BAC Information

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BAC

Clone NameB6Ng01-178I15
Chromosome6 (Build37)9 (Build37)
Map Location 86,767,010 - 86,767,07872,637,996 - 72,639,195
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4
Downstream gene2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178I15.bB6Ng01-178I15.g
ACCGA005499GA005500
length831,202
definitionB6Ng01-178I15.b B6Ng01-178I15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,767,010 - 86,767,078)(72,637,996 - 72,639,195)
sequence
caggacatccagggctatacagagaaaccctgtctcgaaaaaccaaaaga
agaagaagaagaagaaggaggaggaggaggagg
gaattcagtgtgagtggggccagagagatgacttagtggataaaggcagt
tgctgccaaaccggatgacttgagtttgatccctgggacctacatggtgg
gaggaaagaactgactcccacaagcagtcctttgacttccagatgtgcac
catggctatgctcgtgaacacacatatgacacacatgcacaaaacggtac
aataaaatgcaattttaaaaagtttgtttgtttgtgttttaaaaagcgtt
tagtattaagtgtctaagctctgctacaccatgtgcgcttagtgtgtagt
tctatctgttctctctggcatgcgtgacgtggtactcggacgaacctgat
acctcactaccacactgtgcactatgttttgttttattttgttttataga
gacaaactatgctatatgttctcttctgcgcactgaaagcacttctgaca
gacagcctttgagcagagctccagctccctgcccacagatacctaaactg
actcggtgacattccttcctcattaatctccctccatcaattgggaaaag
aagtcagcaggatgaaacttcgaaacttttctagttttttctacctcttt
ctctccccctttggaaagcctgctggaatttcgactgggatgttttccag
gctcctggctgtagagacctcagctcgctaaaaccacagttgtttgtgtg
ctgccgccccacaggaggctacaatgatgaaaacccagaatggcctgtct
tccattccctcacccctgaggaatccggagaccagcagaggatgtgccag
gggcacatctagctccccaccctctgcctccattttaggagaagatgaag
accctgttaatgctcctggcaccacacacatctctctggatgtgctgaat
agacaagaaccaaggaccctgagtaggaatttttagaatttgttttaatc
ttgattcaccaagcaatcccatggattaaactctcattttattccttacc
ccaccagaaaaaatccgtagcttctaatttcttattttacagaagaaaac
tattgagagctagaacggttgttacctgtatatagattactttcctactt
acctttcttacactgttattaatgttaagttgatcccttgagactcttct
ggagcttccttgagacttcggctcacggatgtggctaagtacaatggtac
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86767010_86767078
seq2: B6Ng01-178I15.b_47_129 (reverse)

seq1  CCTCCTCCTCCTCCTCCTTCTTCTTC--------------GTTTTTTGAG  36
      ||||||||||||||||||||||||||              |||||| |||
seq2  CCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTTTGGTTTTTCGAG  50

seq1  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  69
      ||||||||||||||| ||||||||| |||||||
seq2  ACAGGGTTTCTCTGTATAGCCCTGGATGTCCTG  83

seq1: chr9_72637996_72639195
seq2: B6Ng01-178I15.g_74_1275 (reverse)

seq1  TTGTACATTTGTACTTTAGCCACATCCCTGTTTAGGCAGAAGTTTTTCAA  50
      ||||||  |||||| |||||||||||| ||     || ||||  | ||||
seq2  TTGTACCATTGTAC-TTAGCCACATCCGTG----AGCCGAAG--TCTCAA  43

seq1  AGGGAAACTTCAGAAGA--CTCTAGGGATCAAATTTAACAATTAAATAAC  98
        |||| || |||||||  ||| ||||||| || ||||||  | ||||||
seq2  --GGAAGCTCCAGAAGAGTCTCAAGGGATC-AACTTAACA--TTAATAAC  88

seq1  AGTTGTAAGAAAGTAAGGTAAGAAAGTAAT-TCTATACAGGTAACAACCT  147
      || ||||||||||  | ||| ||||||||| | |||||||||||||||| 
seq2  AG-TGTAAGAAAGGTAAGTAGGAAAGTAATCTATATACAGGTAACAACCG  137

seq1  TTCTAGCTCTCAATAGTTTTC-TCTGTAAA--TAGAAATTAGAAGCTACG  194
      ||||||||||||||||||||| ||||||||   |||||||||||||||||
seq2  TTCTAGCTCTCAATAGTTTTCTTCTGTAAAATAAGAAATTAGAAGCTACG  187

seq1  --ATTTTTCTG--TGGGTAA-GAAT-AAATGAGAGTTTTATTCAT-GGAT  237
         ||||||||   |||||| |||| |||||||||||| || ||| ||||
seq2  GATTTTTTCTGGTGGGGTAAGGAATAAAATGAGAGTTTAATCCATGGGAT  237

seq1  TGCTTGTTGAATC-AGATTTAAAC-AATTCT-AAAATTCCTACTCAGGGT  284
      |||||| |||||| ||||| |||| |||||| ||||||||||||||||||
seq2  TGCTTGGTGAATCAAGATTAAAACAAATTCTAAAAATTCCTACTCAGGGT  287

seq1  CCTTGGTTCTTGTCTATTCAGCACATCCAGAGAGATGTGTGTGGTGCCAG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTCTTGTCTATTCAGCACATCCAGAGAGATGTGTGTGGTGCCAG  337

seq1  GAGCATTAACAGGGTCTTCATCTTCTCCTAAAATGGAGGCAGAGGGTGGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTAACAGGGTCTTCATCTTCTCCTAAAATGGAGGCAGAGGGTGGG  387

seq1  GAGCTAGATGTGCCCCTGGCACATCCTTCTGCTGGTCTCCGGATTCCTCA  434
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGCTAGATGTGCCCCTGGCACATCC-TCTGCTGGTCTCCGGATTCCTCA  436

seq1  GGGGTGAGGGAATGGAAGACAGGCCATTCTGGGTTTTCATCATTGTAGCC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGGGAATGGAAGACAGGCCATTCTGGGTTTTCATCATTGTAGCC  486

seq1  TCCTGTGGGGCGGCAGCACACAAACAACTGTGGTTTTAGCGAGCTGAGGT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGGGGCGGCAGCACACAAACAACTGTGGTTTTAGCGAGCTGAGGT  536

seq1  CTCTACAGCCAGGAGCCTGGAAAACATCCCAGTCGAAATTCCAGCAGGCT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGCCAGGAGCCTGGAAAACATCCCAGTCGAAATTCCAGCAGGCT  586

seq1  TTCCAAAGGGGGAGAGAAAGAGGTAGAAAAAACTAGAAAAGTTTCGAAGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGGGGGAGAGAAAGAGGTAGAAAAAACTAGAAAAGTTTCGAAGT  636

seq1  TTCATCCTGCTGACTTCTTTTCCCAATTGATGGAGGGAGATTAATGAGGA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTGCTGACTTCTTTTCCCAATTGATGGAGGGAGATTAATGAGGA  686

seq1  AGGAATGTCACCGAGTCAGTTTAGGTATCTGTGGGCAGGGAGCTGGAGCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTCACCGAGTCAGTTTAGGTATCTGTGGGCAGGGAGCTGGAGCT  736

seq1  CTGCTCAAAGGCTGTCTGTCAGAAGTGCTTTCAGTGCGCAGAAGAGAACA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAAAGGCTGTCTGTCAGAAGTGCTTTCAGTGCGCAGAAGAGAACA  786

seq1  TATAGCATAGTTTGTCTCTATAAAACAAAATAAAACAAAACATAGTGCAC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATAGTTTGTCTCTATAAAACAAAATAAAACAAAACATAGTGCAC  836

seq1  AGTGTGGTAGTGAGGTATCAGGTTCGTCCGAGTACCACGTCACGCATGCC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTAGTGAGGTATCAGGTTCGTCCGAGTACCACGTCACGCATGCC  886

seq1  AGAGAGAACAGATAGAACTACACACTAAGCGCACATGGTGTAGCAGAGCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAACAGATAGAACTACACACTAAGCGCACATGGTGTAGCAGAGCT  936

seq1  TAGACACTTAATACTAAACGCTTTTTAAAACACAAACAAACAAACTTTTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTTAATACTAAACGCTTTTTAAAACACAAACAAACAAACTTTTT  986

seq1  AAAATTGCATTTTATTGTACCGTTTTGTGCATGTGTGTCATATGTGTGTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCATTTTATTGTACCGTTTTGTGCATGTGTGTCATATGTGTGTT  1036

seq1  CACGAGCATAGCCATGGTGCACATCTGGAAGTCAAAGGACTGCTTGTGGG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCATAGCCATGGTGCACATCTGGAAGTCAAAGGACTGCTTGTGGG  1086

seq1  AGTCAGTTCTTTCCTCCCACCATGTAGGTCCCAGGGATCAAACTCAAGTC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCTTTCCTCCCACCATGTAGGTCCCAGGGATCAAACTCAAGTC  1136

seq1  ATCCGGTTTGGCAGCAACTGCCTTTATCCACTAAGTCATCTCTCTGGCCC  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGTTTGGCAGCAACTGCCTTTATCCACTAAGTCATCTCTCTGGCCC  1186

seq1  CACTCACACTGAATTC  1200
      ||||||||||||||||
seq2  CACTCACACTGAATTC  1202