BAC Information

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BAC

Clone NameB6Ng01-169O01
Chromosome9 (Build37)
Map Location 39,827,955 - 39,955,675
singlet/doubletdoublet
Overlap geneOlfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985
Upstream geneEG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980
Downstream gene1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169O01.bB6Ng01-169O01.g
ACCDH960735DH960736
length3511,237
definitionDH960735|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O01, 5' end.DH960736|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,955,325 - 39,955,675)(39,827,955 - 39,829,217)
sequence
tctgtctgttggtttgacccttgaccttggtacctagggcattggaacca
ctaaggttctttgaaagagctacaatgtgatgaggtctgatttcacactc
ctccacacacactcataccccttcacacccctccatctcccgagagagaa
agagagagagaggggagagagagagagagagagagaaagagagagagaga
gagagagagagagagagagtgagagagagagagagagagagagatttcta
agacttaacgggcttaactgaagaggtcctagtcctgtactgcatcggaa
tacttgtgtagagggttagtgacacacagtggagattgagaaaaggagaa
t
gaattcctcactactgtaattaaatctctatggagcttccaataaacatt
tccagccagaagctgggaagaacccagatgtcgctcaacagagaaaagga
tacagaaattgtggtctcacatccccaagcaaaaaaagaagaaaaagaaa
aatcaaatcttgtatctcaaaatcaaataaaaatcagcaaatgacctttc
aaacaaaaaacagaaacaaaaacaaaaaacaaaaaacccatgtggagtaa
caatgtatctaataattaaactgtcttaaacatcagacaaaatatgtttt
agcaagtgtttgcaatctatagttttccaaccctggttcagaactataag
cttctctatgtctaaaactgaatagaatcactgattatctacatagactt
gaataggattaattcacccaattgtatgatatcaacttttgtagataccc
ctactttctataactccatttctttaagagtaacactgtatgtgatttga
gtcacctctccaaggcccttacaacccagctgttttcattctggacaacc
agacaccactcttcctcagacagtatgatataatctaatacaaggcccta
gtaatatactccaagctaaatttgaatggtgaatttaaagtaattaatat
atgacatccatttaatacctttagctttaaaattatttaccacccagacc
ttcatggaataaatgaacaattacgtgttatctgtggtttcaagttaaga
aaactaaaacccagggaagggaaagagggttctcaatgtattaccaagta
cttcctctcatcaggatcctgtgctacagggacatcactagcaattaagc
aaaattccaaagggtctgccgctaacaaagcccagtgaaatttatttata
cttaggaagctaattgcccccagtggaaatgcagaggtgatcccagcacc
ccttagctctactcacggagactacagaaagaaagaacttgcttaacaga
aagcaagccccagaggcaaaacaggatcctcagcagtagcatcaaaagct
ataggtggagcagaaagagcatagtttccaagcagcagcactacccataa
agctgcagaatggtccttaagaaacaccagcatgccgaagctgggagaac
agctgtggcagtgcctactgcgattcatctaagccgaagtgatccgcaga
atcaaggcggagagaaaggtatgaagggagagatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39955325_39955675
seq2: B6Ng01-169O01.b_49_399 (reverse)

seq1  ATTCTCCTTTTCTCAATCTCCACTGTGTGTCACTAACCCTCTACACAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTTTTCTCAATCTCCACTGTGTGTCACTAACCCTCTACACAAGT  50

seq1  ATTCCGATGCAGTACAGGACTAGGACCTCTTCAGTTAAGCCCGTTAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGATGCAGTACAGGACTAGGACCTCTTCAGTTAAGCCCGTTAAGTC  100

seq1  TTTGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  150
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAGAAATCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTCT  150

seq1  CTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCCCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCCCTCTCTCTCTC  200

seq1  TTTCTCTCTCGGGAGATGGAGGGGTGTGAAGGGGTATGAGTGTGTGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCGGGAGATGGAGGGGTGTGAAGGGGTATGAGTGTGTGTGGA  250

seq1  GGAGTGTGAAATCAGACCTCATCACATTGTAGCTCTTTCAAAGAACCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGAAATCAGACCTCATCACATTGTAGCTCTTTCAAAGAACCTTA  300

seq1  GTGGTTCCAATGCCCTAGGTACCAAGGTCAAGGGTCAAACCAACAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCAATGCCCTAGGTACCAAGGTCAAGGGTCAAACCAACAGACAG  350

seq1  A  351
      |
seq2  A  351

seq1: chr9_39827955_39829217
seq2: B6Ng01-169O01.g_66_1302

seq1  GAATTCCTCACTACTGTAATTAAATCTCTATGGAGCTTCCAATAAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTACTGTAATTAAATCTCTATGGAGCTTCCAATAAACATT  50

seq1  TCCAGCCAGAAGCTGGGAAGAACCCAGATGTCGCTCAACAGAGAAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCAGAAGCTGGGAAGAACCCAGATGTCGCTCAACAGAGAAAAGGA  100

seq1  TACAGAAATTGTGGTCTCACATCCCCAAGCAAAAAAAGAAGAAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAATTGTGGTCTCACATCCCCAAGCAAAAAAAGAAGAAAAAGAAA  150

seq1  AATCAAATCTTGTATCTCAAAATCAAATAAAAATCAGCAAATGACCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATCTTGTATCTCAAAATCAAATAAAAATCAGCAAATGACCTTTC  200

seq1  AAACAAAAAACAGAAACAAAAACAAAAAACAAAAAACCCATGTGGAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAGAAACAAAAACAAAAAACAAAAAACCCATGTGGAGTAA  250

seq1  CAATGTATCTAATAATTAAACTGTCTTAAACATCAGACAAAATATGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATCTAATAATTAAACTGTCTTAAACATCAGACAAAATATGTTTT  300

seq1  AGCAAGTGTTTGCAATCTATAGTTTTCCAACCCTGGTTCAGAACTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGTTTGCAATCTATAGTTTTCCAACCCTGGTTCAGAACTATAAG  350

seq1  CTTCTCTATGTCTAAAACTGAATAGAATCACTGATTATCTACATAGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATGTCTAAAACTGAATAGAATCACTGATTATCTACATAGACTT  400

seq1  GAATAGGATTAATTCACCCAATTGTATGATATCAACTTTTGTAGATACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGATTAATTCACCCAATTGTATGATATCAACTTTTGTAGATACCC  450

seq1  CTACTTTCTATAACTCCATTTCTTTAAGAGTAACACTGTATGTGATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTATAACTCCATTTCTTTAAGAGTAACACTGTATGTGATTTGA  500

seq1  GTCACCTCTCCAAGGCCCTTACAACCCAGCTGTTTTCATTCTGGACAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTCCAAGGCCCTTACAACCCAGCTGTTTTCATTCTGGACAACC  550

seq1  AGACACCACTCTTCCTCAGACAGTATGATATAATCTAATACAAGGCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCACTCTTCCTCAGACAGTATGATATAATCTAATACAAGGCCCTA  600

seq1  GTAATATACTCCAAGCTAAATTTGAATGGTGAATTTAAAGTAATTAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATACTCCAAGCTAAATTTGAATGGTGAATTTAAAGTAATTAATAT  650

seq1  ATGACATCCATTTAATACCTTTAGCTTTAAAATTATTTACCACCCAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCCATTTAATACCTTTAGCTTTAAAATTATTTACCACCCAGACC  700

seq1  TTCATGGAATAAATGAACAATTACGTGTTATCTGTGGTTTCAAGTTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGAATAAATGAACAATTACGTGTTATCTGTGGTTTCAAGTTAAGA  750

seq1  AAACTAAAACCCAGGGAAGGGAAAGAGGGTTCTCAATGTATTACCAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAACCCAGGGAAGGGAAAGAGGGTTCTCAATGTATTACCAAGTA  800

seq1  CTTCCTCTCATCAGGATCCTGTGCTACAGGGACATCACTAGCAATTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCATCAGGATCCTGTGCTACAGGGACATCACTAGCAATTAAGC  850

seq1  AAAATTCCAAAGGGTCTGCCGCTAACAAAGCCCAGTGAAATTTATTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCAAAGGGTCTGCCGCTAACAAAGCCCAGTGAAATTTATTTATA  900

seq1  CTTAGGAAGCTAATTGCCCCCAGTGGAAAATGCAGAGGTGATCCCAGCAC  950
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CTTAGGAAGCTAATTGCCCCCAGTGG-AAATGCAGAGGTGATCCCAGCA-  948

seq1  CCCCTTAGCTCCTACTCCACGGAGACTACAGAAAGAAAGAACTTGCTTAA  1000
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  CCCCTTAGCT-CTACT-CACGGAGACTACAGAAAGAAAGAACTTGCTTAA  996

seq1  CAGAAAGCAAGCCCCAGAGGCCAAAACCAAGGGATCCCTCAGCCAGTAGC  1050
      |||||||||||||||||||| ||||||    |||| |||||| |||||||
seq2  CAGAAAGCAAGCCCCAGAGG-CAAAAC---AGGAT-CCTCAG-CAGTAGC  1040

seq1  ATCACAAAGGCTATAAGGGTGAAGCAGAAAGAGCATAGTTTCACAAGCAA  1100
      ||  |||| ||||||  |||| |||||||||||||||||||| ||||| |
seq2  AT--CAAAAGCTATA--GGTGGAGCAGAAAGAGCATAGTTTC-CAAGC-A  1084

seq1  GCAGCACTACCCATAAAGCTGCAGAAATGGGTCTCTTTAAGGAACAACAG  1150
      |||||||||||||||||||||||| |||||   || ||||| |||| |||
seq2  GCAGCACTACCCATAAAGCTGCAG-AATGG---TCCTTAAGAAACACCAG  1130

seq1  CATGCCAGAAGCTGGGAGGAACAGC--TGGCAGTGGCCTCACTGCAGATT  1198
      |||||| |||||||||| |||||||  ||||||| |||| ||||| ||| 
seq2  CATGCC-GAAGCTGGGA-GAACAGCTGTGGCAGT-GCCT-ACTGC-GAT-  1174

seq1  CTCATCTAAGCAGAGTTGATCAGCAGAATCCAAGGCGGAAGGAGAGGTAT  1248
       |||||||||| ||  ||||| ||||||| |||||||||  || ||||||
seq2  -TCATCTAAGCCGAAGTGATCCGCAGAAT-CAAGGCGGAGAGAAAGGTAT  1222

seq1  AGTAATG-GAGATCCT  1263
       | |  | ||||||||
seq2  -GAAGGGAGAGATCCT  1237