BAC Information

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BAC

Clone NameB6Ng01-174G16
Chromosome9 (Build37)1 (Build37)
Map Location 25,676,530 - 25,677,507177,164,152 - 177,164,601
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174G16.bB6Ng01-174G16.g
ACCGA002504GA002505
length979883
definitionB6Ng01-174G16.b B6Ng01-174G16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,676,530 - 25,677,507)(177,164,152 - 177,164,601)
sequence
gaattcttctgctaaagattattcctaagactgtttgaggatcaccctgc
ttggcattatctcaaacacgcatctggtcatgttttcaggaaaagtctgt
ttgataagtatctgatatcctgaatattgaactcatgtggtaacaaacca
aagaaggtaactaagctgttagatgaccatgctgaaaaagtgtatcttcc
aagtgacagaactaatattattatcttgctcttaaaacaaatctccaagt
cggctatggaaaaaaaaaaaaaaaaagaatgggatatacatttaaagggc
agtacaagacagaggaaagtttgctaaaggtagacagagcacacatgcac
aactccttgaattttggggtaaccagcttctccccatctccattctctct
gtgtgtttctgtgtctgtctctctgcttctttgtctctgtttctatctct
ctgtgtgtttcataatatatattaatatgtaataagttaaaagtttatat
gaatttcaaacagatgagtaactaactttgaaaaagtatactgacataac
tataaatgagaatttattcttcctaaatatctatagataacatgttttgg
ctatagtatttatttataaattgccaaagccatcatcaactacatattgc
aaacttgcctcatacctggtgaaatattagagaaggatatagtaaacaaa
ttcacctaaacacaaatattctacaaactaagtgattataaaatggcgtc
aagtagtactaagaaggaaaatagaggagaataagtgatgtggagagtaa
cacaaagagagctgctgttttaaacagggtactgtataaaacctgagtaa
atagggagagaaatatgtataaataagtcacatggagatctgagaaaagg
aaatttctgctcagataaaagctttgactatatttctttgcaatagatgg
atggatggatggatgggatggaatggatg

gaattctgacaaatggagattcttcacagatacttaaaagttacactcgt
acaagaatttatcagggcccaggaaataggggacttgtggtattgcatta
ttcatgagaaggtctgctagagcagaaagcttggtggtgggcttaacaat
agactagcttaacacctggctcccttctttgtggcagcagactggtcctg
ccttcttttgatttatacattccttttgtatcgtgccactgtaactccat
gtaactcctggtttcttgttattcttctgtataaaaagttcgatgcttga
cttgacaaattacattcagattctacacaatctcctgtgtgcatctgtct
gtcatttccaccgactccttgctcatctgcacccagagacctgtcctaca
cagacaaggtaccctagagagtctgctgcatgtctctgtttagtttctgt
ttccaagatttgtccattggtgagagtggggtgttgaaatctcccactat
tattgtgtgaggggcaatgtgtgctttgagctttactgaagttactttaa
tgaatatgacagcccttgcatttggagcatagatatttagaattgagagt
tcatcttggtagatttttatctttgatgaatatgaagtggccctccttgt
cttttttgataacttcgggttggaagtcaattttattcgatattagaatg
gtcactccagcttgttttcttcagaccatttgcttggaaaattgttttcc
agccttttactctgaggttagtgtctgtctttatccctgaggtgggtttc
ctgtaagcagcagaatgttgggttcctgtttgtgtagccagtctgttagt
ctatgtcctttattggggaattgagtccattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_25676530_25677507
seq2: B6Ng01-174G16.b_44_1022 (reverse)

seq1  CATCCA-TCCAT-CCATCCATCCATCCATCCATCTATTGCAAAGAAATAT  48
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCCATCCCATCCATCCATCCATCCATCTATTGCAAAGAAATAT  50

seq1  AGTCAAAGCTTTTATCTTGAGCAGAAATTTCCTTTTCTCAGATCTCCATG  98
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTCAAAGCTTTTATC-TGAGCAGAAATTTCCTTTTCTCAGATCTCCATG  99

seq1  TGACTTATTTATACATATTTCTCTCCCTATTTACTCAGGTTTTATACAGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATTTATACATATTTCTCTCCCTATTTACTCAGGTTTTATACAGT  149

seq1  ACCCTGTTTAAAACAGCAGCTCTCTTTGTGTTACTCTCCACATCACTTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTTAAAACAGCAGCTCTCTTTGTGTTACTCTCCACATCACTTAT  199

seq1  TCTCCTCTATTTTCCTTCTTAGTACTACTTGACGCCATTTTATAATCACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTATTTTCCTTCTTAGTACTACTTGACGCCATTTTATAATCACT  249

seq1  TAGTTTGTAGAATATTTGTGTTTAGGTGAATTTGTTTACTATATCCTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTAGAATATTTGTGTTTAGGTGAATTTGTTTACTATATCCTTCT  299

seq1  CTAATATTTCACCAGGTATGAGGCAAGTTTGCAATATGTAGTTGATGATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTCACCAGGTATGAGGCAAGTTTGCAATATGTAGTTGATGATG  349

seq1  GCTTTGGCAATTTATAAATAAATACTATAGCCAAAACATGTTATCTATAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCAATTTATAAATAAATACTATAGCCAAAACATGTTATCTATAG  399

seq1  ATATTTAGGAAGAATAAATTCTCATTTATAGTTATGTCAGTATACTTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGGAAGAATAAATTCTCATTTATAGTTATGTCAGTATACTTTTT  449

seq1  CAAAGTTAGTTACTCATCTGTTTGAAATTCATATAAACTTTTAACTTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAGTTACTCATCTGTTTGAAATTCATATAAACTTTTAACTTATT  499

seq1  ACATATTAATATATATTATGAAACACACAGAGAGATAGAAACAGAGACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTAATATATATTATGAAACACACAGAGAGATAGAAACAGAGACAA  549

seq1  AGAAGCAGAGAGACAGACACAGAAACACACAGAGAGAATGGAGATGGGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAGAGACAGACACAGAAACACACAGAGAGAATGGAGATGGGGA  599

seq1  GAAGCTGGTTACCCCAAAATTCAAGGAGTTGTGCATGTGTGCTCTGTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGTTACCCCAAAATTCAAGGAGTTGTGCATGTGTGCTCTGTCTA  649

seq1  CCTTTAGCAAACTTTCCTCTGTCTTGTACTGCCCTTTAAATGTATATCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCAAACTTTCCTCTGTCTTGTACTGCCCTTTAAATGTATATCCC  699

seq1  ATTCTTTTTTTTTTTTTTTTTCCATAGCCGACTTGGAGATTTGTTTTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTTTTTTTTTTTTTCCATAGCCGACTTGGAGATTTGTTTTAAG  749

seq1  AGCAAGATAATAATATTAGTTCTGTCACTTGGAAGATACACTTTTTCAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATAATAATATTAGTTCTGTCACTTGGAAGATACACTTTTTCAGC  799

seq1  ATGGTCATCTAACAGCTTAGTTACCTTCTTTGGTTTGTTACCACATGAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATCTAACAGCTTAGTTACCTTCTTTGGTTTGTTACCACATGAGT  849

seq1  TCAATATTCAGGATATCAGATACTTATCAAACAGACTTTTCCTGAAAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTCAGGATATCAGATACTTATCAAACAGACTTTTCCTGAAAACA  899

seq1  TGACCAGATGCGTGTTTGAGATAATGCCAAGCAGGGTGATCCTCAAACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGATGCGTGTTTGAGATAATGCCAAGCAGGGTGATCCTCAAACAG  949

seq1  TCTTAGGAATAATCTTTAGCAGAAGAATTC  978
      ||||||||||||||||||||||||||||||
seq2  TCTTAGGAATAATCTTTAGCAGAAGAATTC  979


seq1: chr1_177164152_177164601
seq2: B6Ng01-174G16.g_499_951 (reverse)

seq1  TCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTA  50
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TCAATGGACTCAATTCCCCAAT-AAAGGACATAGACTAACAGACTGGCTA  49

seq1  CACAAACAGG-ACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGG  99
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  CACAAACAGGAACCCAACATTCTGCTGCTTACAGGAAACCCACCTCAGGG  99

seq1  AAAAAGACAGACACT-ACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCA  148
      | ||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  ATAAAGACAGACACTAACCTCAGAGTAAAAGGCTGGAAAACAATTTTCCA  149

seq1  AGCAAATGGTCTGAAG-AAACAAGCTGGAGTAGCCATTCTAATATCGGAT  197
      |||||||||||||||| ||||||||||||||  |||||||||||||| ||
seq2  AGCAAATGGTCTGAAGAAAACAAGCTGGAGTGACCATTCTAATATCGAAT  199

seq1  AAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTT  247
      ||||| |||||||||||| ||||||||||||||||||||||||| |||||
seq2  AAAATTGACTTCCAACCCGAAGTTATCAAAAAAGACAAGGAGGGCCACTT  249

seq1  CATACTCATCAAAG-GCAAAATCCTCCAAGAGGAACTCTCAATTCTGAAT  296
      |||| |||||||||   ||||||  |||||| |||||||||||||| |||
seq2  CATATTCATCAAAGATAAAAATCTACCAAGATGAACTCTCAATTCTAAAT  299

seq1  ATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGT  346
      ||||| ||||||||||||||||| | || |||||||||||  |||| |||
seq2  ATCTATGCTCCAAATGCAAGGGCTGTCATATTCATTAAAGTAACTTCAGT  349

seq1  AAAGCTCAAAGCACACATTGCACCTCACACAATAATAGTGGGAGACTTCA  396
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  AAAGCTCAAAGCACACATTGCCCCTCACACAATAATAGTGGGAGATTTCA  399

seq1  ACACACCACTTTCATCAATGGATAGATCGTGGAAACAGAAACTAAACAGG  446
      |||| ||||| ||| ||||||| | ||| |||||||||||||||||||| 
seq2  ACACCCCACTCTCACCAATGGACAAATCTTGGAAACAGAAACTAAACAGA  449

seq1  GACA  450
      ||||
seq2  GACA  453


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