BAC Information

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BAC

Clone NameB6Ng01-171M16
Chromosome9 (Build37)
Map Location 67,871,156 - 67,872,125
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171M16.bB6Ng01-171M16.g
ACCGA000579GA000580
length683965
definitionB6Ng01-171M16.b B6Ng01-171M16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgggtgtgtgaacaagtgagtctctgtgtctttatctgtttct
tgtgccttttcttgggctcttttccttctgtttattttgtcctattccaa
atcgtttgttttggtattatcagtatagtatattatatttcactatagta
cagtacagtatagttatagcatagtgtagtatagtattgtatagtatagt
atagtatagtacagtatgttgctatatcctcttcagatgcctgactgttt
tctactgagagatagagaggtgatggacccagatgggtggagaggtggga
ggaactggaaggaatacaaggaggagaaatcataatcaaaatatattgta
taaaaaaaaaacctggtttcaataaaagaaaaggaatccaagactttttt
gatcagactatgtgatgttccctctcctcacaagtattcattgagggctt
cactgggactcattcctacttagaactgagaggaaaattcttaaaacttt
gattgtgtgagctggggataaaactaagtagataaagtgcttgttatatg
aacatgaggccctgagctctgtgccccagaaccaacctcgggagctgagc
acaggggcatgtgtctgtcactcccagagctgcagaggcagtgccaagag
gatgcaaagctcagtgggcaaactcccaggttc

gaattccatttagccttttagatggctagtctggctttccttgggggcgt
ctatggaacctcatctgatatccttgaaggtctaatagagaaatgatgga
cttgctagcatgcctgtggtggatcatgaacctgtagccactgggtatgt
ttagggagtcacggcagagttgaggtgtctaaggctacaatgggacttgg
aacccatcctgcttaacgctcacattgaccatttgtgtgaagacatggag
agtataaatatttagtctatagaagactcagaaatgatgagcattcccag
atgaaatcaaaaggcacggacacttcatattaagaaggggattctggact
gaggcgtgatctgatggagaagcaaatgtgcctgcactaagaagtgagcc
ttgtgctctgatccagagcaatgatggcattgaaatatcttggacagagg
agcagacagcattggatcctgactcaggcttttgtattaggagaaccctt
tgcaaggctgaccctgcactggccttgctagggtaatcacaggcctggga
ccatcacattaggaatgagagaaaggcatgaggactacttggcctggggt
agagggcatacgtggagcatcccttagtaggttcttgaggcacgcactct
gatccaggggttgggtacgtgtattttgataggaaattccatacaacagt
ggaagggtcctgatgaggggaataaaatggggaaggtgctacctttgagt
aattggagatttgacaactggggggagctgtagggagtgggatgctgaat
atattttagtatccattcttcaagagggatgggacatgacttgatggcaa
caccattctgtcttgtaagctgtgcccaaggtcttcccaagactcaaaga
ttgaaggtgcttgctaatggggggctggtagacaagcctccccacaattg
cttcatgctactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67871156_67872125
seq2: B6Ng01-171M16.g_66_1030

seq1  GAATTCCATTTAGCCTTTTAGATGGCTAGTCTGGCTTTCCTTGGGGGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGCCTTTTAGATGGCTAGTCTGGCTTTCCTTGGGGGCGT  50

seq1  CTATGGAACCTCATCTGATATCCTTGAAGGTCTAATAGAGAAATGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAACCTCATCTGATATCCTTGAAGGTCTAATAGAGAAATGATGGA  100

seq1  CTTGCTAGCATGCCTGTGGTGGATCATGAACCTGTAGCCACTGGGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAGCATGCCTGTGGTGGATCATGAACCTGTAGCCACTGGGTATGT  150

seq1  TTAGGGAGTCACGGCAGAGTTGAGGTGTCTAAGGCTACAATGGGACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGTCACGGCAGAGTTGAGGTGTCTAAGGCTACAATGGGACTTGG  200

seq1  AACCCATCCTGCTTAACGCTCACATTGACCATTTGTGTGAAGACATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCCTGCTTAACGCTCACATTGACCATTTGTGTGAAGACATGGAG  250

seq1  AGTATAAATATTTAGTCTATAGAAGACTCAGAAATGATGAGCATTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAATATTTAGTCTATAGAAGACTCAGAAATGATGAGCATTCCCAG  300

seq1  ATGAAATCAAAAGGCACGGACACTTCATATTAAGAAGGGGATTCTGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCAAAAGGCACGGACACTTCATATTAAGAAGGGGATTCTGGACT  350

seq1  GAGGCGTGATCTGATGGAGAAGCAAATGTGCCTGCACTAAGAAGTGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGTGATCTGATGGAGAAGCAAATGTGCCTGCACTAAGAAGTGAGCC  400

seq1  TTGTGCTCTGATCCAGAGCAATGATGGCATTGAAATATCTTGGACAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCTGATCCAGAGCAATGATGGCATTGAAATATCTTGGACAGAGG  450

seq1  AGCAGACAGCATTGGATCCTGACTCAGGCTTTTGTATTAGGAGAACCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAGCATTGGATCCTGACTCAGGCTTTTGTATTAGGAGAACCCTT  500

seq1  TGCAAGGCTGACCCTGCACTGGCCTTGCTAGGGTAATCACAGGCCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCTGACCCTGCACTGGCCTTGCTAGGGTAATCACAGGCCTGGGA  550

seq1  CCATCACATTAGGAATGAGAG-AAGGCATGAGGACTACTTGGCCTGGGGT  599
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCATCACATTAGGAATGAGAGAAAGGCATGAGGACTACTTGGCCTGGGGT  600

seq1  AGAGGGCATACGTGGAGCATCCCTTAGTAGGTTCTTGAGGCACGCACTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATACGTGGAGCATCCCTTAGTAGGTTCTTGAGGCACGCACTCT  650

seq1  GATCCAGGGGTTGGGTACGTGTATTTTGATAGGAAATTCCATACAACAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGGGTTGGGTACGTGTATTTTGATAGGAAATTCCATACAACAGT  700

seq1  GGAAGGGGTCCTGATGAGGGGAATAAAATGGGGAAGGTGGCTACC-TTGA  748
      |||| ||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GGAA-GGGTCCTGATGAGGGGAATAAAATGGGGAAGGT-GCTACCTTTGA  748

seq1  GTAATTGGAGATTTGAC-ACT-GGGGGAGCTGTAGGGAGTGGGATGCTGA  796
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  GTAATTGGAGATTTGACAACTGGGGGGAGCTGTAGGGAGTGGGATGCTGA  798

seq1  ATATATTTTAGTTATCCCATCCTTCCAGAGGGGATGGGACATGACTTGTA  846
      ||||||||||| ||| |||| |||| ||| |||||||||||||||||| |
seq2  ATATATTTTAG-TAT-CCATTCTTCAAGA-GGGATGGGACATGACTTG-A  844

seq1  TGGCAACACCCATCTGTCTTTGTAGCTGTGCCCAGAGGTCTTCCCAAGGA  896
      ||||||||||  ||||||||   ||||||||||| |||||||||||| ||
seq2  TGGCAACACCATTCTGTCTTGTAAGCTGTGCCCA-AGGTCTTCCCAA-GA  892

seq1  CTCAAAGAGTG-AGGTGCCTGGTAATGGGGGGCTTGGTGAGCAGGCTCCC  945
      |||||||| || |||||| || |||||||||||| |  ||  || |||||
seq2  CTCAAAGATTGAAGGTGCTTGCTAATGGGGGGCTGGTAGACAAGCCTCCC  942

seq1  CACACATGTGTCACAGGCTACTGTC  970
      ||||  ||  |  || |||||||||
seq2  CACAATTGCTT--CATGCTACTGTC  965


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