BAC Information

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BAC

Clone NameB6Ng01-178D15
Chromosome9 (Build37)
Map Location 105,551,189 - 105,765,150
singlet/doubletdoublet
Overlap genePik3r4, E330026B02Rik, EG665033
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981
Downstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178D15.bB6Ng01-178D15.g
ACCGA005277GA005278
length9961,140
definitionB6Ng01-178D15.b B6Ng01-178D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,551,189 - 105,552,174)(105,764,114 - 105,765,150)
sequence
gaattcactcttagctcactcagggcagacctcctgcctcagccttctga
gtgctgggatgacaggcaagacatccagtccgtcctccacaacaaatctg
gaataaaacctattgccaataaacacacttttgataccttattttaaaaa
tgcactattttttccctctcaggcataaagtacatctgacattaaaaaaa
aaaaaaaaaggagaaagacaaatccattatctattgttctgtgataatca
taactctttgctttgggcagattggaagtgcactatacctgtgggtttgc
atggcttgggagaggctggcctagagagaacttgatcgtgaggaatgaag
cagacagacatctgcagtggagagagggaggcatttagcagagcacagta
acggtgttttcccatcaaggcagatgtgggctgttctgaagagagccccg
cagtcacatggttatggtagcacagggctgagggactgtgtgcaaggcca
tccgatcaaaagtctgtccctgtgtgaggacatcttttaaaagtgactga
cactgtcatagtgactctgggtcacgtaagaggttgtggtgtcttagagt
actctgcagtatttttgttgaagattgtgtgtgtgtgtgtctgtgtgtgt
acacatgtatgtgagtgcaaaggcctgaggtattagatcccctggagggg
ttgtgagccacttgatgtgggtgctgggagctggcacgttctcttcagtg
ctgagtctctccaccctactattttatatcatcgaagtgctgggatctaa
cacaggaccctcacgtggcgctgccagctttaactccttgagctacgttc
cacctttgattaaacttcctctcaactcaacttgaacaacacttaagcca
tgtgcttaatcctttggatttgtggggaagttgtacttttaaaccagaac
tcataattgggggctctggaaattatctcaggagccttggcaattt
ccggaggtaagccaggggggatctctggccgtctactttttggtgatact
ctctgaggatccgcgcaattccgctgtcgccaggtgctatcctgaatatg
gcggagtagacctgcaacccaagtgtgataatctcaccttccgtgggcct
tataatggaggctctcactacagtgccttgtgagttaagaaatttggaaa
gtggggagtcctgccctctgccaatccttgagaatgtgaactgttacctg
gaccagccttttcgggtcatactctgacgagatgaagtgaatggcttttt
cgtttcaggaagtacgatttgggttgatcaagggtattattattatgggg
tgttggtgatgagatcactggctccctgaaggcagaacatcatatgtact
atacaggtcctggttttatattacaatcaaccgtatacattgcttttatt
aaaactatctcatattgataactatataatgcaactcagattggctactg
cccaagaaaagcttacagtatcacaggttggaagaaaaaagtgacagaaa
ccatcctgcctttcaggaagctcatgtcagagctgcaggaatgagtctga
ctttgcaaagcaaagccccaagtccccaataaaactttagtgatgaaaac
aacattggtgtggaattcctaaacctctgagacaaatatgtgtctaattc
tccttctggatattagaaaattgcccttgcatccacaaaccccacgagga
ctattcctatcacgtgcatgaggtggatttctgttctggtatgtggctag
atttgcacttaatcttacacaggacttggctaaccacttttaattacttt
cctccttcatcccagactcatccccgaggtgtacagaatcgaggcaggag
agaatgagctgtctggagactctggatctcaggagcagcattttcttcct
cctagggaacagtcatggcaaccattcagaaagcactgctgatctgatgc
ggcagttgtacctgctctctcctccgggaactgatggtgaatgataggaa
gagccttgttccgcagagaccccagctccagttgacagcaaacagtagtc
ttgtagcgtcttcattgaagccctggagtgctcttgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_105551189_105552174
seq2: B6Ng01-178D15.b_43_1038

seq1  GAATTCACTCTTAGCTCACTCAGGGCAGACCTCCTGCCTCAGCCTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTAGCTCACTCAGGGCAGACCTCCTGCCTCAGCCTTCTGA  50

seq1  GTGCTGGGATGACAGGCAAGACATCCAGTCCGTCCTCCACAACAAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATGACAGGCAAGACATCCAGTCCGTCCTCCACAACAAATCTG  100

seq1  GAATAAAACCTATTGCCAATAAACACACTTTTGATACCTTATTTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACCTATTGCCAATAAACACACTTTTGATACCTTATTTTAAAAA  150

seq1  TGCACTATTTTTTCCCTCTCAGGCATAAAGTACATCTGACATTAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATTTTTTCCCTCTCAGGCATAAAGTACATCTGACATTAAAAAAA  200

seq1  AAAAAAAAAGGAGAAAGACAAATCCATTATCTATTGTTCTGTGATAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGGAGAAAGACAAATCCATTATCTATTGTTCTGTGATAATCA  250

seq1  TAACTCTTTGCTTTGGGCAGATTGGAAGTGCACTATACCTGTGGGTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTGCTTTGGGCAGATTGGAAGTGCACTATACCTGTGGGTTTGC  300

seq1  ATGGCTTGGGAGAGGCTGGCCTAGAGAGAACTTGATCGTGAGGAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGGGAGAGGCTGGCCTAGAGAGAACTTGATCGTGAGGAATGAAG  350

seq1  CAGACAGACATCTGCAGTGGAGAGAGGGAGGCATTTAGCAGAGCACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACATCTGCAGTGGAGAGAGGGAGGCATTTAGCAGAGCACAGTA  400

seq1  ACGGTGTTTTCCCATCAAGGCAGATGTGGGCTGTTCTGAAGAGAGCCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGTTTTCCCATCAAGGCAGATGTGGGCTGTTCTGAAGAGAGCCCCG  450

seq1  CAGTCACATGGTTATGGTAGCACAGGGCTGAGGGACTGTGTGCAAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACATGGTTATGGTAGCACAGGGCTGAGGGACTGTGTGCAAGGCCA  500

seq1  TCCGATCAAAAGTCTGTCCCTGTGTGAGGACATCTTTTAAAAGTGACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCAAAAGTCTGTCCCTGTGTGAGGACATCTTTTAAAAGTGACTGA  550

seq1  CACTGTCATAGTGACTCTGGGTCACGTAAGAGGTTGTGGTGTCTTAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCATAGTGACTCTGGGTCACGTAAGAGGTTGTGGTGTCTTAGAGT  600

seq1  ACTCTGCAGTATTTTTGTTGAAGATTGTGTGTGTGTGTGTCTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGTATTTTTGTTGAAGATTGTGTGTGTGTGTGTCTGTGTGTGT  650

seq1  ACACATGTATGTGAGTGCAAAGGCCTGAGGTATTAGATCCCCTGGAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTATGTGAGTGCAAAGGCCTGAGGTATTAGATCCCCTGGAGGGG  700

seq1  TTGTGAGCCACTTGATGTGGGTGCTGGGAGCTGGCACGTTCTCTTCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACTTGATGTGGGTGCTGGGAGCTGGCACGTTCTCTTCAGTG  750

seq1  CTGAGTCTCTCCACCCTACTATTTTATATCATCGAAGTGCTGGGATCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTCTCCACCCTACTATTTTATATCATCGAAGTGCTGGGATCTAA  800

seq1  CACAGGA-CCTCACGTGGCGCTGCCAGCTTTAACTCCTTGAGCTACGTTC  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACCCTCACGTGGCGCTGCCAGCTTTAACTCCTTGAGCTACGTTC  850

seq1  CACCTTTGATTAAACTT-CTCTCAACTCAAC-TGAACAACACTTAAGCCA  897
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CACCTTTGATTAAACTTCCTCTCAACTCAACTTGAACAACACTTAAGCCA  900

seq1  TGTGC-TAATCCTTTGGATTTGTGGG--AG-TGTAC-TTTAAACCAGAAC  942
      ||||| ||||||||||||||||||||  || ||||| |||||||||||||
seq2  TGTGCTTAATCCTTTGGATTTGTGGGGAAGTTGTACTTTTAAACCAGAAC  950

seq1  TCATAATT-GGGGCTCTGGAAATTATCTCAGGAG-CTCTGCAATTT  986
      |||||||| ||||||||||||||||||||||||| ||  |||||||
seq2  TCATAATTGGGGGCTCTGGAAATTATCTCAGGAGCCTTGGCAATTT  996

seq1: chr9_105764114_105765150
seq2: B6Ng01-178D15.g_108_1140 (reverse)

seq1  CAGACAAGAGCACTTCAGGGCCTCCAATGAGGACGCTAC-AGACTACCTT  49
      |||||||||||||| ||||| || |||||| |||||||| |||||||  |
seq2  CAGACAAGAGCACTCCAGGG-CTTCAATGAAGACGCTACAAGACTAC--T  47

seq1  GTTTGCTGTTCACTGGAGCTGGGGTCTCTGCGGAACAAGGCTCTTCCTTA  99
      |||||||||  |||||||||||||||||||||||||||||||||||| ||
seq2  GTTTGCTGTCAACTGGAGCTGGGGTCTCTGCGGAACAAGGCTCTTCC-TA  96

seq1  TCATTCACCATCAGTTCCCCGGAGGAGAGGAGCAGGTACAACTGCCGCAT  149
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TCATTCACCATCAGTT-CCCGGAGGAGA-GAGCAGGTACAACTGCCGCAT  144

seq1  CAGATCAGCAGTGCTTTCTGAATGGTTGCCATGACTGTTCCCTAGGAGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGCAGTGCTTTCTGAATGGTTGCCATGACTGTTCCCTAGGAGGA  194

seq1  AG-AAATGCTGCTCCTGAGATCCAGAGTCTCCAGACAGCTCATTCTCTCC  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCTGCTCCTGAGATCCAGAGTCTCCAGACAGCTCATTCTCTCC  244

seq1  TGCCTCGATTCTGTACACCTCGGGGATGAGTCTGGGATGAAGGAGGAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGATTCTGTACACCTCGGGGATGAGTCTGGGATGAAGGAGGAAAG  294

seq1  TAATT-AAAGTGGTTAGCCAAGTCCTGTGTAAGATTAAGTGCAAATCTAG  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAGTGGTTAGCCAAGTCCTGTGTAAGATTAAGTGCAAATCTAG  344

seq1  CCACATACCAGAACAGAAATCCACCTCATGCACGTGATAGGAATAGTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACCAGAACAGAAATCCACCTCATGCACGTGATAGGAATAGTCCT  394

seq1  CGTGGGGTTTGTGGATGCAAGGGCAATTTTCTAATATCCAGAAGGAGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGTTTGTGGATGCAAGGGCAATTTTCTAATATCCAGAAGGAGAAT  444

seq1  TAGACACATATTTGTCTCAGAGGTTTAGGAATTCCACACCAATGTTGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACATATTTGTCTCAGAGGTTTAGGAATTCCACACCAATGTTGTTT  494

seq1  TCATCACTAAAGTTTTATTGGGGACTTGGGGCTTTGCTTTGCAAAGTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTAAAGTTTTATTGGGGACTTGGGGCTTTGCTTTGCAAAGTCAG  544

seq1  ACTCATTCCTGCAGCTCTGACATGAGCTTCCTGAAAGGCAGGATGGTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCCTGCAGCTCTGACATGAGCTTCCTGAAAGGCAGGATGGTTTC  594

seq1  TGTCACTTTTTTCTTCCAACCTGTGATACTGTAAGCTTTTCTTGGGCAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTTTTCTTCCAACCTGTGATACTGTAAGCTTTTCTTGGGCAGT  644

seq1  AGCCAATCTGAGTTGCATTATATAGTTATCAATATGAGATAGTTTTAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCTGAGTTGCATTATATAGTTATCAATATGAGATAGTTTTAATA  694

seq1  AAAGCAATGTATACGGTTGATTGTAATATAAAATGTGGACCTGTATAGTA  747
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  AAAGCAATGTATACGGTTGATTGTAATATAAAACCAGGACCTGTATAGTA  744

seq1  CAGATTGTGTTCTGCCTTCTGCTAGCCAGTGATATCATCACCAACACAAC  797
      || ||  |||||||||||| |  |||||||||| |||||||||||||  |
seq2  CATATGATGTTCTGCCTTCAGGGAGCCAGTGATCTCATCACCAACACCCC  794

seq1  ATTTTAAAAAAACCCTTGCTCAGCCCAAATCCTACATCCTGAAATGAAAA  847
      ||  ||| || ||||||| ||| |||||||| ||| |||||||| |||||
seq2  ATAATAATAATACCCTTGATCAACCCAAATCGTACTTCCTGAAACGAAAA  844

seq1  TGCCATTCACTTCATATCCTTAGATTATGACCCACTAATGCTGGACCAGC  897
       |||||||||||||| || | ||| ||||||||   || ||||| |||| 
seq2  AGCCATTCACTTCATCTCGTCAGAGTATGACCCGAAAAGGCTGGTCCAGG  894

seq1  TATCACTTCACATTCTCAAGGATTGTTTCCTGGGCAGTACTCCCCACATC  947
      || || |||||||||||||||||||      |||||| ||||||||| | 
seq2  TAACAGTTCACATTCTCAAGGATTG-GCAGAGGGCAGGACTCCCCACTTT  943

seq1  TGAAATTTCTTAACTCACAATGCACTGTCTTCTGTGCCAGCATTCTCTGG  997
        |||||||||||||||||| |||||||  |  | |||  |||| |  ||
seq2  CCAAATTTCTTAACTCACAAGGCACTGTAGTGAGAGCCTCCATTATAAGG  993

seq1  GCCAGGGAAGGTGAGATTATCACACTTGGCTTGCAGGTCT  1037
       ||| |||||||||||||||||||||||| ||||||||||
seq2  CCCACGGAAGGTGAGATTATCACACTTGGGTTGCAGGTCT  1033