BAC Information

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BAC

Clone NameB6Ng01-170P02
Chromosome9 (Build37)
Map Location 45,430,508 - 45,548,774
singlet/doubletdoublet
Overlap geneDscaml1
Upstream geneDdx6, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream geneCep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P02.bB6Ng01-170P02.g
ACCDH961531DH961532
length1,0631,125
definitionDH961531|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P02, 5' end.DH961532|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,547,708 - 45,548,774)(45,430,508 - 45,431,651)
sequence
gaattctgcaaatgagcttctggaagcttctatcagaccctaggcacagg
cttctcacccttgccagcaggttcaatggtgaccttctcgctgctgttcc
ccctgcctgcagaggtgaccgcagccacccatagcaagtactgctgtccc
cggttcaggtgggcgatccggtagaagagctgttcaggactggtctcgta
ctcgctgggagcctgtgggcggagacaaagtcacactatgaaacagaaac
cgtgccttggccccttgcctgccattgtccttggtgtccttggacaggat
ctgtccagcacgctctttcccagcctgagaaaggcagtggacagtactgt
gctgggctcaaccccgggagctgatggagctagtcctgcagtatttgtag
gccaaccttggtacccctctcggttatataggctttagtagctgtggcta
caggccaacacatatgggtattttgagtaaatgatgagaggcagtcagag
aaaggagaatgagggacttggggtcccaggaagaccacatgcaaagagaa
aggttctgtggagaagccaaatgactgcctttgccttgttagggctgtag
ccagccctccagcctgtcccctgcctagtcacctccccgccctgccacct
aattacactctttccttctcaggatggggtagagaggcagtggggagagt
tgtactgggcagtactttattagtgattattagtagtatggatcgctata
tatatttgtaggttacataaatctataacatttttttaaccaaatgacag
tttttgacaagttgcctacaaaaacaatatcagattccagtggtttcacc
agttgctttgatgaaaaagattatgtgccttggaaaccagaggctcagat
attgaaatgatttgagaaggcgctttgataagcgctagtttgtagccctc
tgtcagcctcttcttggcatcggcggatggggctgactttcatttaatta
ttttattctttttggccagccgccaggaatgggggagagaaagcactatg
ggcccctctgaga
gaattcaatgagcttatactcatggtacctgccacagccctcaggaaggc
tgtttcagtaatctggatatgagaaggtagtggggacaagtcttgacccg
agaagatatccctgggggctgcagcagtaagaaggagccatgacagaagc
cttctctttgtgtccaccaacggtcccacccagaggacttaccacagaag
agctggcttgcttgtctaccctaaacaatagggcccaatggggctaaggg
gtggaggtggggcggtagggcatgtcctagggcatctcgccctgtcaaaa
aataaaaaggtcaccttgttcttggtaccatgcaaggcaagccagacccc
atctttgtcaccccaaagctaagatattaaatacactgaatatctacaaa
attcagtgaaaaggaatttgaactccttagagatgtcagcccaggtaggg
gaaacagtccctcctccaggaacctccctgcagccaaatctgcagaaaat
acagaatggtgacatagcccagcagggagggcggggctcttcctgcgtat
agaatcagggtctgaatctcaggagagggttaaaatagctggattgtggt
tacacagtgacaaagaacagagccaggattcaagcccaattttgtcagac
accctgtccaagcgctttcctcactactacactcaggcttactgattccc
tcagcaaacgaggtggggcatctcccgtaacagcacatcgctttataagt
accacatcaaaacacgcacgtggagacgaggggaggatttcagagacaga
agcattgggcaaggcagagggacagaggaagactggggaatgagaggctc
ttctagaagattctctctggcactctacactcaaagagcacccccaagag
acctcgacactcaactgaacacattgaggcctcttccctttgacatactc
ttcagcaaaggtgagaagcagagaatggggagctagactgtgtacgtgtc
actaagtcacacagtgctgcatacaccctaaagtgggggaaaagaaagca
cagaagagtcttgggggaagttgtgttgaaacccttccagcctcaccaac
actcctggactgggagctaaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_45547708_45548774
seq2: B6Ng01-170P02.b_49_1111 (reverse)

seq1  TCTCAGAGGGGCCC-TAGTGCTCTCCTCTCCCCCATTCCCTGCGGCTGGC  49
      |||||||||||||| ||||||| | ||||||||||||||  |||||||||
seq2  TCTCAGAGGGGCCCATAGTGCT-TTCTCTCCCCCATTCCTGGCGGCTGGC  49

seq1  CAAAAA-AATAAAATAAAATAAAATGAAAGTCAGCCCCATCCGGCCGATG  98
      |||||| ||||||||  ||| ||||||||||||||||||||| |||||||
seq2  CAAAAAGAATAAAAT--AATTAAATGAAAGTCAGCCCCATCC-GCCGATG  96

seq1  CCAAGGAAGAGGCTGACAGGAGGGCTACAAACTAGCGCTTATCAAAAGCG  148
      |||| ||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CCAA-GAAGAGGCTGACA-GAGGGCTACAAACTAGCGCTTATC-AAAGCG  143

seq1  CCTTCTCAAATTCATTTCAATATCTGAGCCTCTGGTTTCCAAGGCAACAT  198
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CCTTCTCAAA-TCATTTCAATATCTGAGCCTCTGGTTTCCAAGGC-ACAT  191

seq1  AATC-TTTTCATCAAAGCAACTGGTGAAACCACTGGGATCTGATATTG-T  246
      |||| ||||||||||||||||||||||||||||||| ||||||||||| |
seq2  AATCTTTTTCATCAAAGCAACTGGTGAAACCACTGGAATCTGATATTGTT  241

seq1  TTTGTTGGCAACTTGTC-AAAACTGTCATTTGGTTAAAAAAATGTTATAG  295
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGTAGGCAACTTGTCAAAAACTGTCATTTGGTTAAAAAAATGTTATAG  291

seq1  ATTTATGTAACCTACAAATATATATAGCGATCCATACTACTAATAATCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTAACCTACAAATATATATAGCGATCCATACTACTAATAATCAC  341

seq1  TAATAAAGTACTGCCCAGTACAACTCTCCCCACTGCCTCTCTACCCCATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGTACTGCCCAGTACAACTCTCCCCACTGCCTCTCTACCCCATC  391

seq1  CTGAGAAGGAAAGAGTGTAATTAGGTGGCAGGGCGGGGAGGTGACTAGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGAAAGAGTGTAATTAGGTGGCAGGGCGGGGAGGTGACTAGGC  441

seq1  AGGGGACAGGCTGGAGGGCTGGCTACAGCCCTAACAAGGCAAAGGCAGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAGGCTGGAGGGCTGGCTACAGCCCTAACAAGGCAAAGGCAGTC  491

seq1  ATTTGGCTTCTCCACAGAACCTTTCTCTTTGCATGTGGTCTTCCTGGGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTCTCCACAGAACCTTTCTCTTTGCATGTGGTCTTCCTGGGAC  541

seq1  CCCAAGTCCCTCATTCTCCTTTCTCTGACTGCCTCTCATCATTTACTCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCCCTCATTCTCCTTTCTCTGACTGCCTCTCATCATTTACTCAA  591

seq1  AATACCCATATGTGTTGGCCTGTAGCCACAGCTACTAAAGCCTATATAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCATATGTGTTGGCCTGTAGCCACAGCTACTAAAGCCTATATAAC  641

seq1  CGAGAGGGGTACCAAGGTTGGCCTACAAATACTGCAGGACTAGCTCCATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGGGGTACCAAGGTTGGCCTACAAATACTGCAGGACTAGCTCCATC  691

seq1  AGCTCCCGGGGTTGAGCCCAGCACAGTACTGTCCACTGCCTTTCTCAGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCGGGGTTGAGCCCAGCACAGTACTGTCCACTGCCTTTCTCAGGC  741

seq1  TGGGAAAGAGCGTGCTGGACAGATCCTGTCCAAGGACACCAAGGACAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGAGCGTGCTGGACAGATCCTGTCCAAGGACACCAAGGACAATG  791

seq1  GCAGGCAAGGGGCCAAGGCACGGTTTCTGTTTCATAGTGTGACTTTGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAGGGGCCAAGGCACGGTTTCTGTTTCATAGTGTGACTTTGTCT  841

seq1  CCGCCCACAGGCTCCCAGCGAGTACGAGACCAGTCCTGAACAGCTCTTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCACAGGCTCCCAGCGAGTACGAGACCAGTCCTGAACAGCTCTTCT  891

seq1  ACCGGATCGCCCACCTGAACCGGGGACAGCAGTACTTGCTATGGGTGGCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGATCGCCCACCTGAACCGGGGACAGCAGTACTTGCTATGGGTGGCT  941

seq1  GCGGTCACCTCTGCAGGCAGGGGGAACAGCAGCGAGAAGGTCACCATTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCACCTCTGCAGGCAGGGGGAACAGCAGCGAGAAGGTCACCATTGA  991

seq1  ACCTGCTGGCAAGGGTGAGAAGCCTGTGCCTAGGGTCTGATAGAAGCTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGGCAAGGGTGAGAAGCCTGTGCCTAGGGTCTGATAGAAGCTTC  1041

seq1  CAGAAGCTCATTTGCAGAATTC  1067
      ||||||||||||||||||||||
seq2  CAGAAGCTCATTTGCAGAATTC  1063

seq1: chr9_45430508_45431651
seq2: B6Ng01-170P02.g_69_1193

seq1  GAATTCAATGAGCTTATACTCATGGTACCTGCCACAGCCCTCAGGAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAGCTTATACTCATGGTACCTGCCACAGCCCTCAGGAAGGC  50

seq1  TGTTTCAGTAATCTGGATATGAGAAGGTAGTGGGGACAAGTCTTGACCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTAATCTGGATATGAGAAGGTAGTGGGGACAAGTCTTGACCCG  100

seq1  AGAAGATATCCCTGGGGGCTGCAGCAGTAAGAAGGAGCCATGACAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATATCCCTGGGGGCTGCAGCAGTAAGAAGGAGCCATGACAGAAGC  150

seq1  CTTCTCTTTGTGTCCACCAACGGTCCCACCCAGAGGACTTACCACAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTGTGTCCACCAACGGTCCCACCCAGAGGACTTACCACAGAAG  200

seq1  AGCTGGCTTGCTTGTCTACCCTAAACAATAGGGCCCAATGGGGCTAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTTGCTTGTCTACCCTAAACAATAGGGCCCAATGGGGCTAAGGG  250

seq1  GTGGAGGTGGGGCGGTAGGGCATGTCCTAGGGCATCTCGCCCTGTCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTGGGGCGGTAGGGCATGTCCTAGGGCATCTCGCCCTGTCAAAA  300

seq1  AATAAAAAGGTCACCTTGTTCTTGGTACCATGCAAGGCAAGCCAGACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGGTCACCTTGTTCTTGGTACCATGCAAGGCAAGCCAGACCCC  350

seq1  ATCTTTGTCACCCCAAAGCTAAGATATTAAATACACTGAATATCTACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTCACCCCAAAGCTAAGATATTAAATACACTGAATATCTACAAA  400

seq1  ATTCAGTGAAAAGGAATTTGAACTCCTTAGAGATGTCAGCCCAGGTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGAAAAGGAATTTGAACTCCTTAGAGATGTCAGCCCAGGTAGGG  450

seq1  GAAACAGTCCCTCCTCCAGGAACCTCCCTGCAGCCAAATCTGCAGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTCCCTCCTCCAGGAACCTCCCTGCAGCCAAATCTGCAGAAAAT  500

seq1  ACAGAATGGTGACATAGCCCAGCAGGGAGGGCGGGGCTCTTCCTGCGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGGTGACATAGCCCAGCAGGGAGGGCGGGGCTCTTCCTGCGTAT  550

seq1  AGAATCAGGGTCTGAATCTCAGGAGAGGGTTAAAATAGCTGGATTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGGGTCTGAATCTCAGGAGAGGGTTAAAATAGCTGGATTGTGGT  600

seq1  TACACAGTGACAAAGAACAGAGCCAGGATTCAAGCCCAATTTTGTCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGACAAAGAACAGAGCCAGGATTCAAGCCCAATTTTGTCAGAC  650

seq1  ACCCTGTCCAAGCGCTTTCCTCACTACTACACTCAGGCTTACTGATTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCCAAGCGCTTTCCTCACTACTACACTCAGGCTTACTGATTCCC  700

seq1  TCAGCAAACGAGGTGGGGCATCTCCCGTAACAGCACATCGCTTTATAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACGAGGTGGGGCATCTCCCGTAACAGCACATCGCTTTATAAGT  750

seq1  ACCACATCAAAACACGCACGTGGAGACGAGGGGAGGATTTCAGAGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCAAAACACGCACGTGGAGACGAGGGGAGGATTTCAGAGACAGA  800

seq1  AGCATTGGGCAAGGCAGAGGGACAGAGGAAGACTGGGGAATGAGAGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGGCAAGGCAGAGGGACAGAGGAAGACTGGGGAATGAGAGGCTC  850

seq1  -TCTAGAAGATTCTCTCTGGCACTCTACACTCAAAGAGCA-CCCCAAGAG  898
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTAGAAGATTCTCTCTGGCACTCTACACTCAAAGAGCACCCCCAAGAG  900

seq1  ACCTCGACACTCAACTGAACACATTGAGGCCCCTCCCCTTTGACATAACT  948
      ||||||||||||||||||||||||||||||| || ||||||||||| |||
seq2  ACCTCGACACTCAACTGAACACATTGAGGCCTCTTCCCTTTGACAT-ACT  949

seq1  CTTCAGGCAAAAGGTGAGAAGCAGAGAATGGGGAGCTAGACTGTGTACGT  998
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAG--CAAAGGTGAGAAGCAGAGAATGGGGAGCTAGACTGTGTACGT  997

seq1  GTCACTAAGTCACACAGGTGCTGCCACAACAC-CCCAAAAGTGGGGGAAA  1047
      |||||||||||||||| |||||||    | || ||| |||||||||||||
seq2  GTCACTAAGTCACACA-GTGCTGC----ATACACCCTAAAGTGGGGGAAA  1042

seq1  AGAAAAGCCACAGAAAGGAGTCTTGGGGAGAAGTTGTGGTGGAGACCCCT  1097
      |||||   |||||||  ||||||||||| |||||||| || || |||| |
seq2  AGAAA--GCACAGAA--GAGTCTTGGGG-GAAGTTGT-GTTGAAACCCTT  1086

seq1  CCCCAGCCTCACACAAACAACTC-CCTGAGCTTGGGGAGCTAAGGAAA  1144
        ||||||||||     |||| | ||||  ||  ||||||||||||||
seq2  --CCAGCCTCAC-----CAACACTCCTGGACT--GGGAGCTAAGGAAA  1125