BAC Information

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BAC

Clone NameB6Ng01-177F20
Chromosome9 (Build37)
Map Location 105,611,242 - 105,722,007
singlet/doubletdoublet
Overlap geneE330026B02Rik
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4
Downstream geneEG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177F20.bB6Ng01-177F20.g
ACCGA004654GA004655
length8711,130
definitionB6Ng01-177F20.b B6Ng01-177F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,721,143 - 105,722,007)(105,611,242 - 105,612,595)
sequence
gaattctgcgggtagctaaagctgtttcactgcgtctggctccgtggaat
tcttggtcctgactttgctcctaaatccctgttggcatttaggaaactgt
cctggaacatggagggaggcagtgtgtgtgcttggctgaggagccaatgg
ggcgaagctaccatctgtgggattatgactgaacgcctctaagtcagaat
cccgcccaggcggaccgatatggcagcgccgaggaagccttggttggccc
tggatagctggatcctcatctgtccccgctaggcaaggtccccgcgtcgt
ccccgcggcggcgcggggtctccccccgccgggcgtcgggaccggggttc
ggtgcggagagccgttcgtcttggtgtgatctctgagcagaagggagctt
gctgtaaccccataactagagaaataccacaaaatcccattctgttgttc
atagaggtggttcagatgtgctcatgaaggtgaagctggctcctccacct
tctggcacgacattccagtcccctctgtggtagccatcgtttgttaagca
tgactttcttatctgcaccctcaggtctctcctgagcaccccatttctgg
atctctgactgtccacaaggaacttgaactgcacatatgctgcagccccc
aacgagtcccacacagtatttcaaccccttcccctcttcccacgaatggt
accactcagtggccactctagaaagcagccctgaagccctgtcctttccc
ccaacccccatgaatgactccagctcatcagtttctgattttatttccaa
cagtttaactggatcccacagatccttagcaaacctttcctgaagcccct
tcatttagtgatttccctggt
caggttagttcgccaggcggtcgcctggccgtctactttttggtgacctc
tctgaggatccgcgcaattggcttgataaagaacaggataaggaacagtg
cttggtcaatagcaatgaagcacctacccttgtatttagctgactggaat
gaccttgatctgaaaggtcagaaaatatccctatggattttcttatgatg
tttctgaagattgccgaaatacagggataaaaagggctttatgccctgct
tactgaaaaggcgcgcttgaccgagggcacgttgctgaacgcaatcacca
caggtacaatgtccagggcactgaactccatggcggctgtggtaatggtc
tggcctccagcggatggaccactgctgaagaacgtggcgattcttctcac
atgagcccctggaagggttctcttgaagacattcctggagatgaacctca
tggctttgccaatctccctgctgtcggaggatctctcataaggaagagct
ttaatcgccgtgagcagctggtccttcctgtaggcatctgagaagcggat
gaggtgcctggtgtgggagttgtaggctaggatggcaacgcgggcaccca
cggggcagttggcctccctaaccttgacatccctaactagggagaccatc
atccccttcattcgctcaaagtcctgctctgtgacatcccgggactggtc
caggacaaacaccaactcagttggatgcactgggcactcagttttcctga
aagacaaaaaacaaaaaccatgcttcctgtcatgtaggatgtttgcctac
agcaatacacggaaagcaaaatcattttaaatgctaactattcaaatatt
taagcattaaataattaataacccaaatattaaaacatataaaatattaa
atgtttacagctttgaatcattaaaatgggctgttctaaagctggctata
tggtcctccaggattaggcagaaaagaaaacagtcctaatccacatgatt
tggggattaaacttggtaggttaattacccagtccctctcaagatgggag
aacggttttggaaatgtcttaaccccgcagaaagcccggactccaagggc
atggtctatcgcatctgtactttattccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_105721143_105722007
seq2: B6Ng01-177F20.b_49_919 (reverse)

seq1  AACAGGG-AATCACTAAATG-AGGGGC-TCAGG-AAGGTTTGCTAA-GAT  45
      | ||||| |||||||||||| |||||| ||||| |||||||||||| |||
seq2  ACCAGGGAAATCACTAAATGAAGGGGCTTCAGGAAAGGTTTGCTAAGGAT  50

seq1  CTGTGGGATCCAGTTAAACTGTTGGGAATTAAAATCAGAAACTGATGAGC  95
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  CTGTGGGATCCAGTTAAACTGTT-GGAAATAAAATCAGAAACTGATGAGC  99

seq1  TGGAGTCATTCATGGGGGTTGGGGGAAAGGACAGGGCTTCAGGGCTGCTT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATTCATGGGGGTTGGGGGAAAGGACAGGGCTTCAGGGCTGCTT  149

seq1  TCTAGAGTGGCCACTGAGTGGTACCATTCGTGGGAAGAGGGGAAGGGGTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTGGCCACTGAGTGGTACCATTCGTGGGAAGAGGGGAAGGGGTT  199

seq1  G-AATACTGTGTGGGACTCGTTGGGGGCTGCAGCATATGTGCAGTTCAAG  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTGTGTGGGACTCGTTGGGGGCTGCAGCATATGTGCAGTTCAAG  249

seq1  TTCCTTGTGGACAGTCAGAGATCCAG-AATGGGGTGCTCAGGAGAGACCT  293
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCCTTGTGGACAGTCAGAGATCCAGAAATGGGGTGCTCAGGAGAGACCT  299

seq1  GAGGGTGCAGATAAGAAAGTCATGCTTAACAAACGATGGCTACCACAGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCAGATAAGAAAGTCATGCTTAACAAACGATGGCTACCACAGAG  349

seq1  GGGACTGGAATGTCGTGCCAGAAGGTGGAGGAGCCAGCTTCACCTTCATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGAATGTCGTGCCAGAAGGTGGAGGAGCCAGCTTCACCTTCATG  399

seq1  AGCACATCTGAACCACCTCTATGAACAACAGAATGGGATTTTGTGGTATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCTGAACCACCTCTATGAACAACAGAATGGGATTTTGTGGTATT  449

seq1  TCTCTAGTTATGGGGTTACAGCAAGCTCCCTTCTGCTCAGAGATCACACC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTATGGGGTTACAGCAAGCTCCCTTCTGCTCAGAGATCACACC  499

seq1  AAGACGAACGGCTCTCCGCACCGAACCCCGGTCCCGACGCCCGGCGGGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGAACGGCTCTCCGCACCGAACCCCGGTCCCGACGCCCGGCGGGGG  549

seq1  GAGACCCCGCGCCGCCGCGGGGACGACGCGGGGACCTTGCCTAGCGGGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCGCGCCGCCGCGGGGACGACGCGGGGACCTTGCCTAGCGGGGA  599

seq1  CAGATGAGGATCCAGCTATCCAGGGCCAACCAAGGCTTCCTCGGCGCTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGGATCCAGCTATCCAGGGCCAACCAAGGCTTCCTCGGCGCTGC  649

seq1  CATATCGGTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCATAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCGGTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCATAA  699

seq1  TCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACACACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACACACA  749

seq1  CTGCCTCCCTCCATGTTCCAGGACAGTTTCCTAAATGCCAACAGGGATTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCTCCATGTTCCAGGACAGTTTCCTAAATGCCAACAGGGATTT  799

seq1  AGGAGCAAAGTCAGGACCAAGAATTCCACGGAGCCAGACGCAGTGAAACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAAGTCAGGACCAAGAATTCCACGGAGCCAGACGCAGTGAAACA  849

seq1  GCTTTAGCTACCCGCAGAATTC  865
      ||||||||||||||||||||||
seq2  GCTTTAGCTACCCGCAGAATTC  871

seq1: chr9_105611242_105612595
seq2: B6Ng01-177F20.g_75_1130

seq1  GATAATGAACAGGATAATGAACAGTGCTTGGTAAATAGCAATGAAGCACC  50
      ||||| ||||||||||| |||||||||||||| |||||||||||||||||
seq2  GATAAAGAACAGGATAAGGAACAGTGCTTGGTCAATAGCAATGAAGCACC  50

seq1  TACCCTTGTATTTAGCTAACTGGAATGACCTTGTTCTGAAAGGCAAGAAA  100
      ||||||||||||||||| ||||||||||||||| |||||||||  |||||
seq2  TACCCTTGTATTTAGCTGACTGGAATGACCTTGATCTGAAAGGTCAGAAA  100

seq1  ATATAGCTATGTATTTTCTTATGATGTTTCTGAAGATTGGTGAAATACAG  150
      ||||  ||||| |||||||||||||||||||||||||||  |||||||||
seq2  ATATCCCTATGGATTTTCTTATGATGTTTCTGAAGATTGCCGAAATACAG  150

seq1  GGATAAAAAGGGCTTTATGCAGTGCTTACTGAAAAGGCGCGCTTGACCGA  200
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GGATAAAAAGGGCTTTATGCCCTGCTTACTGAAAAGGCGCGCTTGACCGA  200

seq1  GGGCACGTTGCTGAACGCAATCACCACAGGTACAATGTCCAGGGCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGTTGCTGAACGCAATCACCACAGGTACAATGTCCAGGGCACTGA  250

seq1  ACTCCATGGCGGCTGTGGTAATGGTCTGGGCGTCGGCCGATGGACCACTG  300
      ||||||||||||||||||||||||||||| |  | || ||||||||||||
seq2  ACTCCATGGCGGCTGTGGTAATGGTCTGGCCTCCAGCGGATGGACCACTG  300

seq1  CTAAAGAACGTGGCGATTCTTCTCACATGAGCCCCTGGAAGGGTTCTCTT  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAACGTGGCGATTCTTCTCACATGAGCCCCTGGAAGGGTTCTCTT  350

seq1  GAAGACATTCCTGGAGATGAACCTCATGGCTTTGCCAATCTCCCTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATTCCTGGAGATGAACCTCATGGCTTTGCCAATCTCCCTGCTGT  400

seq1  CGGAGGATCTCTCATAAGGAAGAGCTTTAATCGCCGTGAGCAGCTGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGATCTCTCATAAGGAAGAGCTTTAATCGCCGTGAGCAGCTGGTCC  450

seq1  TTCCTGTAGGCATCTGAGAAGCGGATGAGGTGCCTGGTGTGGGAGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTAGGCATCTGAGAAGCGGATGAGGTGCCTGGTGTGGGAGTTGTA  500

seq1  GGCTAGGATGGCAACGCGGGCACCCACGGGGCAGTTGGCCTCCCTAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGATGGCAACGCGGGCACCCACGGGGCAGTTGGCCTCCCTAACCT  550

seq1  TGACATCCCTAACTAGGGAGACCATCATCCCCTTCATTCGCTCAAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCCTAACTAGGGAGACCATCATCCCCTTCATTCGCTCAAAGTCC  600

seq1  TGCTCTGTGACATCCCGGGACTGGTCCAGGACAAACACCAACTCAGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGACATCCCGGGACTGGTCCAGGACAAACACCAACTCAGTTGG  650

seq1  ATGCACTGGGCACTCAGGTTTTCCTGAAAGACAAAAAACAAAAAACCATG  700
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  ATGCACTGGGCACTCA-GTTTTCCTGAAAGACAAAAAAC-AAAAACCATG  698

seq1  CTTCCTGTCATGTAGGATGTTTGCCTACAAGCAATACACGGAAAGCAAAA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCCTGTCATGTAGGATGTTTGCCTAC-AGCAATACACGGAAAGCAAAA  747

seq1  TCATTTTAAATGCTAACTATTCAAATATTTAAGCATTAAATAATTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAATGCTAACTATTCAAATATTTAAGCATTAAATAATTAATAA  797

seq1  CCCAAATATTAAAACATATAAAATATTAAATGTTTACAGC-TTGAATCAT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCAAATATTAAAACATATAAAATATTAAATGTTTACAGCTTTGAATCAT  847

seq1  TAAAAT-GGCTGTTCTAAAAGCTGGCTATATGTTCCTCCAGGA-TAAGCA  897
      |||||| ||||||||| ||||||||||||||| |||||||||| || |||
seq2  TAAAATGGGCTGTTCT-AAAGCTGGCTATATGGTCCTCCAGGATTAGGCA  896

seq1  GAAAAGAAAACAGTCTAAAATCAACATGATTT-GGGATTAAACTT-GTAA  945
      |||||||||||||||   |||| ||||||||| |||||||||||| ||| 
seq2  GAAAAGAAAACAGTC-CTAATCCACATGATTTGGGGATTAAACTTGGTAG  945

seq1  GTTAATTACCCAGTCCCT-TCTAGATGGTAGAACCTGTTTGGAAATGTCC  994
      |||||||||||||||||| || |||||| |||||   ||||||||||| |
seq2  GTTAATTACCCAGTCCCTCTCAAGATGGGAGAACGGTTTTGGAAATGT-C  994

seq1  TTAACCCCGCAG-AAGCC--GACT-CAAAGGCATGGTCATTCGCATCTGT  1040
      |||||||||||| |||||  |||| ||| |||||||||  ||||||||||
seq2  TTAACCCCGCAGAAAGCCCGGACTCCAAGGGCATGGTCTATCGCATCTGT  1044

seq1  ACTTTAAT-CATGTTGAAACACAAGTTCATTTCACTTAATGAGGAAGAAA  1089
      |||||| | |||                                      
seq2  ACTTTATTCCAT--------------------------------------  1056

seq1  CAAGGGACAAGAACTTTCAAGGAATGGCTGTGGAGACTCCTCTTATAATT  1139
                                                        
seq2  --------------------------------------------------  1056

seq1  AAAAGCAAACGGAGGATAAGGGAGTAGGGATGTAGCCCAGTCAGTATGGT  1189
                                                        
seq2  --------------------------------------------------  1056

seq1  GCTCTTCTGGCATGTGCAAAGTCCTGGGTTTGATCCTGGGCATCACAGAA  1239
                                                        
seq2  --------------------------------------------------  1056

seq1  GACAGATATGGTAGCTTATGCCTGTACACACACACTTGAACAGTAGAGCC  1289
                                                        
seq2  --------------------------------------------------  1056

seq1  GGGAGGGTCAGGAGTTCAAGGTCATCCTGGGCTACAGAGCTCCCAGACAA  1339
                                                        
seq2  --------------------------------------------------  1056

seq1  AAGGGATGCTTCCAT  1354
                     
seq2  ---------------  1056