BAC Information

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BAC

Clone NameB6Ng01-173N16
Chromosome9 (Build37)
Map Location 109,856,062 - 110,046,819
singlet/doubletdoublet
Overlap geneMtap4, LOC100049540, Dhx30, Smarcc1
Upstream geneCol7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782
Downstream geneRn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173N16.bB6Ng01-173N16.g
ACCGA002091GA002092
length346691
definitionB6Ng01-173N16.b B6Ng01-173N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,046,474 - 110,046,819)(109,856,062 - 109,856,602)
sequence
gaattcttggtccccagctagtgaaatgactgctggagagggtatgccat
tgggaatctatgggttttaaggttttaaaagactacaccaggcccagcga
ggctctgcaccagctgcctgacagtcaggatgtaaagctctcagctagac
tgctctagcaccctgtctgtccacttcccatgataagcatgcaagccccc
attcaaatgttttcatagagttgccttagtcatggtgtctcttcacagca
atataatggtagctaaaacacagtaacagaacgaaactagatgatcttac
ttacaaagattataaaagaaaaaaagggggggggagggagaggtga
gaattccaaatgctcacaatctgcagttggcaaaagcactctgttagagc
tcaaggcagatcatagtcagctgctgctaacagtctggagtagccctgta
tgcccatacctgggattaaaataaaagcacattcttataattatatttct
gtgtttttaaagaacccaaaattctcactttagaactcctctttccttcc
ttccttctttctctttcctttttctctttctctttctctttctctttctc
tttctctttctctttctctttcgctttcgctttcgctttcgctttcgctt
tcgctttcgctttttcttttgcttttgcttttgctttttcttttttcttt
tctcttctttctgttttgagacaaaataggcctggctgtcctggaactag
tgtagactaggctggcctggaactcacagtgcctgccctctgcctctaga
gtgctaggaataaaggagtgtggcaacacgacccagttgaaagaactctg
taagatactctgacaatgaaagtacaaaagataacatgatagatgttaca
gactcagaactttgacaataagaaagtatcagcattttgacaactcagag
aaaagacactcacttcgttataaatcacataatgagaagaggcgaccgat
gttttctttttggtgtgtattggtgggttatatggaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110046474_110046819
seq2: B6Ng01-173N16.b_30_375 (reverse)

seq1  TCACCTCTCCCTCCCCCCCCCTTTTTTTCTTTTATAATCTTTGTAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTCCCTCCCCCCCCCTTTTTTTCTTTTATAATCTTTGTAAGTAA  50

seq1  GATCATCTAGTTTCGTTCTGTTACTGTGTTTTAGCTACCATTATATTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCTAGTTTCGTTCTGTTACTGTGTTTTAGCTACCATTATATTGCT  100

seq1  GTGAAGAGACACCATGACTAAGGCAACTCTATGAAAACATTTGAATGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGACACCATGACTAAGGCAACTCTATGAAAACATTTGAATGGGG  150

seq1  GCTTGCATGCTTATCATGGGAAGTGGACAGACAGGGTGCTAGAGCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATGCTTATCATGGGAAGTGGACAGACAGGGTGCTAGAGCAGTCT  200

seq1  AGCTGAGAGCTTTACATCCTGACTGTCAGGCAGCTGGTGCAGAGCCTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAGCTTTACATCCTGACTGTCAGGCAGCTGGTGCAGAGCCTCGC  250

seq1  TGGGCCTGGTGTAGTCTTTTAAAACCTTAAAACCCATAGATTCCCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGGTGTAGTCTTTTAAAACCTTAAAACCCATAGATTCCCAATGG  300

seq1  CATACCCTCTCCAGCAGTCATTTCACTAGCTGGGGACCAAGAATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTCTCCAGCAGTCATTTCACTAGCTGGGGACCAAGAATTC  346

seq1: chr9_109856062_109856602
seq2: B6Ng01-173N16.g_217_763

seq1  ATTTCTGTGTTTTTAAAGAACCCAAAATTCTCACTTTAGAACTCCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGTTTTTAAAGAACCCAAAATTCTCACTTTAGAACTCCTCTTT  50

seq1  CCTTCCTTCCTTCTTTCTCTTTCCTT------TTTCTCTTTCTCTTTCTC  94
      ||||||||||||||||||||||||||      ||||||||||||||||||
seq2  CCTTCCTTCCTTCTTTCTCTTTCCTTTTTCTCTTTCTCTTTCTCTTTCTC  100

seq1  TTTCTCTTTCTCTTTCTCTTTCTCTTTCGCTTTCGCTTTCGCTTTCGCTT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTCTTTCTCTTTCTCTTTCGCTTTCGCTTTCGCTTTCGCTT  150

seq1  TCGCTTTCGCTTTCGCTTTTTCTTTTGCTTTTGCTTTTGCTTTTTCTTTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTTCGCTTTCGCTTTTTCTTTTGCTTTTGCTTTTGCTTTTTCTTTT  200

seq1  TTCTTTTCTCTTCTTTCTGTTTTGAGACAAAATAGGCCTGGCTGTCCTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTCTTCTTTCTGTTTTGAGACAAAATAGGCCTGGCTGTCCTGG  250

seq1  AACTAGTGTAGACTAGGCTGGCCTGGAACTCACAGTGCCTGCCCTCTGCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTGTAGACTAGGCTGGCCTGGAACTCACAGTGCCTGCCCTCTGCC  300

seq1  TCTAGAGTGCTAGGAATAAAGGAGTGTGGCAACACGACCCAGTTGAAAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTGCTAGGAATAAAGGAGTGTGGCAACACGACCCAGTTGAAAGA  350

seq1  ACTCTGTAAGATACTCTGACAATGAAAGTACAAAAGATAACATGATAGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAAGATACTCTGACAATGAAAGTACAAAAGATAACATGATAGAT  400

seq1  GTTACAGACTCAGAACTTTGACAATAAGAAAGTATCAGCATTTTGACAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGACTCAGAACTTTGACAATAAGAAAGTATCAGCATTTTGACAAC  450

seq1  TCAGAGAAAAGACACTCACTTCGTTATAAATCACATAATGAGAAGAGGCG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAAAGACACTCACTTCGTTATAAATCACATAATGAGAAGAGGCG  500

seq1  ACCGATGTTTTCTTTTTGGTGTGTATTGGTGGGTTATATGGAAGGCA  541
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATGTTTTCTTTTTGGTGTGTATTGGTGGGTTATATGGAAGGCA  547