BAC Information

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BAC

Clone NameB6Ng01-172K07
Chromosome9 (Build37)
Map Location 70,611,985 - 70,744,941
singlet/doubletdoublet
Overlap geneAdam10, Lipc, LOC100041622
Upstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Cycs-ps1
Downstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172K07.bB6Ng01-172K07.g
ACCGA001205GA001206
length996302
definitionB6Ng01-172K07.b B6Ng01-172K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,743,945 - 70,744,941)(70,611,985 - 70,612,285)
sequence
gaattcagtacgaaaaaaggggctcccaaaacaggcaaaaaaaaaaagtc
agacagtctctgatcacactgttagaaatcccacaagaacaccaagctac
ataaccatagcataaacgcagagctgagatcggatccaggtaggctcccg
ggttgtcagttaagtttctgtgagcacctgtgaatcctggttagttgctt
ctgtgggctattttgttgtggtgttcttaacccctctggctcctacaatc
ttgaagttcgttttctatttttctgtctattccaaaggctctgtaaaatt
ccatcattgccttcccctaaatattgtgttttctttctttctcccttccc
cttctttctcctccttttcctcttcttcctcctcctccttctgtagattc
atggttttgtgtgtgtgtgtgtgtgtgttgatgtctgtgtatatgcacac
ataagtgcaggtaaccaacaaggccagaagagggagtcagatcacctgga
actataattacagatggctgtgggctgccccgatatgggttcttaaagcc
aagctccaatcttctggaagagcaataagcacccttaactgctgggccct
ttcttcagccctcactgtaatttctgaaatgcatatgacttctttcttct
cttctattatacaaaactcaaccacgctgattactatagctactaggcaa
tttttctatactttcatctagacaattattccaattgttgtgtgcatact
tatcctaagaacaattccagattataaagcacttttcaaaggttcattgt
cttgtctgccctcacaacttcagcttctagaatgcaatttgttctccagc
attcctacctgtatataacagcggtgacaatcgtcatcccttcccaataa
actttgacatgacatttcatcaaattctttcaaatattttttcatctgtt
gtgttcttattcaaatatccacttacctgggggaggggggaatcag
ctggtctgaatttttttcctccatcatttgttttagtattgctggggatt
gatttaaatctactcttctaattttttagcttcaggacttgagaaagttg
aagaaacggctatcactgggaagagaggccccttggtatcgcaaacttta
tatgcctcaatacaggggaatgccagggccaagaagtgggagtgggtggg
tagggtagcagggcggagggagggtatagggaactttcgggatagctttt
gaaatgtatataaagaaaatatctaactacaactaaaaaagaaatttggg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70743945_70744941
seq2: B6Ng01-172K07.b_44_1039 (reverse)

seq1  CTGATTCCCCCCTCCCCCAGGGTAAGTGGATATTTGAATAAGAACACAAC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGATTCCCCCCTCCCCCA-GGTAAGTGGATATTTGAATAAGAACACAAC  49

seq1  AGATG-AAAAATATTTGAAAGAATTTGATGAAATGTCATGTCAAAGTTTA  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAAATATTTGAAAGAATTTGATGAAATGTCATGTCAAAGTTTA  99

seq1  TTGGGAAGGGATGACGATTGTCACCGCTGTTATATACAGGTAGGAATGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGGATGACGATTGTCACCGCTGTTATATACAGGTAGGAATGCT  149

seq1  GGAGAACAAATTGCATTCTAGAAGCTGAAGTTGTGAAGGGCAGACAAGAC  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGAACAAATTGCATTCTAGAAGCTGAAGTTGTG-AGGGCAGACAAGAC  198

seq1  AATGAACCTTTGAAAAGTGCTTTATAATCTGGAATTGTTCTTAGGATAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCTTTGAAAAGTGCTTTATAATCTGGAATTGTTCTTAGGATAAG  248

seq1  TATGCACACAACAATTGGAATAATTGTCTAGATGAAAGTATAGAAAAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACACAACAATTGGAATAATTGTCTAGATGAAAGTATAGAAAAATT  298

seq1  GCCTAGTAGCTATAGTAATCAGCGTGGTTGAGTTTTGTATAATAGAAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTAGCTATAGTAATCAGCGTGGTTGAGTTTTGTATAATAGAAGAG  348

seq1  AAGAAAGAAGTCATATGCATTTCAGAAATTACAGTGAGGGCTGAAGAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGTCATATGCATTTCAGAAATTACAGTGAGGGCTGAAGAAAG  398

seq1  GGCCCAGCAGTTAAGGGTGCTTATTGCTCTTCCAGAAGATTGGAGCTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCAGTTAAGGGTGCTTATTGCTCTTCCAGAAGATTGGAGCTTGG  448

seq1  CTTTAAGAACCCATATCGGGGCAGCCCACAGCCATCTGTAATTATAGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAACCCATATCGGGGCAGCCCACAGCCATCTGTAATTATAGTTC  498

seq1  CAGGTGATCTGACTCCCTCTTCTGGCCTTGTTGGTTACCTGCACTTATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATCTGACTCCCTCTTCTGGCCTTGTTGGTTACCTGCACTTATGT  548

seq1  GTGCATATACACAGACATCAACACACACACACACACACACAAAACCATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATACACAGACATCAACACACACACACACACACACAAAACCATGA  598

seq1  ATCTACAGAAGGAGGAGGAGGAAGAAGAGGAAAAGGAGGAGAAAGAAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGAAGGAGGAGGAGGAAGAAGAGGAAAAGGAGGAGAAAGAAGGG  648

seq1  GAAGGGAGAAAGAAAGAAAACACAATATTTAGGGGAAGGCAATGATGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGAAAGAAAGAAAACACAATATTTAGGGGAAGGCAATGATGGAA  698

seq1  TTTTACAGAGCCTTTGGAATAGACAGAAAAATAGAAAACGAACTTCAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAGCCTTTGGAATAGACAGAAAAATAGAAAACGAACTTCAAGA  748

seq1  TTGTAGGAGCCAGAGGGGTTAAGAACACCACAACAAAATAGCCCACAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGAGCCAGAGGGGTTAAGAACACCACAACAAAATAGCCCACAGAA  798

seq1  GCAACTAACCAGGATTCACAGGTGCTCACAGAAACTTAACTGACAACCCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAACCAGGATTCACAGGTGCTCACAGAAACTTAACTGACAACCCG  848

seq1  GGAGCCTACCTGGATCCGATCTCAGCTCTGCGTTTATGCTATGGTTATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTACCTGGATCCGATCTCAGCTCTGCGTTTATGCTATGGTTATGT  898

seq1  AGCTTGGTGTTCTTGTGGGATTTCTAACAGTGTGATCAGAGACTGTCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTGTTCTTGTGGGATTTCTAACAGTGTGATCAGAGACTGTCTGA  948

seq1  CTTTTTTTTTTTGCCTGTTTTGGGAGCCCCTTTTTTCGTACTGAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTGCCTGTTTTGGGAGCCCCTTTTTTCGTACTGAATTC  996

seq1: chr9_70611985_70612285
seq2: B6Ng01-172K07.g_70_370

seq1  CTGGTCTGAATTTTTTTCCTCCATCATTTGTTTTAGTATTGCTGGGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGAATTTTTTTCCTCCATCATTTGTTTTAGTATTGCTGGGGATT  50

seq1  GATTTAAATCTACTCTTCTAATTTTTTAGCTTCAGGACTTGAGAAAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAATCTACTCTTCTAATTTTTTAGCTTCAGGACTTGAGAAAGTTG  100

seq1  AAGAAACGGCTATCACTGGGAAGAGAGGCCCCTTGGTATCGCAAACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGGCTATCACTGGGAAGAGAGGCCCCTTGGTATCGCAAACTTTA  150

seq1  TATGCCTCAATACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCAATACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGG  200

seq1  TAGGGTAGCAGGGCGGAGGGAGGGTATAGGGAACTTTCGGGATAGCATTT  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGGGTAGCAGGGCGGAGGGAGGGTATAGGGAACTTTCGGGATAGCTTTT  250

seq1  GAAATGTATATAAAGAAAATATCTAACAACAACAAAAAAAGAAATCTGGG  300
      ||||||||||||||||||||||||||| ||||| ||||||||||| ||||
seq2  GAAATGTATATAAAGAAAATATCTAACTACAACTAAAAAAGAAATTTGGG  300

seq1  G  301
      |
seq2  G  301