BAC Information

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BAC

Clone NameB6Ng01-178J02
Chromosome9 (Build37)
Map Location 41,911,341 - 41,912,325
singlet/doubletsinglet
Overlap geneSorl1
Upstream gene2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik
Downstream geneSc5d, Tecta, Tbcel, Grik4, Arhgef12, LOC545339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178J02.bB6Ng01-178J02.g
ACCGA005521GA005522
length1,0011,185
definitionB6Ng01-178J02.b B6Ng01-178J02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaacgggtcattcaacatgtcattgggggagtggggtggaaca
tcatgaaaatggaggtcctaccgtggtcttagaatcaccagaaagaccca
tttttttgtgtgtgtgtgtgtgtgtgtgtgtgccaagcactgaaaggtca
catcttagaccctctcagtcttgagtgaaccgggagtgtttgaccaccca
catatcactagtctgtccaactcagctcttattttgtggaaatgtttatg
tgttttgaagaacttattgtcattattctacagtgacatatgagagaaga
ttaaatggaaaggaaacttaatgtccagagttaataagtagagatggcag
aatgttcttctgtccgtgtacaaactgcattaaagagttggctgccaaag
ccgaaatgttcggatgtgaaaagttagtgcaaaaataaacggtgactcag
aggccgagtcggtggcactggcaagggagcatccaaatgttccttaaaga
ggactggaagcatgggtcagaaaggccccatctgaggggatagagcttgt
gtgcaggtaaggcctgcctgaagggccgagaatggctgaggtcaggagta
ctctgtatgtaaacaaggctgggcctggacactgggatcccagatggctt
acttataagcaaaagccaaaaccaaaccaaaccaaaccacctgtcatcag
taattcatttagctgagggtggtctcctgcaaaggtgatcttgttccctg
caatgagcagagaactaccaacataaggatgcgctttcagccggcctctg
cccagttctttacttttgctttctggtgatgtgtttcaaaaaagtacttt
gtgtactgcttgtacacaagggaatgaatactagcacctcaaggggctgc
cacagggggaatgtgagtccaggcctaaccctgggcttacagaaagagtt
tccttattcaaaaaaacaatctattacctcccattctcaataactaacaa
t
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacactagttagaatggctaagataaaaaaattcaggtgacag
cagatgctggagaggatgtggagaaagaggaacattcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctt
agaaaattggacatagtactaccggaggatcccacaatacttctcctggg
catatatccagaagatgttccaaccggtaagaaggacacatactccacta
tgttcttagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaattaatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aagaactcacacaatatgtactcactgataagtggatattagcccagaaa
cttagaatacccaagatataagatacaatttgctaaacacatgaaactca
agaagaacgaagaccaaagtgtggacactttgccccttcttagaattggg
aacaaaactcccatggaaggagttacagagacacagtttggagctgagac
gaaaggatggaccatctagagactgccatattcggggatccatctcataa
tcagcctccaaacgctgacaccattgcatacactagcaagattctgctga
aaggacccagatatagctgtctcttgtgagactatgccggagcctagcaa
cacagaagtggatgctcacagtcagctatggatggatcacagggcccaaa
atgagaggtagagaagtaaccaaggagctaaaagatctgcaccctataga
tgacacatatgactaccagtactcccccagagctcgtgtctctagctgca
tatgttatcagagaatgctagtcagcattcaagtgaaaggaatgccattg
tcatgcaaacctttaactgcctagtacagggacgctaggtccagatgtgc
aagtgtctgccttagctaaaatgctcgctgctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41911341_41912325
seq2: B6Ng01-178J02.b_48_1048 (reverse)

seq1  ATTGTTTGTTATTGGGAATGGGAGGTACTGTATTTGTTTTTTGAATA--G  48
      |||||| ||||||| |||||||||||| |  |||  |||||||||||  |
seq2  ATTGTTAGTTATTGAGAATGGGAGGTAATAGATTGTTTTTTTGAATAAGG  50

seq1  GAACTCATTCTGT-AGCCCA-GGTTAGGCTTGAACTCACAATCCCCCTGT  96
       ||||| |||||| |||||| |||||||| || ||||||| |||||||||
seq2  AAACTCTTTCTGTAAGCCCAGGGTTAGGCCTGGACTCACATTCCCCCTGT  100

seq1  CGCAGCCCCTTGA-GTGCTAGTA-TCATTACCTTGTGTAC-AGCAGTACA  143
       |||||||||||| ||||||||| ||||| |||||||||| |||||||||
seq2  GGCAGCCCCTTGAGGTGCTAGTATTCATTCCCTTGTGTACAAGCAGTACA  150

seq1  C-AAGTAC-TTTCTGAAACACATCACCAGAAAGCAAAAGTAAAGAACTGG  191
      | |||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACTTTTTTGAAACACATCACCAGAAAGCAAAAGTAAAGAACTGG  200

seq1  GCAGAGGCCGGCTG-AAGCGCATCC-TATGTT-GTAGTTCTTCTGCTCAT  238
      |||||||||||||| |||||||||| |||||| ||||||| |||||||||
seq2  GCAGAGGCCGGCTGAAAGCGCATCCTTATGTTGGTAGTTC-TCTGCTCAT  249

seq1  TGCA-GGAAC-AGATCACCTTTGCAGGAGACCACCCTCAGCT-AATG-AT  284
      |||| ||||| ||||||||||||||||||||||||||||||| |||| ||
seq2  TGCAGGGAACAAGATCACCTTTGCAGGAGACCACCCTCAGCTAAATGAAT  299

seq1  TACTGATGACAGGTGGTTTGGTTTGGTTTGG-TTTGGCTTTTGCTTATAA  333
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACTGATGACAGGTGGTTTGGTTTGGTTTGGTTTTGGCTTTTGCTTATAA  349

seq1  GTAAGCCATCTGGGATCCCAGTGTCCAGGCCCAGCCTTGTTTACATACAG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCATCTGGGATCCCAGTGTCCAGGCCCAGCCTTGTTTACATACAG  399

seq1  AGTACTCCTGACCTCAGCCATTCTCGGCCCTTCAGGCAGGCCTTACCTGC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCCTGACCTCAGCCATTCTCGGCCCTTCAGGCAGGCCTTACCTGC  449

seq1  ACACAAGCTCTATCCCCTCAGATGGGGCCTTTCTGACCCATGCTTCCAGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCTCTATCCCCTCAGATGGGGCCTTTCTGACCCATGCTTCCAGT  499

seq1  CCTCTTTAAGGAACATTTGGATGCTCCCTTGCCAGTGCCACCGACTCGGC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTAAGGAACATTTGGATGCTCCCTTGCCAGTGCCACCGACTCGGC  549

seq1  CTCTGAGTCACCGTTTATTTTTGCACTAACTTTTCACATCCGAACATTTC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTCACCGTTTATTTTTGCACTAACTTTTCACATCCGAACATTTC  599

seq1  GGCTTTGGCAGCCAACTCTTTAATGCAGTTTGTACACGGACAGAAGAACA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGCAGCCAACTCTTTAATGCAGTTTGTACACGGACAGAAGAACA  649

seq1  TTCTGCCATCTCTACTTATTAACTCTGGACATTAAGTTTCCTTTCCATTT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATCTCTACTTATTAACTCTGGACATTAAGTTTCCTTTCCATTT  699

seq1  AATCTTCTCTCATATGTCACTGTAGAATAATGACAATAAGTTCTTCAAAA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTCTCATATGTCACTGTAGAATAATGACAATAAGTTCTTCAAAA  749

seq1  CACATAAACATTTCCACAAAATAAGAGCTGAGTTGGACAGACTAGTGATA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAACATTTCCACAAAATAAGAGCTGAGTTGGACAGACTAGTGATA  799

seq1  TGTGGGTGGTCAAACACTCCCGGTTCACTCAAGACTGAGAGGGTCTAAGA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGTCAAACACTCCCGGTTCACTCAAGACTGAGAGGGTCTAAGA  849

seq1  TGTGACCTTTCAGTGCTTGGCACACACACACACACACACACACACAAAAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTTTCAGTGCTTGGCACACACACACACACACACACACACAAAAA  899

seq1  AATGGGTCTTTCTGGTGATTCTAAGACCACGGTAGGACCTCCATTTTCAT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTCTTTCTGGTGATTCTAAGACCACGGTAGGACCTCCATTTTCAT  949

seq1  GATGTTCCACCCCACTCCCCCAATGACATGTTGAATGACCCGTTGTGAAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCACCCCACTCCCCCAATGACATGTTGAATGACCCGTTGTGAAT  999

seq1  TC  985
      ||
seq2  TC  1001