BAC Information

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BAC

Clone NameB6Ng01-170O19
Chromosome9 (Build37)
Map Location 65,942,935 - 66,047,932
singlet/doubletdoublet
Overlap geneSnx1, 5730536A07Rik, Dapk2
Upstream geneNope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170O19.bB6Ng01-170O19.g
ACCDH961517DH961518
length1,010925
definitionDH961517|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O19, 5' end.DH961518|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,046,919 - 66,047,932)(65,942,935 - 65,943,863)
sequence
gaattcaggcttccaaagattcctcccaccccaccccctccccatatttt
caacaggtggaagtggggttctttgctagtctccacagactctgatggct
ggctgagggaagggactctttcatcacatctacgttctgggccctttgta
ttggagccgggcttttgcacagactctgaagaacacacacaagcacagcg
ggcacgtgcagacctgcatgcagcactcaggacacaggccaaggatctag
taactctaagcctcgctctccctttcagcagccagggtttgttctttgac
ctcagatcttggcttcagtgccaaaagcaatgtgtgcccgcctgtcttct
ctttaaaacattaactcttcctactgccaggtcgccttcgaggtgagact
tttcagaagctttcagagctctcttacaccgagtaaggaaggtggctggg
agagaagccctcattcccaaacagggaaatggatccccaggctgcagctg
tgcttcgtgctgcatccgtcactgcggcctaagacctgaccttaggagga
caagaccatgtttctgacaggacaatggcatgctgccatggaacccccaa
tccaccctatgggggtcttctgcagtgtggtctcaggaaagccaagctca
cctcaggaaggacacaccatcctttcatggcaaaccatcctatctgattt
caggctcagtgtgtaaagccacatgcttcagacagggaagtaaacagcca
gtagaaagcagagcacgcacttacccttctttgacggaaatcccacaggc
tagcccaggaactccatactagctcagaaaaagtactgttgtgtcttata
aaaagaaccaggatgtgtttgatagagccaggtatggtaaggtgagagag
atgcccggtggcccaatactgaggaatcccttcccgctgaggtaccagcc
acacatgggtagagtgtaaaatggagtttattgaggcatgggagaaatga
gaggggagta
gaattcagaacaaggaccttccttcccctgcagaggactgcattcctttg
ttaaagttaaaggctcctgcagggtgtggtggcacacacctttaatccca
gcacagccaaggctagaaggcttggtagacaggccaaatctcaaaaaaat
gaaaataaaaaggtcaagggtcactgggcagtggtggcgcatgcctttaa
tcccagcacttgggaggcagaggcaggtggatttctgagttcgaggtcag
cctggtctacagagtgagttccaggacagccagggctacacagagaaacc
ctgtctcaaaaaaccaaaaccaaaccaaaacaaaaaggtcaagggtccct
gcacagaaggggactcacagctttgagagtctctccagtgactggaagtc
ttaagcacaggagctatcttaagggtcttaggtattcaaaatgtcatgta
gtccttctcaagttgagaccattttgctccaaagggacatgtgacaatat
ctgaagatgatatgagttgtcccatctagggagggagagctgctagcatc
tagtgggcagagccaaacatctttcagcacagcataacccccacccaaag
gattagccagtccaaaggatttccaaaaacaaaccaccgctctagggtta
cagagtaaggaaggatagattagaaatatccataaagaaagtaaggactt
caggctttgacataccattttcagttaaaaaaaatcattttggaggaaaa
aacctcattacaataatcccatttcattactgtaacaaaaacataacagc
agtcttgccacacgactgacttcattcgagttttctaagatactattttc
tgtattcatgttccttctacttcaggaaatgcttgatattgatactcttt
ttcttatacccttcttcctacactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66046919_66047932
seq2: B6Ng01-170O19.b_45_1054 (reverse)

seq1  TACTCCCCTCTCATTTTCTTCCCATGCCCTCAATAAACTCCATTTTACAC  50
      ||||||||||||||||   ||||||| |||||||||||||||||||||||
seq2  TACTCCCCTCTCATTT--CTCCCATG-CCTCAATAAACTCCATTTTACAC  47

seq1  TCTACCCATGTGTGGCTGGTACCTCAGCGGGAAGGGATTCCTCAGTA-TG  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTACCCATGTGTGGCTGGTACCTCAGCGGGAAGGGATTCCTCAGTATTG  97

seq1  GGCCGCCAAGGCATCTCTCTCACCTTACCATACCTGGCTCTATCAAACAC  149
      |||| ||  |||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACC-GGGCATCTCTCTCACCTTACCATACCTGGCTCTATCAAACAC  146

seq1  ATCCTGGTTCTTTTTATAAGACACAACAGTACTTTTTCCTGAGCTAGTAT  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCCTGGTTCTTTTTATAAGACACAACAGTACTTTTT-CTGAGCTAGTAT  195

seq1  GGAGTTCCTGGGCTAGCCTGTGGGATTTCCGTCAAAGAAGGGTAAGTGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGAGTTCCTGGGCTAGCCTGTGGGATTTCCGTCAAAGAAGGGTAAGTGCG  245

seq1  TGCTCTGCTTTCTACTGGCTGTTTACTTCCCTGTCTGAAGCATGTGGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTTTCTACTGGCTGTTTACTTCCCTGTCTGAAGCATGTGGCTT  295

seq1  TACACACTGAGCCTGAAATCAGATAGGATGGTTTGCCATGAAAGGATGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTGAGCCTGAAATCAGATAGGATGGTTTGCCATGAAAGGATGGT  345

seq1  GTGTCCTTCCTGAGGTGAGCTTGGCTTTCCTGAGACCACACTGCAGAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTCCTGAGGTGAGCTTGGCTTTCCTGAGACCACACTGCAGAAGA  395

seq1  CCCCCATAGGGTGGATTGGGGGTTCCATGGCAGCATGCCATTGTCCTGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATAGGGTGGATTGGGGGTTCCATGGCAGCATGCCATTGTCCTGTC  445

seq1  AGAAACATGGTCTTGTCCTCCTAAGGTCAGGTCTTAGGCCGCAGTGACGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATGGTCTTGTCCTCCTAAGGTCAGGTCTTAGGCCGCAGTGACGG  495

seq1  ATGCAGCACGAAGCACAGCTGCAGCCTGGGGATCCATTTCCCTGTTTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCACGAAGCACAGCTGCAGCCTGGGGATCCATTTCCCTGTTTGGG  545

seq1  AATGAGGGCTTCTCTCCCAGCCACCTTCCTTACTCGGTGTAAGAGAGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGCTTCTCTCCCAGCCACCTTCCTTACTCGGTGTAAGAGAGCTC  595

seq1  TGAAAGCTTCTGAAAAGTCTCACCTCGAAGGCGACCTGGCAGTAGGAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTCTGAAAAGTCTCACCTCGAAGGCGACCTGGCAGTAGGAAGA  645

seq1  GTTAATGTTTTAAAGAGAAGACAGGCGGGCACACATTGCTTTTGGCACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTTTAAAGAGAAGACAGGCGGGCACACATTGCTTTTGGCACTG  695

seq1  AAGCCAAGATCTGAGGTCAAAGAACAAACCCTGGCTGCTGAAAGGGAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGATCTGAGGTCAAAGAACAAACCCTGGCTGCTGAAAGGGAGAG  745

seq1  CGAGGCTTAGAGTTACTAGATCCTTGGCCTGTGTCCTGAGTGCTGCATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTTAGAGTTACTAGATCCTTGGCCTGTGTCCTGAGTGCTGCATGC  795

seq1  AGGTCTGCACGTGCCCGCTGTGCTTGTGTGTGTTCTTCAGAGTCTGTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCACGTGCCCGCTGTGCTTGTGTGTGTTCTTCAGAGTCTGTGCA  845

seq1  AAAGCCCGGCTCCAATACAAAGGGCCCAGAACGTAGATGTGATGAAAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCGGCTCCAATACAAAGGGCCCAGAACGTAGATGTGATGAAAGAG  895

seq1  TCCCTTCCCTCAGCCAGCCATCAGAGTCTGTGGAGACTAGCAAAGAACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCCTCAGCCAGCCATCAGAGTCTGTGGAGACTAGCAAAGAACCC  945

seq1  CACTTCCACCTGTTGAAAATATGGGGAGGGGGTGGGGTGGGAGGAATCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCACCTGTTGAAAATATGGGGAGGGGGTGGGGTGGGAGGAATCTT  995

seq1  TGGAAGCCTGAATTC  1014
      |||||||||||||||
seq2  TGGAAGCCTGAATTC  1010

seq1: chr9_65942935_65943863
seq2: B6Ng01-170O19.g_65_989

seq1  GAATTCAGAACAAGGACCTTCCTTCCCCTGCAGAGGACTGCATTCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACAAGGACCTTCCTTCCCCTGCAGAGGACTGCATTCCTTTG  50

seq1  TTAAAGTTAAAGGCTCCTGCAGGGTGTGGTGGCACACACCTTTAATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTAAAGGCTCCTGCAGGGTGTGGTGGCACACACCTTTAATCCCA  100

seq1  GCACAGCCAAGGCTAGAAGGCTTGGTAGACAGGCCAAATCTCAAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCAAGGCTAGAAGGCTTGGTAGACAGGCCAAATCTCAAAAAAAT  150

seq1  GAAAATAAAAAGGTCAAGGGTCACTGGGCAGTGGTGGCGCATGCCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAAAGGTCAAGGGTCACTGGGCAGTGGTGGCGCATGCCTTTAA  200

seq1  TCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGTCAG  250

seq1  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  300

seq1  CTGTCTCAAAAAACCAAAACCAAACCAAAACAAAAAGGTCAAGGGTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAAAACCAAAACCAAACCAAAACAAAAAGGTCAAGGGTCCCT  350

seq1  GCACAGAAGGGGACTCACAGCTTTGAGAGTCTCTCCAGTGACTGGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAGGGGACTCACAGCTTTGAGAGTCTCTCCAGTGACTGGAAGTC  400

seq1  TTAAGCACAGGAGCTATCTTAAGGGTCTTAGGTATTCAAAATGTCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCACAGGAGCTATCTTAAGGGTCTTAGGTATTCAAAATGTCATGTA  450

seq1  GTCCTTCTCAAGTTGAGACCATTTTGCTCCAAAGGGACATGTGACAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTCAAGTTGAGACCATTTTGCTCCAAAGGGACATGTGACAATAT  500

seq1  CTGAAGATGATATGAGTTGTCCCATCTAGGGAGGGAGAGCTGCTAGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATGATATGAGTTGTCCCATCTAGGGAGGGAGAGCTGCTAGCATC  550

seq1  TAGTGGGCAGAGCCAAACATCTTTCAGCACAGCATAACCCCCACCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGCAGAGCCAAACATCTTTCAGCACAGCATAACCCCCACCCAAAG  600

seq1  GATTACCCAGTCCAAAGGATTTCCAAAAACAAACCACCGCTCTAGGGTTA  650
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCCAGTCCAAAGGATTTCCAAAAACAAACCACCGCTCTAGGGTTA  650

seq1  CAGAGTAAGGAAGGATAGATTAGAAATATCCAGAAAGAAAGAAAGGACTC  700
      |||||||||||||||||||||||||||||||| |||||||| ||||||| 
seq2  CAGAGTAAGGAAGGATAGATTAGAAATATCCATAAAGAAAGTAAGGACTT  700

seq1  AAGGCTTTGACAGACCATTTTCAGTTAAAAAAAATCATTTTGGAGGAAAA  750
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTGACATACCATTTTCAGTTAAAAAAAATCATTTTGGAGGAAAA  750

seq1  AACCTCATTACAATAATCCCATTTTCATTACAGTAACAAAAACATAACAG  800
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AACCTCATTACAATAATCCCA-TTTCATTACTGTAACAAAAACATAACAG  799

seq1  CAGTCTTGCCACACGACTGACTTCATTCGAGTTTTCTAAGATACTATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTCTTGCCACACGACTGACTTCATTCGAGTTTTCTAAGATACTATTTT  849

seq1  CTGCAATCATGTGCCTTCTGCTTCAGGGAATACTTGCTATTTGATGCTTC  900
      ||| | |||||| |||||| ||||||| ||| |||| || ||||| ||  
seq2  CTGTATTCATGTTCCTTCTACTTCAGGAAATGCTTGATA-TTGATACTCT  898

seq1  TTTTCTTATACCCTTATTTCTTTACACTT  929
      ||||||||||||||| || |  |||||||
seq2  TTTTCTTATACCCTTCTTCC--TACACTT  925