BAC Information

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BAC

Clone NameB6Ng01-170F02
Chromosome9 (Build37)
Map Location 50,651,781 - 50,776,879
singlet/doubletdoublet
Overlap genePpp2r1b, Snf1lk2
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9
Downstream geneLayn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F02.bB6Ng01-170F02.g
ACCDH961061DH961062
length1,1511,149
definitionDH961061|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F02, 5' end.DH961062|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,651,781 - 50,652,931)(50,775,693 - 50,776,879)
sequence
gaattccttttcgtaaaatgatagtcccagtgaaatgaaaatgactgatt
tcagttctcctgcaaggtatcctctagataggcattggcaaggagtcccc
catcaggtccgcctgcctgtgacttcaccttctcttacaatatggcacag
cctgtaagccattttctcagtgtctcatgtgatcctcacaactactgtga
ggaggaccagcttcccagacaggagacaaatgaagacggagggctagagc
cttatggttgggcagaaggtgacatctctgctggctgacttctcatgctt
gtgtgagtgtccgcgcctctccgctcatctatgaagaaagcactgcttgg
aaggaggaggaggctgaccagagacccgatcagttgtcagcttctgtagc
tcgtggagttctgtggcacctgtgggttagcccttcctgcagcgctagct
atgtgacattgctgggcctgagctagcaaagcacttgctttggaagtcac
agggtctgctgtgcaccgggttcctgtccctgtgcatcatgttaaggtgc
ctaattcccttaagggggatgggttctagcagtacagagaggaagatctg
atttccacagtttccatgttttcctttttaaagaaaataactttctaatg
tgaagcagccccagtaaagaagacagaaaaacatgtagttgaatgaaccc
tcttggggttctcctctaaaacaatatctggttgcagacggatgaagcaa
aggtgaggtgcccagatggacagaataacaactgggtaggaaagacagat
ggtagccctactgtgtgaacgacccctggcatttcattctctgtgtttga
tgctgtgagtgtaaccttactgaagaaccgagagcgtgtctgagaagcca
aagccctgtaggatgggttggcgatggagcccagtggagagtggctgagt
ggtagagcatgcatttaccatgtgcaaggacctgggttcagttcctaaca
cgtgcaaacacccaaacctacatgtggtacaaattggaccgatttgatca
tcttctggtgcttgaaaatggtaggatcccttgaaacagtgcctgactgc
agcacttgaaccaagcctctactatcacaccatggcatgccacatacatg
c
gaattctcatcgctatgatcttatggcctgtgccatatgcatactggtac
ataactatatattacagttctgtttctccgccaaagtgaactccttgggg
ccaaagagtatttcttacttgtatttctgtcttcaataccttgcagagtg
ctatgacaactttttgtattaagtgattgagaaaattgattttttttaac
attaataagtactggtttgaactaagacttggccaaatctatctcatatt
tatattgattttaactattttcctgttgctaatggctctagagagtatat
aactctgcctgcctgcccacccgccctctctccctccttccttccttctt
tctttctctctttcttcctttcttgacagtgttttgctgtgtatccacag
atgtcctggaactccctctgtagaccaggctagccttgaactcagagatc
cacctacctctgcttcccaagtgccaggatgacaatatataatttcttaa
tttaccaagacatttcaataccctaaacatacttatatgaatattaaaaa
taaggccctagcataagggcactaatggcctagttcttatgtcacttcag
gctctgttatccattacccatacatatgtacaactcgccagttcctctgt
tagtgctctaagaataatggtataaattccttttagagaaccttattgag
gttagtgaaaagaaacaagaacagcaattcagcatgctaatgacccattc
agtttgtttctgaaatatttttgctaattatgctgaatttcctccacatt
tttgttttgtgtttttatttacatatatgatatttactatcaattatttt
gacattccaaataaaatgaatcatggtatgcattgactaattccattcaa
tttaataatttacttagaaacttatatttattaacataatacacattatt
tgtgttctcctagtctgtcttagtctgtttgtgctgttatacatctgagt
ggggacttatgacaatagaaattatttctcacatgctgagctgggagtct
agttctgagctactcaagaagcttttatcctatgtgagtagctcactttc
caataaaggtcaagctagcgaggcttcttttcttggccctttctgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50651781_50652931
seq2: B6Ng01-170F02.b_49_1199

seq1  GAATTCCTTTTCGTAAAATGATAGTCCCAGTGAAATGAAAATGACTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCGTAAAATGATAGTCCCAGTGAAATGAAAATGACTGATT  50

seq1  TCAGTTCTCCTGCAAGGTATCCTCTAGATAGGCATTGGCAAGGAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTCCTGCAAGGTATCCTCTAGATAGGCATTGGCAAGGAGTCCCC  100

seq1  CATCAGGTCCGCCTGCCTGTGACTTCACCTTCTCTTACAATATGGCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTCCGCCTGCCTGTGACTTCACCTTCTCTTACAATATGGCACAG  150

seq1  CCTGTAAGCCATTTTCTCAGTGTCTCATGTGATCCTCACAACTACTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCCATTTTCTCAGTGTCTCATGTGATCCTCACAACTACTGTGA  200

seq1  GGAGGACCAGCTTCCCAGACAGGAGACAAATGAAGACGGAGGGCTAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCAGCTTCCCAGACAGGAGACAAATGAAGACGGAGGGCTAGAGC  250

seq1  CTTATGGTTGGGCAGAAGGTGACATCTCTGCTGGCTGACTTCTCATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTTGGGCAGAAGGTGACATCTCTGCTGGCTGACTTCTCATGCTT  300

seq1  GTGTGAGTGTCCGCGCCTCTCCGCTCATCTATGAAGAAAGCACTGCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGTCCGCGCCTCTCCGCTCATCTATGAAGAAAGCACTGCTTGG  350

seq1  AAGGAGGAGGAGGCTGACCAGAGACCCGATCAGTTGTCAGCTTCTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAGGAGGCTGACCAGAGACCCGATCAGTTGTCAGCTTCTGTAGC  400

seq1  TCGTGGAGTTCTGTGGCACCTGTGGGTTAGCCCTTCCTGCAGCGCTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGAGTTCTGTGGCACCTGTGGGTTAGCCCTTCCTGCAGCGCTAGCT  450

seq1  ATGTGACATTGCTGGGCCTGAGCTAGCAAAGCACTTGCTTTGGAAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACATTGCTGGGCCTGAGCTAGCAAAGCACTTGCTTTGGAAGTCAC  500

seq1  AGGGTCTGCTGTGCACCGGGTTCCTGTCCCTGTGCATCATGTTAAGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGCTGTGCACCGGGTTCCTGTCCCTGTGCATCATGTTAAGGTGC  550

seq1  CTAATTCCCTTAAGGGGGATGGGTTCTAGCAGTACAGAGAGGAAGATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCCCTTAAGGGGGATGGGTTCTAGCAGTACAGAGAGGAAGATCTG  600

seq1  ATTTCCACAGTTTCCATGTTTTCCTTTTTAAAGAAAATAACTTTCTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACAGTTTCCATGTTTTCCTTTTTAAAGAAAATAACTTTCTAATG  650

seq1  TGAAGCAGCCCCAGTAAAGAAGACAGAAAAACATGTAGTTGAATGAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCCCCAGTAAAGAAGACAGAAAAACATGTAGTTGAATGAACCC  700

seq1  TCTTGGGGTTCTCCTCTAAAACAATATCTGGTTGCAGACGGATGAAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGTTCTCCTCTAAAACAATATCTGGTTGCAGACGGATGAAGCAA  750

seq1  AGGTGAGGTGCCCAGATGGACAGAATAACAACTGGGTAGGAAAGACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGTGCCCAGATGGACAGAATAACAACTGGGTAGGAAAGACAGAT  800

seq1  GGTAGCCCTACTGTGTGAACGACCCCTGGCATTTCATTCTCTGTGTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCCTACTGTGTGAACGACCCCTGGCATTTCATTCTCTGTGTTTGA  850

seq1  TGCTGTGAGTGTAACCTTACTGAAGAACCGAGAGCGTGTCTGAGAAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAGTGTAACCTTACTGAAGAACCGAGAGCGTGTCTGAGAAGCCA  900

seq1  AGGCACTGTAGGATGGGTTGGCGATGGAGCCCAGTGGAGAGTGGCTGAGT  950
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTGTAGGATGGGTTGGCGATGGAGCCCAGTGGAGAGTGGCTGAGT  950

seq1  GGTAGAGCATGCATTTACCATGTGCAAGGACCTGGGTTCAGTTCCTAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGCATGCATTTACCATGTGCAAGGACCTGGGTTCAGTTCCTAACA  1000

seq1  CGTGCAAACACACATACCTACATGTGGTACAAAATTGAACGATTTGATCA  1050
      ||||||||||| || |||||||||||||||||| | || |||||||||||
seq2  CGTGCAAACACCCAAACCTACATGTGGTACAAATTGGACCGATTTGATCA  1050

seq1  TCTTCT-GTGCCTGAAAAATGTAAAGATCCC-TGAAACAGTGCCTGACTG  1098
      |||||| |||| || ||||||  | |||||| ||||||||||||||||||
seq2  TCTTCTGGTGCTTG-AAAATGGTAGGATCCCTTGAAACAGTGCCTGACTG  1099

seq1  CAGGCACCTG-ACCAAGCCTCTACATACACACACAT-GCATGCACACATA  1146
      || |||| || |||||||||||||   ||||| ||| |||||| ||||||
seq2  CA-GCACTTGAACCAAGCCTCTACTATCACAC-CATGGCATGC-CACATA  1146

seq1  CATGC  1151
      |||||
seq2  CATGC  1151

seq1: chr9_50775693_50776879
seq2: B6Ng01-170F02.g_66_1214 (reverse)

seq1  TGAACCAGAAAGAAGGCCCCAAGAAAAGAAGCCT--CTGGCCTATGACCT  48
      |||| |||||||  ||  ||||||||||||||||  || ||   ||||| 
seq2  TGAA-CAGAAAG--GG--CCAAGAAAAGAAGCCTCGCTAGC--TTGACC-  42

seq1  TTTCTACCTTTTATTTGAAAATGTAGACTACTTCCCAC-TAGGGTATAAA  97
               |||||| |||| || || |||||   ||| ||||  |||||
seq2  ---------TTTATTGGAAAGTG-AG-CTACT---CACATAGG--ATAAA  76

seq1  AGGCTCTCTTGAGTAAGCTCAGAACTTAAGACTTCCCAGCCTCCAGGCAT  147
      | ||| |||||||| |||||||||||  |||| |||||| |||   ||||
seq2  A-GCT-TCTTGAGT-AGCTCAGAACT--AGAC-TCCCAG-CTC--AGCAT  117

seq1  GTGAGAAATAAATTTCTATTCTTCATAAGTTCCCCACTCAGATGTTATAA  197
      ||||||||| ||||||||||  ||||||| |||||||||||||| |||||
seq2  GTGAGAAAT-AATTTCTATT-GTCATAAG-TCCCCACTCAGATG-TATAA  163

seq1  CAGCACAAAACAGACTAAGACAGACTAGGAGAACACAAATAATGTGTTAT  247
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCAC-AAACAGACTAAGACAGACTAGGAGAACACAAATAATGTG-TAT  211

seq1  TATGTTAATAAAATATAAGTTTCTAAGTTAAATTATTAAATTGAATGGAA  297
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  TATGTTAAT-AAATATAAGTTTCTAAG-TAAATTATTAAATTGAATGGAA  259

seq1  TTAGTCAATGCATACCATGATTCATTTTATTTGGAATGTCAAAATAATTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAATGCATACCATGATTCATTTTATTTGGAATGTCAAAATAATTG  309

seq1  ATAGTAAATATCATATATGTAAATAAAAACACAAAACAAAAATGTGGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAATATCATATATGTAAATAAAAACACAAAACAAAAATGTGGAGG  359

seq1  AAATTCAGCATAATTAGCAAAAATATTTCAGAAACAAACTGAATGGGTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGCATAATTAGCAAAAATATTTCAGAAACAAACTGAATGGGTCA  409

seq1  TTAGCATGCTGAATTGCTGTTCTTGTTTCTTTTCACTAACCTCAATAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGCTGAATTGCTGTTCTTGTTTCTTTTCACTAACCTCAATAAGG  459

seq1  TTCTCTAAAAGGAATTTATACCATTATTCTTAGAGCACTAACAGAGGAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAAAGGAATTTATACCATTATTCTTAGAGCACTAACAGAGGAAC  509

seq1  TGGCGAGTTGTACATATGTATGGGTAATGGATAACAGAGCCTGAAGTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAGTTGTACATATGTATGGGTAATGGATAACAGAGCCTGAAGTGAC  559

seq1  ATAAGAACTAGGCCATTAGTGCCCTTATGCTAGGGCCTTATTTTTAATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACTAGGCCATTAGTGCCCTTATGCTAGGGCCTTATTTTTAATAT  609

seq1  TCATATAAGTATGTTTAGGGTATTGAAATGTCTTGGTAAATTAAGAAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAGTATGTTTAGGGTATTGAAATGTCTTGGTAAATTAAGAAATT  659

seq1  ATATATTGTCATCCTGGCACTTGGGAAGCAGAGGTAGGTGGATCTCTGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTCATCCTGGCACTTGGGAAGCAGAGGTAGGTGGATCTCTGAG  709

seq1  TTCAAGGCTAGCCTGGTCTACAGAGGGAGTTCCAGGACATCTGTGGATAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTAGCCTGGTCTACAGAGGGAGTTCCAGGACATCTGTGGATAC  759

seq1  ACAGCAAAACACTGTCAAGAAAGGAAGAAAGAGAGAAAGAAAGAAGGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAACACTGTCAAGAAAGGAAGAAAGAGAGAAAGAAAGAAGGAAG  809

seq1  GAAGGAGGGAGAGAGGGCGGGTGGGCAGGCAGGCAGAGTTATATACTCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGAGAGAGGGCGGGTGGGCAGGCAGGCAGAGTTATATACTCTC  859

seq1  TAGAGCCATTAGCAACAGGAAAATAGTTAAAATCAATATAAATATGAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCATTAGCAACAGGAAAATAGTTAAAATCAATATAAATATGAGAT  909

seq1  AGATTTGGCCAAGTCTTAGTTCAAACCAGTACTTATTAATGTTAAAAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGCCAAGTCTTAGTTCAAACCAGTACTTATTAATGTTAAAAAAA  959

seq1  ATCAATTTTCTCAATCACTTAATACAAAAAGTTGTCATAGCACTCTGCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTCTCAATCACTTAATACAAAAAGTTGTCATAGCACTCTGCAA  1009

seq1  GGTATTGAAGACAGAAATACAAGTAAGAAATACTCTTTGGCCCCAAGGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGAAGACAGAAATACAAGTAAGAAATACTCTTTGGCCCCAAGGAG  1059

seq1  TTCACTTTGGCGGAGAAACAGAACTGTAATATATAGTTATGTACCAGTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGGCGGAGAAACAGAACTGTAATATATAGTTATGTACCAGTAT  1109

seq1  GCATATGGCACAGGCCATAAGATCATAGCGATGAGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGCACAGGCCATAAGATCATAGCGATGAGAATTC  1149