACATAATGGAATATTTTTATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATACCTGTTTTAGTTCAAGAACATAATGGAATATTTTTATATTT  200

seq1  TCCATGTATAATCATTACATTTGATGGTAGGTTTTCTTAATTAGGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTATAATCATTACATTTGATGGTAGGTTTTCTTAATTAGGCTGTT  250

seq1  AAATTGCCAAACAGTTTTGATTTATGAGTAGGTAGATCTGTTAGTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCAAACAGTTTTGATTTATGAGTAGGTAGATCTGTTAGTAAAAT  300

seq1  AATTAAAAGGAAGTATTATTTCCTAACCCCCACTCCCACCCCCCCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGGAAGTATTATTTCCTAACCCCCACTCCCACCCCCCCAGTCT  350

seq1  TTGGAGATATTTAGTGGTGATTTTGGAATTTTTAAAAACCACAGCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATATTTAGTGGTGATTTTGGAATTTTTAAAAACCACAGCAAATT  400

seq1  ACTTTTATTAAAATGTAGGGAAACATTCTTGCAATTTTGGTGGGCAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTAAAATGTAGGGAAACATTCTTGCAATTTTGGTGGGCAAGCC  450

seq1  TGTTGGTTTTTATTTGCAAACATTTTTCATGTATGCAATATAGGGTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTTTATTTGCAAACATTTTTCATGTATGCAATATAGGGTGTTA  500

seq1  CAGTGTAAAAGAAGTTAGTATCTTGAGGTTTTATTTTTATTGTTAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAAAGAAGTTAGTATCTTGAGGTTTTATTTTTATTGTTAGACAG  550

seq1  GCTGTTGATTTTTTTCTCATTGATCTTTAATTTAGAATAGTCTACTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGATTTTTTTCTCATTGATCTTTAATTTAGAATAGTCTACTTAAT  600

seq1  CTGGTGTGGAGAATTTTCTAACCTTTCCTCCTCCATTTTGATGGATCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGGAGAATTTTCTAACCTTTCCTCCTCCATTTTGATGGATCACT  650

seq1  GTCTCAGCCCTTGTTTATGCCCTGTGGAAAACCCTTCTTGATCTTTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCCCTTGTTTATGCCCTGTGGAAAACCCTTCTTGATCTTTGTCA  700

seq1  TTGCTTTAGCTAGTCACCATCACTGAGAAGCCCTTTATTTATTTCATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTAGCTAGTCACCATCACTGAGAAGCCCTTTATTTATTTCATTGA  750

seq1  GTACTTTCCTTACACACACATGCAGTATGCTTATGGGGCATGCTGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCCTTACACACACATGCAGTATGCTTATGGGGCATGCTGTTTTG  800

seq1  ATGCATATATTACCAAATCAGGGTAATTAACAGATCCATCACCTCAAGCA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCATATATTACCAAATCACGGTAATTAACAGATCCATCACCTCAAGCA  850

seq1  TTTACAGTTTTATTATGGTGATAACATTGAAAATTACTCAAGATGTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTTTTATTATGGTGATAACATTGAAAATTACTCAAGATGTTTTA  900

seq1  AAATTTTCCGTACAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCC  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATTTTCCGTACAGGGGCTGGTGAGATGGCTCAGTGGGT-AGAGCACCC  949

seq1  GACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAA-CACATGGTGG  998

seq1  CTCACAACCATCCGTAAGGAGATCTGACTCCCTCTTCTGGAGTGTCTGAA  1050
      ||||| ||||| ||||  |||||||||||||||||| | ||| |||||||
seq2  CTCAC-ACCAT-CGTA--GAGATCTGACTCCCTCTT-TTGAG-GTCTGAA  1042

seq1  GACAGCTACAGTGTACTTACATATAATCAATAAATAAATCTTAAAAAATT  1100
      |||||||||||| ||||||   ||||||||| |||||||||  |||||||
seq2  GACAGCTACAGT-TACTTAACAATAATCAAT-AATAAATCT--AAAAATT  1088

seq1  TTTTTTCCCGTACATTACTGTTAACTAGACTACCTTGCATGGTGTATGCA  1150
      ||||   ||||||||||||||  ||||||||||| |||  || |||||||
seq2  TTTT---CCGTACATTACTGT--ACTAGACTACC-TGCCAGGGGTATGCA  1132

seq1  TACCACATTT  1160
      ||||||||||
seq2  TACCACATTT  1142

seq1: chr10_12081250_12081621
seq2: B6Ng01-169K18.g_187_298 (reverse)

seq1  GGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTG  50

seq1  GTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATTAAAA  100
      |||||||||| ||||||||||||||||||||||||||||||||| |  ||
seq2  GTATAGCATTAGAAATGTAAATGAGCTAAATACCTAATAAAAAA-TGGAA  99

seq1  AAAAAAAAGAATGCTGCCTGAGAGTTCCCTAGACACCAGCTCTCCCTCCC  150
      ||||||||||| |                                     
seq2  AAAAAAAAGAAAG-------------------------------------  112

seq1  ACCTCTGATGTGCTCTGGGGCCTCAGGTCAAATGTCAGTATGTTCTGTGT  200
                                                        
seq2  --------------------------------------------------  112

seq1  AATATTAACCTACTTCCTAGCTCACAGGCAGTGAGTATTAGGCCTGAATC  250
                                                        
seq2  --------------------------------------------------  112

seq1  AGTGGTGTCAGGGTTCTGTGTTTGAAAACTATCTTTTATCACATGAAAGT  300
                                                        
seq2  --------------------------------------------------  112

seq1  CCCCGTGTTCTCCACCCCCCTCACACACACACCATCTTCATGGAAAGACT  350
                                                        
seq2  --------------------------------------------------  112

seq1  CTGAGGGAAAAAAAAAAGAAAG  372
                            
seq2  ----------------------  112