BAC Information

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BAC

Clone NameB6Ng01-176G23
Chromosome9 (Build37)
Map Location 64,799,198 - 64,923,895
singlet/doubletdoublet
Overlap geneSlc24a1, 2010321M09Rik, Ptplad1, Dpp8
Upstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik
Downstream geneNope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176G23.bB6Ng01-176G23.g
ACCGA003969GA003970
length1,1991,088
definitionB6Ng01-176G23.b B6Ng01-176G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,799,198 - 64,800,371)(64,922,794 - 64,923,895)
sequence
gaattctagagggtctctctccttcccctgcgagaggggaggagagctga
gcctggctgaaccatcctgcctaaacacatcatttaccttcagaccttga
catctgggtcttccaagttcgggaaacttgtcagaatccggggtctcgaa
gagtaggtgtgaagtggaaccacaaggaacaccccattctcctcctgccg
gctcccttaggaatcctaattcaagggtatgaagggcatgtcaggggacg
cagatccaatcctgcctaatacccgcctcctctaagaagcttacggggca
ttgtacaagttctgggccccataacaaacccgagggggtagacttttcac
cagggacacagaatagaccacctccaccagagtcagtgggggaacttctc
aaatttgcaactaagctataggaattgtaggccatttagggcttccatgc
ttagacgggaggaaagacatagacagaagcagaaagctctgagaaaccaa
gagaaagtacgtggggcttaagcgatcaaaagacatcagcaccaggctcc
actagctaccgtgggagtctaaccataagtgtaaatgtggagacagtaac
acccgttccacctagatgtagggtgagtatgaaaatcaagttgaaactga
gggcccgggaggaaaatattcagcaaatgtgaaagcattttggaatgtgt
tttattaagccaaaagaaaacccttagggaatcacgctgggacatcacaa
gatactgaagatgctggctcctgagcctctcgaagctctagccttgttag
cattttgtctaagctccgccccacagttacctggcaacagccaggtatgc
ctgactcactataaaaggagctgcttgccccctctgctctctcttgctct
tgcctccctgctcacgctctgtccccctctcccccctctccaccccacgt
gctcatggctggtctctacttatctattcatcttctctcttcctttccct
ctccctttcccttcccccctccctttctccaccttctactacccttctta
ttcccccctccccatgccctggaataaaactctattctggttactctaac
caaatggccgtgttgcctgggttccttacccaaggaaccccctccctcac
acctgaacatacgcctccactaaaaataattattcccctcccctcctct
gaattctatctaattacaaaaacaaacaagagagctgggtggtggtggtg
aacaactttaatctcagcatgtgggaggcagaggcagggaaatctttgaa
ttcaaggccagcctgggctacacagagaaactctgcctaaaaaaacccga
aatcaagaaaacaaacaagcaaaaactgaaatacaataatagctacgtac
ccggaagatatccgacctctgcattaatgccatcagggagaggtagccac
cataggaccagccgtggatgcccactcgatccaagtcaatgaagtcatac
tgagatgctaggtactggagtccttccacttgatcatcgatttctatttg
accctgtcaaagagggggaaagctcactggctctgatgtacactagagtc
tttgagaattctttttaatgctgcttcatgtttttactaaaaattcctgg
agagtttctcttttcagattagagtttaattaacaagtgatattctattt
tgccccaggaaatgtaaaataaaaatgcttctataggtaaggacctgcta
ctctgatgggggtttagtccccaggcctttcctgtcattgcccacactgt
ccctaactacatcgtgtctcccactcgtttgttctgttgtctgctaagag
gccagcaacttccttgtaacaagccttcctctatccaaagacaaaaattc
agcccctttaagagattaattttacttctccttttagcacttaagtgcaa
caaaacagaggacattacccctgaggccctaacttcctcttttccagcat
tttacctctagcaaagctctggacggcttagttcctgccagtaccaccca
gggtatcacttgggcctgccagtaccacccagggtatcacctgggcctgc
cagtgcacacagtctcgcttcactgagccaaaccaaaaaaataaacacca
aaaacttacatgagaatacacataaggtcaagaactgtctgtgggagagc
atcccatgtcttactcagcatgtcaacacactggcacacaggactgctta
cagtgcaaagaccatcggctgtcatcattccaagcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64799198_64800371
seq2: B6Ng01-176G23.b_49_1247

seq1  GAATTCTAGAGGGTCTCTCTCCTTCCCCTGCGAGAGGGGAGGAGAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGGGTCTCTCTCCTTCCCCTGCGAGAGGGGAGGAGAGCTGA  50

seq1  GCCTGGCTGAACCATCCTGCCTAAACACATCATTTACCTTCAGACCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTGAACCATCCTGCCTAAACACATCATTTACCTTCAGACCTTGA  100

seq1  CATCTGGGTCTTCCAAGTTCGGGAAACTTGTCAGAATCCGGGGTCTCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGTCTTCCAAGTTCGGGAAACTTGTCAGAATCCGGGGTCTCGAA  150

seq1  GAGTAGGTGTGAAGTGGAACCACAAGGAACACCCCATTCTCCTCCTGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGTGTGAAGTGGAACCACAAGGAACACCCCATTCTCCTCCTGCCG  200

seq1  GCTCCCTTAGGAATCCTAATTCAAGGGTATGAAGGGCATGTCAGGGGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTAGGAATCCTAATTCAAGGGTATGAAGGGCATGTCAGGGGACG  250

seq1  CAGATCCAATCCTGCCTAATACCCGCCTCCTCTAAGAAGCTTACGGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAATCCTGCCTAATACCCGCCTCCTCTAAGAAGCTTACGGGGCA  300

seq1  TTGTACAAGTTCTGGGCCCCATAACAAACCCGAGGGGGTAGACTTTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAGTTCTGGGCCCCATAACAAACCCGAGGGGGTAGACTTTTCAC  350

seq1  CAGGGACACAGAATAGACCACCTCCACCAGAGTCAGTGGGGGAACTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACACAGAATAGACCACCTCCACCAGAGTCAGTGGGGGAACTTCTC  400

seq1  AAATTTGCAACTAAGCTATAGGAATTGTAGGCCATTTAGGGCTTCCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCAACTAAGCTATAGGAATTGTAGGCCATTTAGGGCTTCCATGC  450

seq1  TTAGACGGGAGGAAAGACATAGACAGAAGCAGAAAGCTCTGAGAAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACGGGAGGAAAGACATAGACAGAAGCAGAAAGCTCTGAGAAACCAA  500

seq1  GAGAAAGTACGTGGGGCTTAAGCGATCAAAAGACATCAGCACCAGGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTACGTGGGGCTTAAGCGATCAAAAGACATCAGCACCAGGCTCC  550

seq1  ACTAGCTACCGTGGGAGTCTAACCATAAGTGTAAATGTGGAGACAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTACCGTGGGAGTCTAACCATAAGTGTAAATGTGGAGACAGTAAC  600

seq1  ACCCGTTCCACCTAGATGTAGGGTGAGTATGAAAATCAAGTTGAAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTTCCACCTAGATGTAGGGTGAGTATGAAAATCAAGTTGAAACTGA  650

seq1  GGGCCCGGGAGGAAAATATTCAGCAAATGTGAAAGCATTTTGGAATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGGGAGGAAAATATTCAGCAAATGTGAAAGCATTTTGGAATGTGT  700

seq1  TTTATTAAGCCAAAAGAAAACCCTTAGGGAATCACGCTGGGACATCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAGCCAAAAGAAAACCCTTAGGGAATCACGCTGGGACATCACAA  750

seq1  GATACTGAAGATGCTGGCTCCTGAGCCTCTCGAAGCTCTAGCCTTGTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAAGATGCTGGCTCCTGAGCCTCTCGAAGCTCTAGCCTTGTTAG  800

seq1  CATTTTGTCTAAGCTCCGCCCCACAGTTACCTGGCAACAGCCAGGTATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCTAAGCTCCGCCCCACAGTTACCTGGCAACAGCCAGGTATGC  850

seq1  CTGACTCACTATAAAAGGAGCTGCTTGCCCCCTCTGCTCTCTCTTGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCACTATAAAAGGAGCTGCTTGCCCCCTCTGCTCTCTCTTGCTCT  900

seq1  TGCCTCCCTGCTCACGCTCTGTCCCCCTCTCCCCCCTCTCCACCCCACGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCTGCTCACGCTCTGTCCCCCTCTCCCCCCTCTCCACCCCACGT  950

seq1  GCTCATGGCTGGTCTCTACTTATCTATTCATCTTCTCTCTTCCTTTCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGCTGGTCTCTACTTATCTATTCATCTTCTCTCTTCCTTTCCCT  1000

seq1  CTCCCTTTCCCTT-CCCCCTCCCTTTCTCCACC-TCTACTA-CCTTCTTA  1047
      ||||||||||||| ||||||||||||||||||| ||||||| ||||||||
seq2  CTCCCTTTCCCTTCCCCCCTCCCTTTCTCCACCTTCTACTACCCTTCTTA  1050

seq1  AT-CCCCCTCCCCATGCCCT-GAAT-AAACTCTATTCT-GTTACT-AAAC  1092
       | ||||||||||||||||| |||| |||||||||||| ||||||  |||
seq2  TTCCCCCCTCCCCATGCCCTGGAATAAAACTCTATTCTGGTTACTCTAAC  1100

seq1  CAA--TGCCGTG-TGGCTGG--TCCCTA-CCAAGGCACCCCCTTCCCTCA  1136
      |||   |||||| || ||||  ||| || |||||| |||||| |||||||
seq2  CAAATGGCCGTGTTGCCTGGGTTCCTTACCCAAGGAACCCCC-TCCCTCA  1149

seq1  CACCTGA--CTACGCCTCCACTAAATATA----------TTCCCTCCTCT  1174
      |||||||   ||||||||||||||| |||          | |||||||||
seq2  CACCTGAACATACGCCTCCACTAAAAATAATTATTCCCCTCCCCTCCTCT  1199

seq1: chr9_64922794_64923895
seq2: B6Ng01-176G23.g_64_1151 (reverse)

seq1  GCTGCTTTGGGAAATGATGACAGGCCGATGTTCCTTTTGCACTGTAAGGC  50
      |||||||   | |||||||||| ||||||| ||  |||||||||||| ||
seq2  GCTGCTT---GGAATGATGACA-GCCGATGGTC--TTTGCACTGTAA-GC  43

seq1  AGTCCCTGTGGTTGCCAGTGTGTTGGACATGCTGAGTAAGACATGGGATG  100
      ||| ||||||  |||||||||||| |||||||||||||||||||||||||
seq2  AGT-CCTGTG--TGCCAGTGTGTT-GACATGCTGAGTAAGACATGGGATG  89

seq1  CTCTCCCACAGACAGTTCTTTGACCTTATGTTGTATTCTCATGTAAGTTT  150
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CTCTCCCACAGACAGTTC-TTGACCTTATG-TGTATTCTCATGTAAGTTT  137

seq1  TTGGTTGTTTTATTTTTTTGGTTTTGGCTCAGTGAAGCGAGACTGTGTGC  200
      |||||   ||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGT--GTTTATTTTTTTGG-TTTGGCTCAGTGAAGCGAGACTGTGTGC  184

seq1  ACTGGCAGG-CCAGGTGATACCCTGGGTGGTACTGGCAGG-CCAAGTGAT  248
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  ACTGGCAGGCCCAGGTGATACCCTGGGTGGTACTGGCAGGCCCAAGTGAT  234

seq1  ACCCTGGGTGGTACTGGCAGGAACTAAGCCGTCCAGAGCTTTGCTAGAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGTGGTACTGGCAGGAACTAAGCCGTCCAGAGCTTTGCTAGAGG  284

seq1  TAAAATGCTGGAAAAGAGGAAGTTAGGGCCTCAGGGGTAATGTCCTCTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTGGAAAAGAGGAAGTTAGGGCCTCAGGGGTAATGTCCTCTGT  334

seq1  TTTGTTGCACTTAAGTGCTAAAAGGAGAAGTAAAATTAATCTCTTAAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCACTTAAGTGCTAAAAGGAGAAGTAAAATTAATCTCTTAAAGG  384

seq1  GGCTGAATTTTTGTCTTTGGATAGAGGAAGGCTTGTTACAAGGAAGTTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATTTTTGTCTTTGGATAGAGGAAGGCTTGTTACAAGGAAGTTGC  434

seq1  TGGCCTCTTAGCAGACAACAGAACAAACGAGTGGGAGACACGATGTAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTTAGCAGACAACAGAACAAACGAGTGGGAGACACGATGTAGTT  484

seq1  AGGGACAGTGTGGGCAATGACAGGAAAGGCCTGGGGACTAAACCCCCATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGTGTGGGCAATGACAGGAAAGGCCTGGGGACTAAACCCCCATC  534

seq1  AGAGTAGCAGGTCCTTACCTATAGAAGCATTTTTATTTTACATTTCCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCAGGTCCTTACCTATAGAAGCATTTTTATTTTACATTTCCTGG  584

seq1  GGCAAAATAGAATATCACTTGTTAATTAAACTCTAATCTGAAAAGAGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATAGAATATCACTTGTTAATTAAACTCTAATCTGAAAAGAGAAA  634

seq1  CTCTCCAGGAATTTTTAGTAAAAACATGAAGCAGCATTAAAAAGAATTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGGAATTTTTAGTAAAAACATGAAGCAGCATTAAAAAGAATTCT  684

seq1  CAAAGACTCTAGTGTACATCAGAGCCAGTGAGCTTTCCCCCTCTTTGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCTAGTGTACATCAGAGCCAGTGAGCTTTCCCCCTCTTTGACA  734

seq1  GGGTCAAATAGAAATCGATGATCAAGTGGAAGGACTCCAGTACCTAGCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAATAGAAATCGATGATCAAGTGGAAGGACTCCAGTACCTAGCAT  784

seq1  CTCAGTATGACTTCATTGACTTGGATCGAGTGGGCATCCACGGCTGGTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATGACTTCATTGACTTGGATCGAGTGGGCATCCACGGCTGGTCC  834

seq1  TATGGTGGCTACCTCTCCCTGATGGCATTAATGCAGAGGTCGGATATCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGCTACCTCTCCCTGATGGCATTAATGCAGAGGTCGGATATCTT  884

seq1  CCGGGTACGTAGCTATTATTGTATTTCAGTTTTTGCTTGTTTGTTTTCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTACGTAGCTATTATTGTATTTCAGTTTTTGCTTGTTTGTTTTCTT  934

seq1  GATTTCGGGTTTTTTTAGGCAGAGTTTCTCTGTGTAGCCCAGGCTGGCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCGGGTTTTTTTAGGCAGAGTTTCTCTGTGTAGCCCAGGCTGGCCT  984

seq1  TGAATTCAAAGATTTCCCTGCCTCTGCCTCCCACATGCTGAGATTAAAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAAAGATTTCCCTGCCTCTGCCTCCCACATGCTGAGATTAAAGT  1034

seq1  TGTTCACCACCACCACCCAGCTCTCTTGTTTGTTTTTGTAATTAGATAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCACCACCACCCAGCTCTCTTGTTTGTTTTTGTAATTAGATAGA  1084

seq1  ATTC  1102
      ||||
seq2  ATTC  1088