BAC Information

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BAC

Clone NameB6Ng01-169O13
Chromosome9 (Build37)
Map Location 82,643,341 - 82,772,421
singlet/doubletdoublet
Overlap geneIrak1bp1, Phip
Upstream gene4930486G11Rik, LOC100039085
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169O13.bB6Ng01-169O13.g
ACCDH960759DH960760
length1,1421,064
definitionDH960759|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O13, 5' end.DH960760|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,771,264 - 82,772,421)(82,643,341 - 82,644,261)
sequence
gaattccagaattgagtttgtactctacagtactcaaagtttcagaagcg
aggcctccctttattttctataagttctctgtcgttttaaaacagtgctt
tgctatttacttcgtggttctagttgtttattgtttaagccttaatgttt
taattaatagaaatataaatattagccttttgcagaaataaatgaggcct
tgggtaatggttaggaaagaatttagaactgagaacccactcttagccaa
ctgagggagatttgcattctaattaaaaatctagaataattccacaataa
atgccattcttagctctagtgagatgggcatctcatttaagcatatacta
tttgtagacttagaatctgagttcatactattgtattgtagaaagtgaaa
ttttaaagtctctttatgtagcacatgaaaagattagaaaaattaaagac
taaaatcagcacattcgaaaataaagtaaaacttaacatttattgaagtt
attaagtgtttctaaccatgatggaatcagagtagaaattgttaacacaa
aggtctccaaggtagatcaagctgatctgccacacaagtgttggattatt
agcatacagtacttccaaatcaggcagggcaatacacttgtacatagtca
gtagatcaaataagtctatggtaatttaaaaaatgacctcaataacaatg
aattcaaaatgagtaccaacatttgtgatttggacttaagagtagggtaa
gaaaatgtaaaagtagtgtacgctgcatttgtcagaactcttgaaatcaa
tagtgtatattcacttctcagtatagaaaaggaagagtaagagcagaagg
aaacaggagtaaataacggagagctaacgtcagagctactgaagagtgca
gtgcgggctgtgctgcgacctcacttgtctcaccctggagtgagcagaag
ctctctcccacctgttagttccatttttattcagttcatttccagaacac
aagcctttggacatctaatatatataatatgttaatacaaaaatacctaa
ttggtaaattcttcgacatgaattactgtgacttcagctcatatagatgt
gagcttccttgaggggtttagagatccttggtcttagtttgg
gaattctcagcagaaggatcccaaatggctaagaagcacttaaagaaatg
ttcaacatacttagccatcagggaaatgcacatcaaaaccaacagtgaca
atccatcttacatctgtcagaatagctaagatcacaaacacaagtgaccg
cttatactgatgaggatgtggagcaaggggaacactcttccattgctggt
ggaaatgcaaatgtgtacatccactttgaagatcaataggatgatttctc
agaaaatttggaatggatctacctcaagacccagctattccactcctggt
tactccaccacactacaaaaacacttgttcaactatgttcatagcagctt
tattcataataaccaatgtggtggcttgaataggcaaggcctctataggc
tcctctgtgtgaatgcttagcccataaggggtggcatcattaggaggtgt
ggtcttgttggagtgggtgtggccttgttggaggaaatgtgtcattatgg
aggcaggctttgaggtcatacattctcaagtgatgcctagtgaggcacac
agtatcttcctgctgccttcagatcaagatatagaattctctgctcctcc
agcaccatgtttgcctgcatgatgccatgtttactaccatgatttatcat
tgtcatgaagtctttttacaataataaaaccaaactaagacatccagaaa
tgggaaaaaaaactaaatactccttaatagaagaatagacgaagaaaagg
tagtacatttacaaaatggagtattactcaaccagtaaaatcaatggcat
catgaaatttgccaccaaaagaatggaactaaaaaggatcatcctgagtg
aggtaactcagatccaaaaagatacacatggtatctactcacttataatg
ggatattagctataaagcaaaagtaaacagtgctacaatccacacaccca
gagaagctaagtaataagaggccctcgtggggagggaggaacatgttgga
tctccctgggatgggaagcagaataatcattggaggtgaaacaagtgggg
taagaagggattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82771264_82772421
seq2: B6Ng01-169O13.b_45_1186 (reverse)

seq1  CCAAACATAAGACCAAAGTATTTCTAAAACTCCTCAAGACAGCTCACATC  50
      |||||| ||||||| ||| || ||| |||| |||||||  ||||||||||
seq2  CCAAAC-TAAGACC-AAGGATCTCT-AAACCCCTCAAGGAAGCTCACATC  47

seq1  TATATAGAGCCTGAAGTCACAGTAATTTCATGTCGAAGAATTTAACAAAT  100
      ||||| ||| ||||||||||||||| ||||||||||||||||| || |||
seq2  TATAT-GAG-CTGAAGTCACAGTAA-TTCATGTCGAAGAATTT-ACCAAT  93

seq1  TAGGTATTTTGTAATAAACAATAATAATAAATATAAATAGATGTCAAAAG  150
      ||||||||||   || |||    ||| || |||| | |||||||| ||||
seq2  TAGGTATTTTTGTATTAAC----ATATTATATAT-ATTAGATGTCCAAAG  138

seq1  GCTTGTGTTCTGGAAATGAACTGGATAAAGATGGAACCTAACAGGTGGGA  200
      ||||||||||||||||||||||| ||||| |||||| |||||||||||||
seq2  GCTTGTGTTCTGGAAATGAACTGAATAAAAATGGAA-CTAACAGGTGGGA  187

seq1  GAAGAGCTTCTGCTCACTCCAGGGTGAGACAAGTGAGGTCGCAGCACAGC  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGAGCTTCTGCTCACTCCAGGGTGAGACAAGTGAGGTCGCAGCACAGC  236

seq1  CCGCACTGCACCTCTTCAGTAGCTCTGACGTTAGCTCTCCGTTATTTTAC  300
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CCGCACTGCA-CTCTTCAGTAGCTCTGACGTTAGCTCTCCGTTA-TTTAC  284

seq1  TCCTGTTTCCTTCTGCTCTTACTCTTCCTTTTCTATACTGAGAAGTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTCCTTCTGCTCTTACTCTTCCTTTTCTATACTGAGAAGTGAAT  334

seq1  ATACACTATTGATTTCAAGAGTTCTGACAAATGCAGCGTACACTACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTATTGATTTCAAGAGTTCTGACAAATGCAGCGTACACTACTTTT  384

seq1  ACATTTTCTTACCCTACTCTTAAGTCCAAATCACAAATGTTGGTACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTACCCTACTCTTAAGTCCAAATCACAAATGTTGGTACTCAT  434

seq1  TTTGAATTCATTGTTATTGAGGTCATTTTTTAAATTACCATAGACTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTCATTGTTATTGAGGTCATTTTTTAAATTACCATAGACTTATT  484

seq1  TGATCTACTGACTATGTACAAGTGTATTGCCCTGCCTGATTTGGAAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACTGACTATGTACAAGTGTATTGCCCTGCCTGATTTGGAAGTAC  534

seq1  TGTATGCTAATAATCCAACACTTGTGTGGCAGATCAGCTTGATCTACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTAATAATCCAACACTTGTGTGGCAGATCAGCTTGATCTACCTT  584

seq1  GGAGACCTTTGTGTTAACAATTTCTACTCTGATTCCATCATGGTTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTTTGTGTTAACAATTTCTACTCTGATTCCATCATGGTTAGAAA  634

seq1  CACTTAATAACTTCAATAAATGTTAAGTTTTACTTTATTTTCGAATGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATAACTTCAATAAATGTTAAGTTTTACTTTATTTTCGAATGTGC  684

seq1  TGATTTTAGTCTTTAATTTTTCTAATCTTTTCATGTGCTACATAAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAGTCTTTAATTTTTCTAATCTTTTCATGTGCTACATAAAGAGA  734

seq1  CTTTAAAATTTCACTTTCTACAATACAATAGTATGAACTCAGATTCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATTTCACTTTCTACAATACAATAGTATGAACTCAGATTCTAAG  784

seq1  TCTACAAATAGTATATGCTTAAATGAGATGCCCATCTCACTAGAGCTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAATAGTATATGCTTAAATGAGATGCCCATCTCACTAGAGCTAAG  834

seq1  AATGGCATTTATTGTGGAATTATTCTAGATTTTTAATTAGAATGCAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATTTATTGTGGAATTATTCTAGATTTTTAATTAGAATGCAAATC  884

seq1  TCCCTCAGTTGGCTAAGAGTGGGTTCTCAGTTCTAAATTCTTTCCTAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGTTGGCTAAGAGTGGGTTCTCAGTTCTAAATTCTTTCCTAACC  934

seq1  ATTACCCAAGGCCTCATTTATTTCTGCAAAAGGCTAATATTTATATTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCAAGGCCTCATTTATTTCTGCAAAAGGCTAATATTTATATTTCT  984

seq1  ATTAATTAAAACATTAAGGCTTAAACAATAAACAACTAGAACCACGAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAAAACATTAAGGCTTAAACAATAAACAACTAGAACCACGAAGT  1034

seq1  AAATAGCAAAGCACTGTTTTAAAACGACAGAGAACTTATAGAAAATAAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAAAGCACTGTTTTAAAACGACAGAGAACTTATAGAAAATAAAG  1084

seq1  GGAGGCCTCGCTTCTGAAACTTTGAGTACTGTAGAGTACAAACTCAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTCGCTTCTGAAACTTTGAGTACTGTAGAGTACAAACTCAATTC  1134

seq1  TGGAATTC  1158
      ||||||||
seq2  TGGAATTC  1142

seq1: chr9_82643341_82644261
seq2: B6Ng01-169O13.g_215_1133

seq1  GACCGCTTATACTGATGAGGATGTGGAGCAAGGGGAACACTCTTCCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCTTATACTGATGAGGATGTGGAGCAAGGGGAACACTCTTCCATTG  50

seq1  CTGGTGGAAATGCAAATGTGTACATCCACTTTGAAGATCAATAGGATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGAAATGCAAATGTGTACATCCACTTTGAAGATCAATAGGATGAT  100

seq1  TTCTCAGAAAATTTGGAATGGATCTACCTCAAGACCCAGCTATTCCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAAATTTGGAATGGATCTACCTCAAGACCCAGCTATTCCACTC  150

seq1  CTGGTTACTCCACCACACTACAAAAACACTTGTTCAACTATGTTCATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTACTCCACCACACTACAAAAACACTTGTTCAACTATGTTCATAGC  200

seq1  AGCTTTATTCATAATAACCAATGTGGTGGCTTGAATAGGCAAGGCCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTCATAATAACCAATGTGGTGGCTTGAATAGGCAAGGCCTCTA  250

seq1  TAGGCTCCTCTGTGTGAATGCTTAGCCCATAAGGGGTGGCATCATTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCCTCTGTGTGAATGCTTAGCCCATAAGGGGTGGCATCATTAGGA  300

seq1  GGTGTGGTCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGGAAATGTGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGGAAATGTGTCAT  350

seq1  TATGGAGGCAGGCTTTGAGGTCATACATTCTCAAGTGATGCCTAGTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGCAGGCTTTGAGGTCATACATTCTCAAGTGATGCCTAGTGAGG  400

seq1  CACACAGTATCTTCCTGCTGCCTTCAGATCAAGATATAGAATTCTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTATCTTCCTGCTGCCTTCAGATCAAGATATAGAATTCTCTGCT  450

seq1  CCTCCAGCACCATGTTTGCCTGCATGATGCCATGTTTACTACCATGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCACCATGTTTGCCTGCATGATGCCATGTTTACTACCATGATTT  500

seq1  ATCATTGTCATGAAGTCTTTTTACAATAATAAAACCAAACTAAGACATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTCATGAAGTCTTTTTACAATAATAAAACCAAACTAAGACATCC  550

seq1  AGAAATGGGAAAAAAAACTAAATACTCCTTAATAGAAGAATAGACGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGAAAAAAAACTAAATACTCCTTAATAGAAGAATAGACGAAGA  600

seq1  AAAGGTAGTACATTTACAAAATGGAGTATTACTCAACCAGTAAAATCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGTACATTTACAAAATGGAGTATTACTCAACCAGTAAAATCAAT  650

seq1  GGCATCATGAAATTTGCCACCAAAAGAATGGAACTAAAAAGGATCATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCATGAAATTTGCCACCAAAAGAATGGAACTAAAAAGGATCATCCT  700

seq1  GAGTGAGGTAACTCAGATCCAAAAAGATACACATGGTATCTACTCACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTAACTCAGATCCAAAAAGATACACATGGTATCTACTCACTTA  750

seq1  TAATGGGATATTAGCTATAAAGCAAAAGTAAACAGTGCTACAATCCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGATATTAGCTATAAAGCAAAAGTAAACAGTGCTACAATCCACAC  800

seq1  ACCCAGAGAAGCTAAGTAATAAGGAAGGCCCCCCGTGGGAGGGAGGAACA  850
      |||||||||||||||||||||||  |||||| |   ||||||||||||||
seq2  ACCCAGAGAAGCTAAGTAATAAG--AGGCCCTCGTGGGGAGGGAGGAACA  848

seq1  TG-TGGATCTCCCTGGGAATGGAAAGCAGAATAGACATTGGAGGTGAAAC  899
      || |||||||||||||| |||| ||||||||||  |||||||||||||||
seq2  TGTTGGATCTCCCTGGG-ATGGGAAGCAGAATAATCATTGGAGGTGAAAC  897

seq1  AGGGTGGGGT-AGAAGGGAATAG  921
      |  ||||||| |||||||| |||
seq2  A-AGTGGGGTAAGAAGGGATTAG  919