BAC Information

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BAC

Clone NameB6Ng01-177I21
Chromosome9 (Build37)8 (Build37)
Map Location 51,437,849 - 51,439,038119,163,511 - 119,163,627
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374
Downstream geneLOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177I21.bB6Ng01-177I21.g
ACCGA004789GA004790
length1,192400
definitionB6Ng01-177I21.b B6Ng01-177I21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,437,849 - 51,439,038)(119,163,511 - 119,163,627)
sequence
gaattcactggttactgaacctttcctctctgggggctcctaatatgact
ttctcccctgctccctgccctcttgtcatacctcccatgccatctgtcca
ggacgcaaggctcttctgtcctgagcctctgtgcctcagtcaccttaacc
tagaacactcattctcaccttcctatctgggtctatctgcctgagttctg
ggaaacatcacccctccctctaggaaacattctcatgactccagaactgt
gacccatcctttcaaagcggtactgatgacgaggacggctttaacttttg
tgtttacacaacagtttgtttagttcttacttccaattgggcataaatcc
ctctttcatctttttgatattttgccctattttgtaaactccaagattat
gactgtaaggtccaaaatgttttatgtattactaatgcaagaagaagcat
tgtcaagtatgatgactattcattttcaaaagaaatatgaccacttatat
cttaaaaatgcaaaataaaagtgtgtgtcatattaagattgcaatgttac
tgcagcttcaaaaaaagcctagcttataacagacacatggatgcttcttt
taaaagtaaaagaagaattaccatagaatagagcttatagtatcagtcaa
aggtgtgtggggataatgagatggtttaaaagttggaagacttagttttt
agatgttacccaagaaaagtaactacatgatcccttttaataggctttat
tttatacagttctagattcacagaaaaaaactgaagaggaagtacagagt
acacacacacacacacacacacactccctgtctctctcttctctcatacc
ctcccctattattagattatagattacaattgcccaactttttattgaca
caccataatcacgtcaagttcttaacttccattaggattcacttctggtg
ttcatctgagggcttagatgaataatgtatagcaccataattttatatcc
gagaaagcccctccatgcccccccatttatatgcccctaccccaaccccc
ctctcttgtctattgcctctatagccttgactttggcagaaatagtgcca
catgcattatacatatggctggaatacagagacctctcgcaaccttttaa
agcttgcctagttccagtcctttcatcgccttgaagttcatt
tcttattgagcccattttacttaggagagtcataagcaaggccagtaact
gagatggagactgggcatctagtttgcttctccgttgaggtgataaagct
ctggtcaaaagcatctagggagagaagggtttatttggctgacaagttac
actccatcatcaagggaagccaaagtaggaactgaagcagaggttataga
gaaaagctgtttattggcttgctcagctacctctctgatacagctcagtc
acaccagtgtaaggatggcattgcccacagtgctagtctgatggagataa
ttccacaattgaggttcccttttcctgtgtatgtcaagtttacaacaaag
attagccatcatttcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_51437849_51439038
seq2: B6Ng01-177I21.b_46_1237 (reverse)

seq1  AATGAACTATCAA-GCGATGAAAAGACATGAAAAACTAAGCAAAGCCTAA  49
      |||||||| |||| ||||||||| |||  |   ||||| ||||    |||
seq2  AATGAACT-TCAAGGCGATGAAAGGACTGG---AACTAGGCAAGCTTTAA  46

seq1  AAGGTTGC-AGA-GTCTCTG-ATTCCAGCCATATG-ATATTCCATTGTGC  95
      |||||||| ||| ||||||| |||||||||||||| ||| | |||   ||
seq2  AAGGTTGCGAGAGGTCTCTGTATTCCAGCCATATGTATAATGCATGTGGC  96

seq1  ACTA-TTCTGCCAAAGTCAAGGCTATAGAGACAATAGAC-AGAGAGGGGG  143
      |||| ||||||||||||||||||||||||| |||||||| ||||||||||
seq2  ACTATTTCTGCCAAAGTCAAGGCTATAGAGGCAATAGACAAGAGAGGGGG  146

seq1  TTTGGGGTAGGGGCATATAAATGGGGGGGCATGGAGGGCTTTTCTCGGAT  193
       |||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GTTGGGGTAGGGGCATATAAATGGGGGGGCATGGAGGGGCTTTCTCGGAT  196

seq1  AATAAAATTATGGTGCTATACATTATTCATCTAAGCCCTCAGATGAACAC  243
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATAAAATTATGGTGCTATACATTATTCATCTAAGCCCTCAGATGAACAC  245

seq1  CAGAAGTGAATCCTAATGGAAGTTAAGAACTTGACGTGATTATGGTGTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGAATCCTAATGGAAGTTAAGAACTTGACGTGATTATGGTGTGT  295

seq1  CAATAAAAAGTTGGGCAATTGTAATCTATAATCTAATAATAGGGGAGGGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAAGTTGGGCAATTGTAATCTATAATCTAATAATAGGGGAGGGT  345

seq1  ATGAGAGAAGAGAGAGACAGGGAGTGTGTGTGTGTGTGTGTGTGTGTACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAAGAGAGAGACAGGGAGTGTGTGTGTGTGTGTGTGTGTGTACT  395

seq1  CTGTACTTCCTCTTCAGTTTTTTTCTGTGAATCTAGAACTGTATAAAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTCCTCTTCAGTTTTTTTCTGTGAATCTAGAACTGTATAAAATA  445

seq1  AAGCCTATTAAAAGGGATCATGTAGTTACTTTTCTTGGGTAACATCTAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTATTAAAAGGGATCATGTAGTTACTTTTCTTGGGTAACATCTAAA  495

seq1  AACTAAGTCTTCCAACTTTTAAACCATCTCATTATCCCCACACACCTTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTCTTCCAACTTTTAAACCATCTCATTATCCCCACACACCTTTG  545

seq1  ACTGATACTATAAGCTCTATTCTATGGTAATTCTTCTTTTACTTTTAAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATACTATAAGCTCTATTCTATGGTAATTCTTCTTTTACTTTTAAAA  595

seq1  GAAGCATCCATGTGTCTGTTATAAGCTAGGCTTTTTTTGAAGCTGCAGTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCCATGTGTCTGTTATAAGCTAGGCTTTTTTTGAAGCTGCAGTA  645

seq1  ACATTGCAATCTTAATATGACACACACTTTTATTTTGCATTTTTAAGATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCAATCTTAATATGACACACACTTTTATTTTGCATTTTTAAGATA  695

seq1  TAAGTGGTCATATTTCTTTTGAAAATGAATAGTCATCATACTTGACAATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTCATATTTCTTTTGAAAATGAATAGTCATCATACTTGACAATG  745

seq1  CTTCTTCTTGCATTAGTAATACATAAAACATTTTGGACCTTACAGTCATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTGCATTAGTAATACATAAAACATTTTGGACCTTACAGTCATA  795

seq1  ATCTTGGAGTTTACAAAATAGGGCAAAATATCAAAAAGATGAAAGAGGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAGTTTACAAAATAGGGCAAAATATCAAAAAGATGAAAGAGGGA  845

seq1  TTTATGCCCAATTGGAAGTAAGAACTAAACAAACTGTTGTGTAAACACAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCCAATTGGAAGTAAGAACTAAACAAACTGTTGTGTAAACACAA  895

seq1  AAGTTAAAGCCGTCCTCGTCATCAGTACCGCTTTGAAAGGATGGGTCACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAGCCGTCCTCGTCATCAGTACCGCTTTGAAAGGATGGGTCACA  945

seq1  GTTCTGGAGTCATGAGAATGTTTCCTAGAGGGAGGGGTGATGTTTCCCAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAGTCATGAGAATGTTTCCTAGAGGGAGGGGTGATGTTTCCCAG  995

seq1  AACTCAGGCAGATAGACCCAGATAGGAAGGTGAGAATGAGTGTTCTAGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGCAGATAGACCCAGATAGGAAGGTGAGAATGAGTGTTCTAGGT  1045

seq1  TAAGGTGACTGAGGCACAGAGGCTCAGGACAGAAGAGCCTTGCGTCCTGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGACTGAGGCACAGAGGCTCAGGACAGAAGAGCCTTGCGTCCTGG  1095

seq1  ACAGATGGCATGGGAGGTATGACAAGAGGGCAGGGAGCAGGGGAGAAAGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGCATGGGAGGTATGACAAGAGGGCAGGGAGCAGGGGAGAAAGT  1145

seq1  CATATTAGGAGCCCCCAGAGAGGAAAGGTTCAGTAACCAGTGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAGGAGCCCCCAGAGAGGAAAGGTTCAGTAACCAGTGAATTC  1192

seq1: chr8_119163511_119163627
seq2: B6Ng01-177I21.g_399_475 (reverse)

seq1  CACACACATGCACACATACACACACACACACACACATGCGCACACACACA  50
                    || |||||||||||||||||||    ||||||||||
seq2  --------------CACACACACACACACACACACA----CACACACACA  32

seq1  CAT-ACATGCACATTCACACACAACACACACATGCACACACAGACACTCA  99
      ||| | |||   ||       | |  |     || |             |
seq2  CATGAAATG---AT-----GGCTAATCTTTGTTGTA------------AA  62

seq1  CATGCACACATACACAGG  117
      | ||   |||||||||||
seq2  CTTG---ACATACACAGG  77