BAC Information

Click to search

BAC

Clone NameB6Ng01-173M14
Chromosome9 (Build37)
Map Location 4,461,912 - 4,463,075
singlet/doubletsinglet
Overlap geneGria4
Upstream geneCwf19l2, LOC384911, Gucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173M14.bB6Ng01-173M14.g
ACCGA002041GA002042
length1,1641,183
definitionB6Ng01-173M14.b B6Ng01-173M14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttgttgatcccgaatcaagtgttccataggcaatttctgttt
gtttggccaggtcttctgcactttctatgggggagaccattctctccact
gtcaggaatgcagccagattagcagtgtaggatgagataatgatgagagt
gaagaaccaccatacgcctccaacaatccgaccggacagggatctaagta
tggagaaaatcacacagttttcccctttcaaacccaaatattgtgctatt
ttctgttagtctatttaataatgatgtcctttacattataactaaaatgc
aagtgtcactgaagacatgacaaattgaatttattatttttattggcaga
aatgtgaaactttcctgtctggcagatatcaaagggaatgtagtccttag
tgcccagagactgagcccatctgagtgctcctggatgccatgtaggtcag
attgagtctcaagtgacctacctttgagctgagcagatgtcctaaaggta
ctttttatgttgaaataacaatgtctactaagaatgtgcacatgagttat
aactcacagaaggaaagttaaagtgatataaattttaaaaatgcaggaaa
gaatgctcataccgaattttacacattcttaccagcaaggcatgagctct
cttactatgtagtccaggctagcctgaatctatatagcaacgttttctta
tacttggtcagttttcatacctcagcctcctaagtgctggtactattggt
aggcaaatcactattcatgccaaatagttttaaattttgaaattgcattg
ttttctttatgtattgtcatgtgctcatctacactatgctatacataaga
ggccagaggaaacttgagggagttatttatcttcatctactgggtgattt
ccagctattgaactcagatccttgggtttggtggtaagcacctttaccct
ctgagaaatctccgtagtcctaaaaccacgttttgttttgtgtaaagagt
cacttagaattttcttatgccccaaacttctttgctaatttaaatcagaa
tagtttgccaatttgaaggttgcatctgctacattttaactttaatattg
actattctcttttcaaaaaactggtctgcctgaattcttctacttgtctc
tgagtgcgtgttat
gaattcattggcaaagggggaaagttttctaagtagaactccagtggctc
acactttagatcaagaattgataaatgggacctcatgaaactggaatgct
cctgtaaggcaaagtacatagtcaataagacaaaccggcatcctacagat
taggaaaaatcttcactaaccccacatctgatagagagctaatatccaag
atatataaagaactgaataagctaataacatacaaaccaaacaacccaat
caaaaacaaatgaggtatagaactaaacagagatttcacaactgaggaat
atctaatggttgagacgcaccttaagaaatgttcaaagtccttagtgatg
agagaaatgaaaatcaaaccaaccctgagatttcaccttacaccaatcag
aatggctaagatcaaaatctcatgtgacaacacatgttggcaaggatgtg
gagaaagaggaatgctctccattgttggtgccctgacactattactgagg
ctatggaatgctcataaaaagggacctttgatgactgccttctgaaagac
ccaacaagcagctgaaagaatcagatgcatacatttgcacccaaccaatg
gacagaagctgttgacccctttgtgattgaattagagaaggctgaagaag
ctgagtagaagggcgaccctgtaggagaaatagccatctctattaacctg
gacccctgagatctctcaaacactggacgaccaatcaggcagcatacagt
agctgatatgaggaccccaacacacatacagtagagtactgccaggtctg
ggttcagtcagagaagatgcacctaaccctcaagagactggagaccaaag
ggagtttagaggtctgattagtgggtgctgggtggtagggacatcctcat
ggagacaagaccatggggaggagttataggatgtggaacactcagagggt
gactggggaggataaaatgtggagtgtaataataaatagtaaaaaaaaac
aaaaagaaatggaaaagagaaaaagtagtaatcacttatgagcagataag
aaaaacactggcatgcactagtatcaaaacatgactttctgtgtcaaagg
agctcaatgaaaggcttgcatttaggcacgttcagcttaacaaatcgatg
tccacgaaaagcaggaagaaagctgtccaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4461912_4463075
seq2: B6Ng01-173M14.b_45_1208

seq1  GAATTCTTTTGTTGATCCCGAATCAAGTGTTCCATAGGCAATTTCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTGATCCCGAATCAAGTGTTCCATAGGCAATTTCTGTTT  50

seq1  GTTTGGCCAGGTCTTCTGCACTTTCTATGGGGGAGACCATTCTCTCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCAGGTCTTCTGCACTTTCTATGGGGGAGACCATTCTCTCCACT  100

seq1  GTCAGGAATGCAGCCAGATTAGCAGTGTAGGATGAGATAATGATGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAATGCAGCCAGATTAGCAGTGTAGGATGAGATAATGATGAGAGT  150

seq1  GAAGAACCACCATACGCCTCCAACAATCCGACCGGACAGGGATCTAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCACCATACGCCTCCAACAATCCGACCGGACAGGGATCTAAGTA  200

seq1  TGGAGAAAATCACACAGTTTTCCCCTTTCAAACCCAAATATTGTGCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAATCACACAGTTTTCCCCTTTCAAACCCAAATATTGTGCTATT  250

seq1  TTCTGTTAGTCTATTTAATAATGATGTCCTTTACATTATAACTAAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAGTCTATTTAATAATGATGTCCTTTACATTATAACTAAAATGC  300

seq1  AAGTGTCACTGAAGACATGACAAATTGAATTTATTATTTTTATTGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCACTGAAGACATGACAAATTGAATTTATTATTTTTATTGGCAGA  350

seq1  AATGTGAAACTTTCCTGTCTGGCAGATATCAAAGGGAATGTAGTCCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAACTTTCCTGTCTGGCAGATATCAAAGGGAATGTAGTCCTTAG  400

seq1  TGCCCAGAGACTGAGCCCATCTGAGTGCTCCTGGATGCCATGTAGGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAGACTGAGCCCATCTGAGTGCTCCTGGATGCCATGTAGGTCAG  450

seq1  ATTGAGTCTCAAGTGACCTACCTTTGAGCTGAGCAGATGTCCTAAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCTCAAGTGACCTACCTTTGAGCTGAGCAGATGTCCTAAAGGTA  500

seq1  CTTTTTATGTTGAAATAACAATGTCTACTAAGAATGTGCACATGAGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGTTGAAATAACAATGTCTACTAAGAATGTGCACATGAGTTAT  550

seq1  AACTCACAGAAGGAAAGTTAAAGTGATATAAATTTTAAAAATGCAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGAAGGAAAGTTAAAGTGATATAAATTTTAAAAATGCAGGAAA  600

seq1  GAATGCTCATACCGAATTTTACACATTCTTACCAGCAAGGCATGAGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCATACCGAATTTTACACATTCTTACCAGCAAGGCATGAGCTCT  650

seq1  CTTACTATGTAGTCCAGGCTAGCCTGAATCTATATAGCAACGTTTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATGTAGTCCAGGCTAGCCTGAATCTATATAGCAACGTTTTCTTA  700

seq1  TACTTGGTCAGTTTTCATACCTCAGCCTCCTAAGTGCTGGTACTATTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTCAGTTTTCATACCTCAGCCTCCTAAGTGCTGGTACTATTGGT  750

seq1  AGGCAAATCACTATTCATGCCAAATAGTTTTAAATTTTGAAATTGCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATCACTATTCATGCCAAATAGTTTTAAATTTTGAAATTGCATTG  800

seq1  TTTTCTTTATGTATTGTCATGTGCTCATCTACACTATGCTATACATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATGTATTGTCATGTGCTCATCTACACTATGCTATACATAAGA  850

seq1  GGCCAGAGGAAACTTGAGGGAGTTATTTATCTTCATCTACTGGGTGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGAAACTTGAGGGAGTTATTTATCTTCATCTACTGGGTGATTT  900

seq1  CCAGCTATTGAACTCAGATCCTTGGGTTTGGTGGTAAGCACCTTTACCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATTGAACTCAGATCCTTGGGTTTGGTGGTAAGCACCTTTACCCT  950

seq1  CTGAGAAATCTCCGTAGTCCTAAA--CACGTTTTGTTTTGTGTAAAGAGT  998
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  CTGAGAAATCTCCGTAGTCCTAAAACCACGTTTTGTTTTGTGTAAAGAGT  1000

seq1  CACTTAGAATTTTC-TATGCCCCAAACTTCTTTGCTAATTTAAATCAG-A  1046
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CACTTAGAATTTTCTTATGCCCCAAACTTCTTTGCTAATTTAAATCAGAA  1050

seq1  TAGTTTG-CAATTTGAAGTTTGGCATCTGCTACATTTTAAC-TTAATATT  1094
      ||||||| |||||||||| || ||||||||||||||||||| ||||||||
seq2  TAGTTTGCCAATTTGAAGGTT-GCATCTGCTACATTTTAACTTTAATATT  1099

seq1  GACTTAATCTTCTTTTCAAAAAACTTGGTCTGCCCTGATTCTTCCTACTT  1144
      ||||  ||  |||||||||||||| |||||||||   |||||| ||||||
seq2  GACT--ATTCTCTTTTCAAAAAAC-TGGTCTGCCTGAATTCTT-CTACTT  1145

seq1  GTCTCTGAGTGCTATGTTAT  1164
      ||||||||||||  ||||||
seq2  GTCTCTGAGTGC-GTGTTAT  1164