BAC Information

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BAC

Clone NameB6Ng01-172L06
Chromosome9 (Build37)
Map Location 102,480,197 - 102,630,052
singlet/doubletdoublet
Overlap geneCep63, Anapc13, Amotl2
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843
Downstream geneEG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172L06.bB6Ng01-172L06.g
ACCGA001250GA001251
length9111,102
definitionB6Ng01-172L06.b B6Ng01-172L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,629,137 - 102,630,052)(102,480,197 - 102,481,292)
sequence
gaattcaaaccatgcatcacactgaaaaggatgctggtccaaagacttgt
gtctaagattccagcaattgccgagcactttgcacattagaggaacctct
ccatttagcctggccaaggcaagaaagaacctggatgttcgccctttggg
agtcttgggctagtcgaccaagaatggctgcttatttctctagagagttc
gtagggaacagggtttggaacaaaactatattggtgagatttttctgcta
cagtggatggctctacattatccaaaacagtaactaccaaggttacactc
agctaccgaactctcaaaatgtggctggaaagacagaagaaatgttaact
ttctttgggctatgtgtggctaggacacggccctagtatgcagaggcctc
ccttcaccaactcgttgaacagcattaaggggcactaaggggcaatctag
gctatctcctttgcccttctgaaggctacaatcggcctagcttgcctcac
tctttggtgtggagggaaaagacggggctgttccatgatgctttacacat
gacttggtcatactctgctggcttgcctttggtgagtggagtggagggaa
gaagccaggttcagacccgtaaacagcatcctctctcacccactagcact
acagcctgtgtctgaatgtccaggcctcactccagacctagcagtactag
gaggtagatgcttctgtagcctgtgccaggccaaggcaacacctgtccaa
aagcaggcaggaccagttgtcagcctcagagtcagctcctgaaggcccat
atcatacaattcaggcagagatgggggctgctgttggggaatgccagtta
tgggtaggattctgtaccctccgaaaaagtgtcaacctcatcctttagaa
tggcgattatt
gaattcttatacattgtcagaaaatgaactaagacaatatgagacaaatt
ccttcacattttctccgaaatatgtaattacaatgaaaaagataaaagcc
acacattaggaaagatagcatttacatgaaacactcaatggaatcttgaa
aagtcttttcaaatgcaaatcctaagctttcttgagtgaccttaactttt
atattaggatttattcttgagacgatacacaatccctgtctagagatttt
tagtgacagcatttttaagttcttcacagcccacactgataagacacaaa
atagttaattttctttgcagtatttattcagaaatcttagcagtagactg
tacacaaaagtgcaataattgagattcttcctcttttctttaccaagttt
atttctgaactttaaaataatattatgcattgattttttaaaataattat
ttattattatatgtaagtacactgtagtcgtcttcagacacaccagaaaa
gggcgtcagatctcattatggatggttgtgagccaccatgtggttgctgg
gatttgaactcaggaccttcagaagagcagtcagtgctcttacctgctta
gccatctcgccagccccatgcattgattttttaatcccatcaaatatttt
tagacctgatatttttttaaatgagtgcagtgataaagcccattaccttg
taagctaatcttaaatattagtgacaaacacaaatttgaagaacttgttt
ctttcaaggaaacagacaccctagtttgaggtggctaaggaccccagcag
cagactcctgtctgatggagttgttatttgatgcattgttcaataatatt
catagccaagtttgtagagattgcataaagatgcagaaattttgtgtaaa
gggcagattggggaccactgcctacacccatccaagctttgttttgcctc
tccatgctagcccttctcttgtcttctctggctcagtgcacagaaaaaat
gcatttgggcactgcaaagttttcttggggttcaacagagcagcaccagc
catggctatgtgtcctttttccacagcagaaagtagaaacctctcgtgtc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_102629137_102630052
seq2: B6Ng01-172L06.b_44_953 (reverse)

seq1  ATAATCGCCATTTCTAAAGGGCTGAGGTTGACACTTTTTTCTGGAGGGTA  50
      |||||||||| ||||||| || |||||||||||||||||   ||||||||
seq2  ATAATCGCCA-TTCTAAA-GGATGAGGTTGACACTTTTT--CGGAGGGTA  46

seq1  CAGAATTCCTCCCCATAACTGGCTTTCCCCAACAGCAGCCCCCATCTCTG  100
      ||||| |||| |||||||||||| ||||||||||||||||||||||||||
seq2  CAGAA-TCCTACCCATAACTGGCATTCCCCAACAGCAGCCCCCATCTCTG  95

seq1  CCTGAATTGTCTGATATGGGCCTTCAGGAGCTGACTCTGAGGCCTGACAA  150
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  CCTGAATTGTATGATATGGGCCTTCAGGAGCTGACTCTGAGG-CTGACAA  144

seq1  CTGGTCCTGCCTGCTTTTGGACAGGTGTTGCCTTGGCCTGGCACAGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTGCCTGCTTTTGGACAGGTGTTGCCTTGGCCTGGCACAGGCTA  194

seq1  CAGAAGCATCTACCTCCTAGTACTGCTAGGTCTGGAGTGAGGCCTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATCTACCTCCTAGTACTGCTAGGTCTGGAGTGAGGCCTGGACA  244

seq1  TTCAGACACAGGCTGTAGTGCTAGTGGGTGAGAGAGGATGCTGTTTACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACAGGCTGTAGTGCTAGTGGGTGAGAGAGGATGCTGTTTACGG  294

seq1  GTCTGAACCTGGCTTCTTCCCTCCACTCCACTCACCAAAGGCAAGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAACCTGGCTTCTTCCCTCCACTCCACTCACCAAAGGCAAGCCAGC  344

seq1  AGAGTATGACCAAGTCATGTGTAAAGCATCATGGAACAGCCCCGTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGACCAAGTCATGTGTAAAGCATCATGGAACAGCCCCGTCTTTT  394

seq1  CCCTCCACACCAAAGAGTGAGGCAAGCTAGGCCGATTGTAGCCTTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACACCAAAGAGTGAGGCAAGCTAGGCCGATTGTAGCCTTCAGAA  444

seq1  GGGCAAAGGAGATAGCCTAGATTGCCCCTTAGTGCCCCTTAATGCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGGAGATAGCCTAGATTGCCCCTTAGTGCCCCTTAATGCTGTTC  494

seq1  AACGAGTTGGTGAAGGGAGGCCTCTGCATACTAGGGCCGTGTCCTAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTTGGTGAAGGGAGGCCTCTGCATACTAGGGCCGTGTCCTAGCCA  544

seq1  CACATAGCCCAAAGAAAGTTAACATTTCTTCTGTCTTTCCAGCCACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCCCAAAGAAAGTTAACATTTCTTCTGTCTTTCCAGCCACATTT  594

seq1  TGAGAGTTCGGTAGCTGAGTGTAACCTTGGTAGTTACTGTTTTGGATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTCGGTAGCTGAGTGTAACCTTGGTAGTTACTGTTTTGGATAAT  644

seq1  GTAGAGCCATCCACTGTAGCAGAAAAATCTCACCAATATAGTTTTGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCCATCCACTGTAGCAGAAAAATCTCACCAATATAGTTTTGTTCC  694

seq1  AAACCCTGTTCCCTACGAACTCTCTAGAGAAATAAGCAGCCATTCTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTTCCCTACGAACTCTCTAGAGAAATAAGCAGCCATTCTTGGT  744

seq1  CGACTAGCCCAAGACTCCCAAAGGGCGAACATCCAGGTTCTTTCTTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAGCCCAAGACTCCCAAAGGGCGAACATCCAGGTTCTTTCTTGCCT  794

seq1  TGGCCAGGCTAAATGGAGAGGTTCCTCTAATGTGCAAAGTGCTCGGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGCTAAATGGAGAGGTTCCTCTAATGTGCAAAGTGCTCGGCAAT  844

seq1  TGCTGGAATCTTAGACACAAGTCTTTGGACCAGCATCCTTTTCAGTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAATCTTAGACACAAGTCTTTGGACCAGCATCCTTTTCAGTGTGA  894

seq1  TGCATGGTTTGAATTC  916
      ||||||||||||||||
seq2  TGCATGGTTTGAATTC  910

seq1: chr9_102480197_102481292
seq2: B6Ng01-172L06.g_68_1169

seq1  GAATTCTTATACATTGTCAGAAAATGAACTAAGACAATATGAGACAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATACATTGTCAGAAAATGAACTAAGACAATATGAGACAAATT  50

seq1  CCTTCACATTTTCTCCGAAATATGTAATTACAATGAAAAAGATAAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACATTTTCTCCGAAATATGTAATTACAATGAAAAAGATAAAAGCC  100

seq1  ACACATTAGGAAAGATAGCATTTACATGAAACACTCAATGGAATCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTAGGAAAGATAGCATTTACATGAAACACTCAATGGAATCTTGAA  150

seq1  AAGTCTTTTCAAATGCAAATCCTAAGCTTTCTTGAGTGACCTTAACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTCAAATGCAAATCCTAAGCTTTCTTGAGTGACCTTAACTTTT  200

seq1  ATATTAGGATTTATTCTTGAGACGATACACAATCCCTGTCTAGAGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGGATTTATTCTTGAGACGATACACAATCCCTGTCTAGAGATTTT  250

seq1  TAGTGACAGCATTTTTAAGTTCTTCACAGCCCACACTGATAAGACACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACAGCATTTTTAAGTTCTTCACAGCCCACACTGATAAGACACAAA  300

seq1  ATAGTTAATTTTCTTTGCAGTATTTATTCAGAAATCTTAGCAGTAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAATTTTCTTTGCAGTATTTATTCAGAAATCTTAGCAGTAGACTG  350

seq1  TACACAAAAGTGCAATAATTGAGATTCTTCCTCTTTTCTTTACCAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAAGTGCAATAATTGAGATTCTTCCTCTTTTCTTTACCAAGTTT  400

seq1  ATTTCTGAACTTTAAAATAATATTATGCATTGATTTTTTAAAATAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAACTTTAAAATAATATTATGCATTGATTTTTTAAAATAATTAT  450

seq1  TTATTATTATATGTAAGTACACTGTAGTCGTCTTCAGACACACCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATATGTAAGTACACTGTAGTCGTCTTCAGACACACCAGAAAA  500

seq1  GGGCGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGG  550

seq1  GATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTACCTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTACCTGCTTA  600

seq1  GCCATCTCGCCAGCCCCATGCATTGATTTTTTAATCCCATCAAATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCGCCAGCCCCATGCATTGATTTTTTAATCCCATCAAATATTTT  650

seq1  TAGACCTGATATTTTTTTAAATGAGTGCAGTGATAAAGCCCATTACCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTGATATTTTTTTAAATGAGTGCAGTGATAAAGCCCATTACCTTG  700

seq1  TAAGCTAATCTTAAATATTAGTGACAAACACAAATTTGAAGAACTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAATCTTAAATATTAGTGACAAACACAAATTTGAAGAACTTGTTT  750

seq1  CTTTCAAGGAAACAGACACCCTAGTTTGAGGTGGCTAAGGACCCCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGGAAACAGACACCCTAGTTTGAGGTGGCTAAGGACCCCAGCAG  800

seq1  CAGACTCCTGTCTGATGGAGTTGTTATTTGATGCATTGTTCAATAATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCTGTCTGATGGAGTTGTTATTTGATGCATTGTTCAATAATATT  850

seq1  CATAGCCAAGTTTGTAGAGATTGCATAAAGATGCAGAAATTTTTGTGTAA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATAGCCAAGTTTGTAGAGATTGCATAAAGATGCAGAAA-TTTTGTGTAA  899

seq1  A-GGCAGATT-GGGACCACTGCCTACACCCATCCAAGCTTTGTTTTGCCT  948
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGATTGGGGACCACTGCCTACACCCATCCAAGCTTTGTTTTGCCT  949

seq1  CTCCATGCTAGCCCTTCTCTTGTCTCCTCTGCCTCAGTGCACAG-AAAAA  997
      ||||||||||||||||||||||||| ||||| |||||||||||| |||||
seq2  CTCCATGCTAGCCCTTCTCTTGTCTTCTCTGGCTCAGTGCACAGAAAAAA  999

seq1  TGCATTTGGGCACTGCAAAGTTTTCTTGGGGTTC-ACAGAGCAAGCACCA  1046
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGCATTTGGGCACTGCAAAGTTTTCTTGGGGTTCAACAGAGC-AGCACCA  1048

seq1  GCCAT-GCTATGTGCCCTTTTTCCACAGCAGAAAGTAGAA--CTCTC-TG  1092
      ||||| |||||||| |||||||||||||||||||||||||  ||||| ||
seq2  GCCATGGCTATGTGTCCTTTTTCCACAGCAGAAAGTAGAAACCTCTCGTG  1098

seq1  TCAT  1096
      ||||
seq2  TCAT  1102