BAC Information

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BAC

Clone NameB6Ng01-173B04
Chromosome9 (Build37)
Map Location 107,059,636 - 107,242,512
singlet/doubletdoublet
Overlap geneDock3, Mapkapk3, Cish, Hemk1
Upstream gene6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream gene6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173B04.bB6Ng01-173B04.g
ACCGA001521GA001522
length951690
definitionB6Ng01-173B04.b B6Ng01-173B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,241,558 - 107,242,512)(107,059,636 - 107,060,320)
sequence
gaattcagtttgatcttctattgaatttatgaccttgaacagcaaactgc
ttctcttcttttgtctcagtttcctgcctatataggaactctggtgtttt
ggaacaagggcggtttttggtaagtgactcctggagacttcagtccagag
atgttgagatggaattatctgtgtgatagcccacctattcctctcataat
agttttcatccacagcaaaattcatctcaggacagaagtaccgatttcct
atacccaagagctgtatccccaaccatttaaaactaccctcaccccatcc
cctaaacagactgtgtgtaacccaggatggcccgatacttattatgttgc
ccaggttagtcttgaaccaaggcaatcctccacctcctgggtgcttgggt
tttaatttttaattaattagtttcatgtgtgaggatgttttgtctgcaca
cgtatctgtacactacatatgtgtctggtgttcaaggaagccagaagagg
gcattggatcctctggtactggagttacagactgctgtgagcctccttgt
aggtgctcaaaattgaacctgggtcctttggaaaagcagccagtgctctt
aaccactgaggcatttctccagacccccttgtactgggacttataggtgt
gcaccagtacacccaactcccagcccctctccctttttactcaagtattt
tattttttacttttttgaagcaggatttcatgtagcccagtctggcctta
aaagatgagtttctggtttccctgcctccacctgctgaaaactaggattt
ataagtattacccaaccccatttgtgggcatcaaacccagagttgtgtga
ctgttaggtgagcacatcaattgagctaccccgtgaactattattttgaa
tatttatgttatttcttaaattataagtatgtatgtttggatgggtatgt
g
gaattccaggccagtgagagacagtgtctcaaaagaatgaatgaatgaat
gaatgaatgaataaataaataaataaataaataaataaataaataaataa
aataaaataaaacaaaacaaaacaaacaaaataaagggtggacagtagct
aagaaacaaacccaaggttggtgatcctctggattctatacaaatgcaca
cagttggggaaagtgtacttaacattttaaaggtattattcagctgcaaa
gtaatcactaagtactagtactggaagccaggaaaaggggtttcaaagtt
cacaaataataagcacaaataaaaacatgtaatatcacatattattgctt
tccactgatatttaagattcacatttatccaatttctaactttggcacaa
tttaatcaaaattctcaaaataaatgtagaaactattctcatataagcat
tcttgagagaaaagtaaaacctgtagtattgcaagtttagaaatacacag
agagtcgggcagtggtggcgcatgccttttatcccagcacttgggaggca
gaggcaggtggatttctgagtttgaggccagcctggtctacagagtgagt
tccaggacagccagggctacacagagaaacccctgtctggaaaaacaaaa
aaagaagaggaggaggtagaagaagaggaggaggaagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107241558_107242512
seq2: B6Ng01-173B04.b_45_995 (reverse)

seq1  CACATACCCATCCAAACATACATACTTATAATTTTAAGAAATAACATAAA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CACATACCCATCCAAACATACATACTTATAA-TTTAAGAAATAACAT-AA  48

seq1  ATATTCAAAAATAAATAGTTCACGGGGTAGCTCAATTGATGTGCTCACCT  100
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAA--TAATAGTTCACGGGGTAGCTCAATTGATGTGCTCACCT  96

seq1  AACAGTCACACAACTCTGGGTTTGATGCCCACAAATGGGGTTTGGTAATA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACAGTCACACAACTCTGGGTTTGATGCCCACAAATGGGGTTGGGTAATA  146

seq1  CTTATAAATCCTAGTTTTCAGCAGGTGGAGGCAGGGAAACCAGAAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAATCCTAGTTTTCAGCAGGTGGAGGCAGGGAAACCAGAAACTCA  196

seq1  TCTTTTAAGGCCAGACTGGGCTACATGAAATCCTGCTTCAAAAAAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAGGCCAGACTGGGCTACATGAAATCCTGCTTCAAAAAAGTAAA  246

seq1  AAATAAAATACTTGAGTAAAAAGGGAGAGGGGCTGGGAGTTGGGTGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATACTTGAGTAAAAAGGGAGAGGGGCTGGGAGTTGGGTGTACT  296

seq1  GGTGCACACCTATAAGTCCCAGTACAAGGGGGTCTGGAGAAATGCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACACCTATAAGTCCCAGTACAAGGGGGTCTGGAGAAATGCCTCAG  346

seq1  TGGTTAAGAGCACTGGCTGCTTTTCCAAAGGACCCAGGTTCAATTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAGCACTGGCTGCTTTTCCAAAGGACCCAGGTTCAATTTTGAG  396

seq1  CACCTACAAGGAGGCTAACAGCAGTCTGTAACTCCAGTACCAGAGGATCC  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACCTACAAGGAGGCTCACAGCAGTCTGTAACTCCAGTACCAGAGGATCC  446

seq1  AATGCCCTCTTCTGGCTTCCTTGAACACCAGACACATATGTAGTGTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTCTTCTGGCTTCCTTGAACACCAGACACATATGTAGTGTACAG  496

seq1  ATACGTGTGCAGACAAAACATCCTCACACATGAAACTAATTAATTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTGTGCAGACAAAACATCCTCACACATGAAACTAATTAATTAAAAA  546

seq1  TTAAAACCCAAGCACCCAGGAGGTGGAGGATTGCCTTGGTTCAAGACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCCAAGCACCCAGGAGGTGGAGGATTGCCTTGGTTCAAGACTAA  596

seq1  CCTGGGCAACATAATAAGTATCGGGCCATCCTGGGTTACACACAGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCAACATAATAAGTATCGGGCCATCCTGGGTTACACACAGTCTGT  646

seq1  TTAGGGGATGGGGTGAGGGTAGTTTTAAATGGTTGGGGATACAGCTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGATGGGGTGAGGGTAGTTTTAAATGGTTGGGGATACAGCTCTTG  696

seq1  GGTATAGGAAATCGGTACTTCTGTCCTGAGATGAATTTTGCTGTGGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGAAATCGGTACTTCTGTCCTGAGATGAATTTTGCTGTGGATGA  746

seq1  AAACTATTATGAGAGGAATAGGTGGGCTATCACACAGATAATTCCATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTATGAGAGGAATAGGTGGGCTATCACACAGATAATTCCATCTC  796

seq1  AACATCTCTGGACTGAAGTCTCCAGGAGTCACTTACCAAAAACCGCCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTGGACTGAAGTCTCCAGGAGTCACTTACCAAAAACCGCCCTT  846

seq1  GTTCCAAAACACCAGAGTTCCTATATAGGCAGGAAACTGAGACAAAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAAACACCAGAGTTCCTATATAGGCAGGAAACTGAGACAAAAGAA  896

seq1  GAGAAGCAGTTTGCTGTTCAAGGTCATAAATTCAATAGAAGATCAAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAGTTTGCTGTTCAAGGTCATAAATTCAATAGAAGATCAAACTG  946

seq1  AATTC  955
      |||||
seq2  AATTC  951

seq1: chr9_107059636_107060320
seq2: B6Ng01-173B04.g_69_758

seq1  GAATTCCAGGCCAGTGAGAGACAGTGTCTCAAAA----GAATGAATGAAT  46
      ||||||||||||||||||||||||||||||||||    ||||||||||||
seq2  GAATTCCAGGCCAGTGAGAGACAGTGTCTCAAAAGAATGAATGAATGAAT  50

seq1  GAATGAATGAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA  100

seq1  AATAAAATAAAACAAAACAAAACAAACAAAATAAAGGGTGGACAGTAGCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAACAAAACAAAACAAACAAAATAAAGGGTGGACAGTAGCT  150

seq1  AAGAAACAAACCCAAGGTTGGTGATCCTCTGGATTCTATACAAATGCACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAACCCAAGGTTGGTGATCCTCTGGATTCTATACAAATGCACA  200

seq1  CAGTTGGGGAAAGTGTACTTAACATTTTAAAGGTATTATTCAGCTGCAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGGAAAGTGTACTTAACATTTTAAAGGTATTATTCAGCTGCAAA  250

seq1  GTAATCACTAAGTACTAGTACTGGAAGCCAGGAAAAGGGGTTTCAAAGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACTAAGTACTAGTACTGGAAGCCAGGAAAAGGGGTTTCAAAGTT  300

seq1  CACAAATAATAAGCACAAATAAAAACATGTAATATCACATATTATTGCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAATAAGCACAAATAAAAACATGTAATATCACATATTATTGCTT  350

seq1  TCCACTGATATTTAAGATTCACATTTATCCAATTTCTAACTTTGGCACAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGATATTTAAGATTCACATTTATCCAATTTCTAACTTTGGCACAA  400

seq1  TTTAATCAAAATTCTCAAAATAAATGTAGAAACTATTCTCATATAAGCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAAAATTCTCAAAATAAATGTAGAAACTATTCTCATATAAGCAT  450

seq1  TCTTGAGAGAAAAGTAAAACCTGTAGTATTGCAAGTTTAGAAATACACAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGAGAAAAGTAAAACCTGTAGTATTGCAAGTTTAGAAATACACAG  500

seq1  AGAGTCGGGCAGTGGTGGCGCATGCCTTTTATCCCAGCACTTGGGAGGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGGGCAGTGGTGGCGCATGCCTTTTATCCCAGCACTTGGGAGGCA  550

seq1  GAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGT  600

seq1  TCCAGGACAGCCAGGGCTACACAGAGAAA-CCCTGTCTGGAAAAACAAAA  645
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTACACAGAGAAACCCCTGTCTGGAAAAACAAAA  650

seq1  AAAGAAGAGGAGGAGGAAGAAGAAGAGGAGGAGGAAGAGG  685
      |||||||||||||||| |||||||||||||||||||||||
seq2  AAAGAAGAGGAGGAGGTAGAAGAAGAGGAGGAGGAAGAGG  690