BAC Information

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BAC

Clone NameB6Ng01-170L18
Chromosome9 (Build37)
Map Location 20,548,110 - 20,732,811
singlet/doubletdoublet
Overlap geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1
Upstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneEdg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L18.bB6Ng01-170L18.g
ACCDH961371DH961372
length1,143972
definitionDH961371|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L18, 5' end.DH961372|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,548,110 - 20,549,255)(20,731,842 - 20,732,811)
sequence
gaattcctgatcccatccctccacacacacacacacaccctgggttacag
gtgtgggccaccatgactagcttctacttgtgatttttttcttcctattt
gcacaggattatatatggattcagctcttggagccggtgtattcattttt
gtggtttcatctgtctgctgcacctgaaggtcagctccaggagggctggg
cctcactgcttcatcaaatctggtgatgtgaacggctgaggaaatgattt
ctcaagaagggttctgttcagggttctgttgggactgcggagaggtgtct
gggactagacagagaaatgagaggggcagagccgctttcctcagaacccc
gcccctctctcttctcctccctgtcctcttttgccctcctcctctccttc
cccctgtggaggcagaccttggttaaccactatttttttttcagccatca
cgtggtgccccctagtggccacctgaagcagtgcagccagtgactgctgc
cccccaagagtcgggattcagatgtccccgcttcagccccagcacgctct
ggcaggtggtccttcccttgctctccaagtagctccatccccaatcggcc
ccgccccaagccccttccctccattcctggggtttctctgcaaactggcc
ttggaactggaaacctaagggtgactcaattactctcagaaactaaagtc
gctttccctcctggttcattttttgccagccattttttaggtatgttttt
ctctttttgtctccttcacacgtggtgtgcctagttccttttgggcttgc
atactgagtgctcactgtgtgcaaccggctgcaccttccccaccctgcgt
gtttgtggctgagatggaccgagcgcaaggaaccccacatcgtctccttg
tagaaatctacccggacctgtctctaccagcacgcgagagtggggtgtaa
ctacagctgattgctctcttattttattcaggagaggaaaggtgtccaga
cccttattttagtgagtttctactagaaactccgcctagtcacgtcaact
caggcgtgtagaacctggagtggattattttccctagctaattcaggacg
aactgcctgtggttctatcttgccgggcactcaactcctgggc
gaattcatttaaaaccgctgcctgtgtgtagcctctgtttgaagcttgag
cccatatttatttcctgttgcttgaaataacgggtgtctggggacaacag
atctccatggatcattgccgttgaggccactctggtcatctagcctgtgc
aaggctctggattccatcacccagcattgcaaaggggaaaagttgggcga
aagcagctgcaatccctaaccaaagggcaagaggcaggcagatctcttga
tgtgaggctctcaaagttgcaacctgactctctcttcagttagcactgga
ctgattctctgtcaccttgctcagaggtgcctctggcaagcacctccagt
gagtcatgtattcttttgaacttggtgattttaagaggtcattgtttagg
agagccccacagttagctactagagaggctgcttctggctcccagaccac
gcccatattgttgtggcctcatgtagctgtgcatggcataaggagagact
gggctctgatagcctcctttccacaaaatggcttatttgagctggcagtt
gtggcgcacgtctttaatcctactatttgggaggcagaggcaggccaatc
tcttgagttcgaggccagtgtggtctatagagtgagttctaggacagaca
gcagcccagagaaaccctgtttccaaaactaaaacacaaaaggtacagct
tttggacccagggcctctgttgggactttttttaagccttgcttacatcc
ctaagtgccctggctcctaatgtgcccatgctggggggtgctttgcttgg
tcttttctgtttgatttagagacatggtttctctggtcttggaactcgct
ctctaaaccaggctgacctcaactcggattctctgtctctgcctctcaag
tgcttgggaaaaatgtgtgtgccaccaccgcctggctttttttttttttt
taatataagcataaaagtataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20548110_20549255
seq2: B6Ng01-170L18.b_46_1188

seq1  GAATTCCTGATCCCATCCCTCCACACACACACACACACCCTGGGTTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCCATCCCTCCACACACACACACACACCCTGGGTTACAG  50

seq1  GTGTGGGCCACCATGACTAGCTTCTACTTGTGATTTTTTTCTTCCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCCACCATGACTAGCTTCTACTTGTGATTTTTTTCTTCCTATTT  100

seq1  GCACAGGATTATATATGGATTCAGCTCTTGGAGCCGGTGTATTCATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGATTATATATGGATTCAGCTCTTGGAGCCGGTGTATTCATTTTT  150

seq1  GTGGTTTCATCTGTCTGCTGCACCTGAAGGTCAGCTCCAGGAGGGCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCATCTGTCTGCTGCACCTGAAGGTCAGCTCCAGGAGGGCTGGG  200

seq1  CCTCACTGCTTCATCAAATCTGGTGATGTGAACGGCTGAGGAAATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGCTTCATCAAATCTGGTGATGTGAACGGCTGAGGAAATGATTT  250

seq1  CTCAAGAAGGGTTCTGTTCAGGGTTCTGTTGGGACTGCGGAGAGGTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGGGTTCTGTTCAGGGTTCTGTTGGGACTGCGGAGAGGTGTCT  300

seq1  GGGACTAGACAGAGAAATGAGAGGGGCAGAGCCGCTTTCCTCAGAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGACAGAGAAATGAGAGGGGCAGAGCCGCTTTCCTCAGAACCCC  350

seq1  GCCCCTCTCTCTTCTCCTCCCTGTCCTCTTTTGCCCTCCTCCTCTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTCTCTTCTCCTCCCTGTCCTCTTTTGCCCTCCTCCTCTCCTTC  400

seq1  CCCCTGTGGAGGCAGACCTTGGTTAACCACTATTTTTTTTTCAGCCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGGAGGCAGACCTTGGTTAACCACTATTTTTTTTTCAGCCATCA  450

seq1  CGTGGTGCCCCCTAGTGGCCACCTGAAGCAGTGCAGCCAGTGACTGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGCCCCCTAGTGGCCACCTGAAGCAGTGCAGCCAGTGACTGCTGC  500

seq1  CCCCCAAGAGTCGGGATTCAGATGTCCCCGCTTCAGCCCCAGCACGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGAGTCGGGATTCAGATGTCCCCGCTTCAGCCCCAGCACGCTCT  550

seq1  GGCAGGTGGTCCTTCCCTTGCTCTCCAAGTAGCTCCATCCCCAATCGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGTCCTTCCCTTGCTCTCCAAGTAGCTCCATCCCCAATCGGCC  600

seq1  CCGCCCCAAGCCCCTTCCCTCCATTCCTGGGGTTTCTCTGCAAACTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCAAGCCCCTTCCCTCCATTCCTGGGGTTTCTCTGCAAACTGGCC  650

seq1  TTGGAACTGGAAACCTAAGGGTGACTCAATTACTCTCAGAAACTAAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTGGAAACCTAAGGGTGACTCAATTACTCTCAGAAACTAAAGTC  700

seq1  GCTTTCCCTCCTGGTTCATTTTTTGCCAGCCATTTTTTAGGTATGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCTCCTGGTTCATTTTTTGCCAGCCATTTTTTAGGTATGTTTTT  750

seq1  CTCTTTTTGTCTCCTTCACACGTGGTGTGCCTAGTTCC-TTTGGGCTTGC  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTTTTTGTCTCCTTCACACGTGGTGTGCCTAGTTCCTTTTGGGCTTGC  800

seq1  ATACTGAGTGCTCACTGTGTGCAACCGGCTGCACCTTCCCCACCCTGCGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGTGCTCACTGTGTGCAACCGGCTGCACCTTCCCCACCCTGCGT  850

seq1  GTTTGT-GCTGAGATGGACCGAGCGCAAGGAACCCCACATCGTCTCCTTG  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGCTGAGATGGACCGAGCGCAAGGAACCCCACATCGTCTCCTTG  900

seq1  TAGAAATCCTACCCGGACCTGTCTCTACCAGCACGCGAGAGTGGGGTGTA  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAT-CTACCCGGACCTGTCTCTACCAGCACGCGAGAGTGGGGTGTA  949

seq1  ACTACAGCTGATTGCCCTCTTATCTTAATCAGAAGAGGAAAGGTGTCCAG  998
      ||||||||||||||| ||||||| ||| |||| |||||||||||||||||
seq2  ACTACAGCTGATTGCTCTCTTATTTTATTCAGGAGAGGAAAGGTGTCCAG  999

seq1  ACCCTTATTTTAGTGAGTTTCTACCTAGAAACCCCGCCTAGTCACGTCGA  1048
      ||||||||||||||||||||||| |||||||| ||||||||||||||| |
seq2  ACCCTTATTTTAGTGAGTTTCTA-CTAGAAACTCCGCCTAGTCACGTCAA  1048

seq1  CCCAGGCAGTGTAGACACTGGAGTGGATCATTTCACAAATGCTAAGTTCA  1098
      | ||||| |||||||  ||||||||||| ||||  |  | ||||| ||||
seq2  CTCAGGC-GTGTAGAACCTGGAGTGGATTATTTTCCCTA-GCTAA-TTCA  1095

seq1  GGAGCGACCTGCCTGT-GTTCTATCTTGTCCGTGCTACT--ACTCCTGGG  1145
      ||| ||| |||||||| ||||||||||| ||| || |||  |||||||||
seq2  GGA-CGAACTGCCTGTGGTTCTATCTTG-CCGGGC-ACTCAACTCCTGGG  1142

seq1  C  1146
      |
seq2  C  1143

seq1: chr9_20731842_20732811
seq2: B6Ng01-170L18.g_68_1039 (reverse)

seq1  TTATACTTTTATACTTATATTAAAAAAAAAAAAAAAAGCCAGGCGGTGGT  50
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TTATACTTTTATGCTTATATT-AAAAAAAAAAAAAAAGCCAGGCGGTGGT  49

seq1  GGCACACACCTTTATCCC-AGCACTTGAGAGGCAGAGACAGAGAATCCGA  99
      ||||||||| ||| |||| |||||||||||||||||||||||||||||||
seq2  GGCACACACATTTTTCCCAAGCACTTGAGAGGCAGAGACAGAGAATCCGA  99

seq1  GTTTGAGGTCAGCCTGGCTTAGAGAGCGAGTTCCAGGA-CAGAGAAACCA  148
      | ||||||||||||||| ||||||||||||||||| || |||||||||||
seq2  G-TTGAGGTCAGCCTGGTTTAGAGAGCGAGTTCCAAGACCAGAGAAACCA  148

seq1  TGTCTCTAAAATCAAACAGAAAAAGACCAAGC-AAGCA-CCCCCAGCATG  196
      ||||||| ||||||||||| |||||||||||| ||||| |||||||||||
seq2  TGTCTCT-AAATCAAACAG-AAAAGACCAAGCAAAGCACCCCCCAGCATG  196

seq1  GGCACATTAGGAGCCAGGGCACTTAGGGATGTAAGCAAGGCTT-AAAAAA  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCACATTAGGAGCCAGGGCACTTAGGGATGTAAGCAAGGCTTAAAAAAA  246

seq1  GTCCCAACAGAGGCCCT-GGTCCAAAAGCTGTACCTTTTGTGTTTTAGTT  294
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCCCAACAGAGGCCCTGGGTCCAAAAGCTGTACCTTTTGTGTTTTAGTT  296

seq1  TTGGAAACAGGGTTTCTCTGGGCTGCTGTCTGTCCTAGAACTCACTCTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACAGGGTTTCTCTGGGCTGCTGTCTGTCCTAGAACTCACTCTAT  346

seq1  AGACCACACTGGCCTCGAACTCAAGAGATTGGCCTGCCTCTGCCTCCCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACACTGGCCTCGAACTCAAGAGATTGGCCTGCCTCTGCCTCCCAA  396

seq1  ATAGTAGGATTAAAGACGTGCGCCACAACTGCCAGCTCAAATAAGCCATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGATTAAAGACGTGCGCCACAACTGCCAGCTCAAATAAGCCATT  446

seq1  TTGTGGAAAGGAGGCTATCAGAGCCCAGTCTCTCCTTATGCCATGCACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAAGGAGGCTATCAGAGCCCAGTCTCTCCTTATGCCATGCACAG  496

seq1  CTACATGAGGCCACAACAATATGGGCGTGGTCTGGGAGCCAGAAGCAGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAGGCCACAACAATATGGGCGTGGTCTGGGAGCCAGAAGCAGCC  546

seq1  TCTCTAGTAGCTAACTGTGGGGCTCTCCTAAACAATGACCTCTTAAAATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTAGCTAACTGTGGGGCTCTCCTAAACAATGACCTCTTAAAATC  596

seq1  ACCAAGTTCAAAAGAATACATGACTCACTGGAGGTGCTTGCCAGAGGCAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTCAAAAGAATACATGACTCACTGGAGGTGCTTGCCAGAGGCAC  646

seq1  CTCTGAGCAAGGTGACAGAGAATCAGTCCAGTGCTAACTGAAGAGAGAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCAAGGTGACAGAGAATCAGTCCAGTGCTAACTGAAGAGAGAGT  696

seq1  CAGGTTGCAACTTTGAGAGCCTCACATCAAGAGATCTGCCTGCCTCTTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCAACTTTGAGAGCCTCACATCAAGAGATCTGCCTGCCTCTTGC  746

seq1  CCTTTGGTTAGGGATTGCAGCTGCTTTCGCCCAACTTTTCCCCTTTGCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTTAGGGATTGCAGCTGCTTTCGCCCAACTTTTCCCCTTTGCAA  796

seq1  TGCTGGGTGATGGAATCCAGAGCCTTGCACAGGCTAGATGACCAGAGTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTGATGGAATCCAGAGCCTTGCACAGGCTAGATGACCAGAGTGG  846

seq1  CCTCAACGGCAATGATCCATGGAGATCTGTTGTCCCCAGACACCCGTTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACGGCAATGATCCATGGAGATCTGTTGTCCCCAGACACCCGTTAT  896

seq1  TTCAAGCAACAGGAAATAAATATGGGCTCAAGCTTCAAACAGAGGCTACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAACAGGAAATAAATATGGGCTCAAGCTTCAAACAGAGGCTACA  946

seq1  CACAGGCAGCGGTTTTAAATGAATTC  970
      ||||||||||||||||||||||||||
seq2  CACAGGCAGCGGTTTTAAATGAATTC  972