BAC Information

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BAC

Clone NameB6Ng01-174L11
Chromosome9 (Build37)
Map Location 120,867,846 - 121,045,276
singlet/doubletdoublet
Overlap geneCtnnb1, Ulk4
Upstream geneTtc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010
Downstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174L11.bB6Ng01-174L11.g
ACCGA002715GA002716
length519615
definitionB6Ng01-174L11.b B6Ng01-174L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,867,846 - 120,868,369)(121,044,687 - 121,045,276)
sequence
cagagtcagcagcagtgtggagcacagggagtttggccatggcctgctgc
caatgcatactcctgccagccgtcgcctgttattttcgttggtcacacaa
cccttcatcataccttttgtcttggagaaggaacagggagggtatgggag
tacggtggtctaggatgggtgattcatagctgatctatcagagttttttg
ggaaattaccaaatttgagctgcataaggtgctgttgctatcatcactct
atcccagaggctttatccaaggagctgtgcaacaccttggcttctcatct
gatctgtgacaggcagatcagactttcattctcaggaggtcaggcacagt
aagctgctgccactgctgcatgctctgccgggatcagaatcaagtgtgaa
ggcacactgctgctggtgtgtggtagatagtctcatgaactgtgtgaggc
ctggctttgtgtaattacttagaagagaagcctagaaagcagtgttcctg
gcaagatgtccttaccaca
gaattctataaaatcattttcttggaattatggaatcatcagttcatcta
aaccacgtcatcacatgttaagttcatcttcatattgattctgcaggaga
tttgctcaatagggtgggctgatgcctaggaaccattaggctgtgcaatc
gtgacaggaaagacagatcagcagtgagaagcaatactgggatgaagtct
ctgaggaccttgcctctcagagcgcacccatcacagccatgcaaaacggt
gggccatctcaaaaaaaacctcacttgcttgccgtagcctttcctggatt
gcttttgacagatgattattttaaaattccttatacaaaatatttagaca
agcacaaagatgctttatttttgttgactttgtcacatctgggctcagcc
catgtcacacagggaggaaccttgttggaccatgaagtgatcttctcaca
tctactctcaaagccaagagcagaccaggttagaagtgtagtcagcttca
cccacaatcctgccagatgtatcccgtcaaacatggatgggagaaaagga
tagaaggagagaaccatctcccggatgttgtcatctgacttcatgcacac
gtagcaacttgcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120867846_120868369
seq2: B6Ng01-174L11.b_39_563

seq1  GAATTCCAGAGTCAGCAGCAGTGTGGAGCACAGGGAGCTTGGCCATGGCC  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCCAGAGTCAGCAGCAGTGTGGAGCACAGGGAGTTTGGCCATGGCC  50

seq1  TGCTGCCAATGCATACTCCTGCCAGCCGTCGCCTG-GCTTTTCGTTGGTC  99
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TGCTGCCAATGCATACTCCTGCCAGCCGTCGCCTGTTATTTTCGTTGGTC  100

seq1  ACACAACCCTTCATCATACCTTTTGTCTTGGAGAAGGAACAGGGAGGGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACCCTTCATCATACCTTTTGTCTTGGAGAAGGAACAGGGAGGGTA  150

seq1  TGGGAGTACGGTGGTCTAGGATGGGTGATTCATAGCTGATCTATCAGAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTACGGTGGTCTAGGATGGGTGATTCATAGCTGATCTATCAGAGT  200

seq1  TTTTTGGGAAATTACCAAATTTGAGCTGCATAAGGTGCTGTTGCTATCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGAAATTACCAAATTTGAGCTGCATAAGGTGCTGTTGCTATCAT  250

seq1  CACTCTATCCCAGAGGCTTTATCCAAGGAGCTGTGCAACACCTTGGCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATCCCAGAGGCTTTATCCAAGGAGCTGTGCAACACCTTGGCTTC  300

seq1  TCATCTGATCTGTGACAGGCAGATCAGACTTTCATTCTCAGGAGGTCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGATCTGTGACAGGCAGATCAGACTTTCATTCTCAGGAGGTCAGG  350

seq1  CACAGTAAGCTGCTGCCACTGCTGCATGCTCTGCCGGGATCAGAATCAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAGCTGCTGCCACTGCTGCATGCTCTGCCGGGATCAGAATCAAG  400

seq1  TGTGAAGGCACACTGCTGCTGGTGTGTGGTAGATAGTCTCAGGAACTGTG  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGAAGGCACACTGCTGCTGGTGTGTGGTAGATAGTCTCATGAACTGTG  450

seq1  TGAGGCCTGGCTTTGTGTAATTACTTAGAAGAGAAGCCTAGAAAGCAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTGGCTTTGTGTAATTACTTAGAAGAGAAGCCTAGAAAGCAGTG  500

seq1  TTCCTGGCAAGATGTCCTTACCACA  524
      |||||||||||||||||||||||||
seq2  TTCCTGGCAAGATGTCCTTACCACA  525

seq1: chr9_121044687_121045276
seq2: B6Ng01-174L11.g_97_688 (reverse)

seq1  CTTGC-AGTTGCTACGTGTGCATGAAGTCAGATGACAACATCCGGGAGAT  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAGTTGCTACGTGTGCATGAAGTCAGATGACAACATCCGGGAGAT  50

seq1  GGTTCTCTCCTTCTATCCTTTTCTCCCATCCATGTTTGACGGGATACATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTCCTTCTATCCTTTTCTCCCATCCATGTTTGACGGGATACATC  100

seq1  TGGCAGGATTGTGGGTGAAGCTGACTACACTTCTAACCTGGTCTGCTCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGATTGTGGGTGAAGCTGACTACACTTCTAACCTGGTCTGCTCTT  150

seq1  GGCTTTGAGAGTAGATGTGAGAAGATCACTTCATGGTCCTGCAAGGTTCC  199
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GGCTTTGAGAGTAGATGTGAGAAGATCACTTCATGGTCCAACAAGGTTCC  200

seq1  TCCCTGTGTGACATGGGCTGAGCCCAGATGTGACAAAGTCAACAAAAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGTGACATGGGCTGAGCCCAGATGTGACAAAGTCAACAAAAATA  250

seq1  AAGCATCTTTGTGCTTGTCTAAATATTTTGTATAAGGAATTTTAAAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTTGTGCTTGTCTAAATATTTTGTATAAGGAATTTTAAAATAA  300

seq1  TCATCTGTCAAAAGCAATCCAGGAAAGGCTACGGCAAGCAAGTGAGGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTCAAAAGCAATCCAGGAAAGGCTACGGCAAGCAAGTGAGGTTT  350

seq1  TTTTTGAGATGGCCCACCGTTTTGCATGGCTGTGATGGGTGCGCTCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGATGGCCCACCGTTTTGCATGGCTGTGATGGGTGCGCTCTGAG  400

seq1  AGGCAAGGTCCTCAGAGACTTCATCCCAGTATTGCTTCTCACTGCTGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGTCCTCAGAGACTTCATCCCAGTATTGCTTCTCACTGCTGATC  450

seq1  TGTCTTTCCTGTCACGATTGCACAGCCTAATGGTTCCTAGGCATCAGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCCTGTCACGATTGCACAGCCTAATGGTTCCTAGGCATCAGCCC  500

seq1  ACCCTATTGAGCAAATCTCCTGCAGAATCAATATGAAGATGAACTT-GCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  ACCCTATTGAGCAAATCTCCTGCAGAATCAATATGAAGATGAACTTAACA  550

seq1  TGTGATGACGTGGTTTAGATGAACTGATGATTCCATAATTCC  590
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGACGTGGTTTAGATGAACTGATGATTCCATAATTCC  592