BAC Information

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BAC

Clone NameB6Ng01-171P02
Chromosome9 (Build37)
Map Location 111,639,730 - 111,640,820
singlet/doubletsinglet
Overlap genenone
Upstream genePthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171P02.bB6Ng01-171P02.g
ACCGA000693GA000694
length1,0941,028
definitionB6Ng01-171P02.b B6Ng01-171P02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcactctgttcatggcttctgcttcctgattgggttcctgct
tgactccctcagagctgaactatgatctgaaagcgtaagctgagtaaagc
tgttcctcttctaagctgcttttactcacacaaacagaaagaagaccaga
gtagtggtcccttgttttgctgcttagatttgtggttgttgtatgcttgt
ttgctggttatgagagagattgtactgggaaggtcagtgttggtggctta
ggtcacacatacattgtttaccagatatttcttgcctgtgactttctggt
aaccccactttgctatgacccatgccactaaactttccagaaacaaacaa
acaaacaaacaagccaacacccatagtctctcgtgtctattctaagcaga
ttctggcttcccagagcatgaatgatcaagtctttgtatcaaaggatggg
tgttatgatctgccacaggtgatggatgggtcagtaggccgcagcatccg
tgtcacatgcctgtcctgtcagaaatccacagataagcagaattcgtggc
actgggaacagttagaagtcctagagcccaaacgtctgagaagcagagcc
tttgatgctaaagcaagaataagatggacatttcagcatcagaagagcac
atgaacattcattcacctccctacgccacccaggtttcagcagaccagac
acctctcctccatactggtgagggccatctcttcacctgttagcaaccac
tgatgcagatcccttctgaaacatcctggaggatacaggcagaagtgaca
ctttacccagccatcagggcatctctcagtccagccaaattgacagagaa
tatcagctgtcacatcagcctgacattaatgatgctaatccatctctctg
ttgattattaatcatgactattattatgtgaccatgacagacttaattcc
tttcctaagggaaagaacctcccaaaccctgtatttatgaaccacatcta
ccgtcctggtctcttgttagcagagcatgttctagcagaaagaaataggg
gagactgcgtttttagttgccaacaatctccatcacttgactca
gaattctcccaatatgctgttcttgctttcttctgtggtgtaaattggca
aagatgacctgatcagaatcaaacaaagcacaggcaggtggtaggaggca
gacatgtgcacacgtgcttcattaggtagaagagagggctctgggtagga
atagcataccttgaaatcagatagaaatatgactcactgagtagtagttg
aattgggtaacatagatcagattgtgaagccagtctatagagtgtgagct
ttaatacagaggtgtaagaatatttgcaaagccaccaatagtcccaagaa
ggagttgtccttgagatgagaggaaacagtgtggaaagggtctgagattt
ggaatactttataggaagggctttctgactaggactccaatgactaaggg
aacagagtcagcaatgaacaaatgggatctcatgaaatcaaaaacttcta
tgcagcaaaaggtgctttcaaccaactgaagagacagcctacagaatggg
ggaaagtctttaccagttaagtacctggtgaaggcttgctgccaagaata
tacaaagaatgcaagaaactaaacatcaaggagacaaatgaccccatcaa
accaacgacactaacatgggctacggacctgaacacagtgttctcaaaaa
gaagaatttatgaaaatggatacaaaacatctttaacttgtttgatatcg
ttagccactaggaaaatgcaaattaaaactgctttgaaatttcacctttc
tccaaccacaatagctgtcatcaagaaatcaaattaagacagtgttggct
aggatgtgaaagaaataaaaatgctcacccactgttggtgggagtgtaaa
aggatgcagacactttggaaatcagccaaaagtttctaaagagctaaaag
tagaactactatagattcagctatacctctcctcagcatatgcctgaagc
actcataccctcctagagaggcactgcacatctgtttttactgccacact
attggatggtgagctaggaaaatcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111639730_111640820
seq2: B6Ng01-171P02.b_43_1136

seq1  GAATTCTTTCACTCTGTTCATGGCTTCTGCTTCCTGATTGGGTTCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTCTGTTCATGGCTTCTGCTTCCTGATTGGGTTCCTGCT  50

seq1  TGACTCCCTCAGAGCTGAACTATGATCTGAAAGCGTAAGCTGAGTAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCAGAGCTGAACTATGATCTGAAAGCGTAAGCTGAGTAAAGC  100

seq1  TGTTCCTCTTCTAAGCTGCTTTTACTCACACAAACAGAAAGAAGACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTTCTAAGCTGCTTTTACTCACACAAACAGAAAGAAGACCAGA  150

seq1  GTAGTGGTCCCTTGTTTTGCTGCTTAGATTTGTGGTTGTTGTATGCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTCCCTTGTTTTGCTGCTTAGATTTGTGGTTGTTGTATGCTTGT  200

seq1  TTGCTGGTTATGAGAGAGATTGTACTGGGAAGGTCAGTGTTGGTGGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTTATGAGAGAGATTGTACTGGGAAGGTCAGTGTTGGTGGCTTA  250

seq1  GGTCACACATACATTGTTTACCAGATATTTCTTGCCTGTGACTTTCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACATACATTGTTTACCAGATATTTCTTGCCTGTGACTTTCTGGT  300

seq1  AACCCCACTTTGCTATGACCCATGCCACTAAACTTTCCAGAAACAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACTTTGCTATGACCCATGCCACTAAACTTTCCAGAAACAAACAA  350

seq1  ACAAACAAACAAGCCAACACCCATAGTCTCTCGTGTCTATTCTAAGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAGCCAACACCCATAGTCTCTCGTGTCTATTCTAAGCAGA  400

seq1  TTCTGGCTTCCCAGAGCATGAATGATCAAGTCTTTGTATCAAAGGATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTTCCCAGAGCATGAATGATCAAGTCTTTGTATCAAAGGATGGG  450

seq1  TGTTATGATCTGCCACAGGTGATGGATGGGTCAGTAGGCCGCAGCATCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGATCTGCCACAGGTGATGGATGGGTCAGTAGGCCGCAGCATCCG  500

seq1  TGTCACATGCCTGTCCTGTCAGAAATCCACAGATAAGCAGAATTCGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATGCCTGTCCTGTCAGAAATCCACAGATAAGCAGAATTCGTGGC  550

seq1  ACTGGGAACAGTTAGAAGTCCTAGAGCCCAAACGTCTGAGAAGCAGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAACAGTTAGAAGTCCTAGAGCCCAAACGTCTGAGAAGCAGAGCC  600

seq1  TTTGATGCTAAAGCAAGAATAAGATGGACATTTCAGCATCAGAAGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCTAAAGCAAGAATAAGATGGACATTTCAGCATCAGAAGAGCAC  650

seq1  ATGAACATTCATTCACCTCCCTACGCCACCCAGGTTTCAGCAGACCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTCATTCACCTCCCTACGCCACCCAGGTTTCAGCAGACCAGAC  700

seq1  ACCTCTCCTCCATACTGGTGAGGGCCATCTCTTCACCTGTTAGCAACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTCCATACTGGTGAGGGCCATCTCTTCACCTGTTAGCAACCAC  750

seq1  TGATGCAGATCCCTTCTGAAACATCCTGGAGGATACAGGCAGAAGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGATCCCTTCTGAAACATCCTGGAGGATACAGGCAGAAGTGACA  800

seq1  CTTTACCCAGCCATCAGGGCATCTCTCAGTCCAGCCAAATTGACAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCAGCCATCAGGGCATCTCTCAGTCCAGCCAAATTGACAGAGAA  850

seq1  TATCAGCTGTCACATCAGCCTGACATTAATGATGCTAATCCATCTCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTGTCACATCAGCCTGACATTAATGATGCTAATCCATCTCTCTG  900

seq1  TTGA-TATTAATCATGACTATTATTATGTGACCATGACAGACTTAATTCC  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATTAATCATGACTATTATTATGTGACCATGACAGACTTAATTCC  950

seq1  -TTCCTAAGGGAAAGAAACCTCCAAACCCTGTAATTTATTGAACACATCT  998
       |||||||||||||||| |  ||||||||||| ||||||  | |||||||
seq2  TTTCCTAAGGGAAAGAACCTCCCAAACCCTGT-ATTTATGAACCACATCT  999

seq1  ACCGTCCTGGTCTTCTTGTTAGGCAGAGGCATGT--CAGCAGGAAG-AAT  1045
      |||||||||||| |||||||| ||||| ||||||   ||||| ||| |||
seq2  ACCGTCCTGGTC-TCTTGTTA-GCAGA-GCATGTTCTAGCAGAAAGAAAT  1046

seq1  AGGGGAGACTGGTGTTTTAGTTGCCAAC-ATCTCATTCAC-TGACTCA  1091
      |||||||||||   |||||||||||||| |||||  |||| |||||||
seq2  AGGGGAGACTGCGTTTTTAGTTGCCAACAATCTCCATCACTTGACTCA  1094