BAC Information

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BAC

Clone NameB6Ng01-178K20
Chromosome9 (Build37)
Map Location 54,834,624 - 54,835,750
singlet/doubletsinglet
Overlap geneChrna5
Upstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4
Downstream geneChrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K20.bB6Ng01-178K20.g
ACCGA005596GA005597
length1,1171,197
definitionB6Ng01-178K20.b B6Ng01-178K20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatctatttttactggcatccccttccttctcttcagtcctgc
gttacaagaaaagagcatgaggtcaaaattaaaggattggagagatgatg
ccatgttgttttaaatcataatagacagggctggagtgctcagtggttaa
gagcactatgattgcttttccagaggtcctgagttcaattcccagaaacc
acatggtggctcacaaccatctgcaaaggagtctgatgccctcttctgtt
gtgtctgaagagagtaatggtgtaatcatatacacaaaataaataactac
atcttttaaaaaataaatcataaagaaaacatttaaatgaaaatcatagc
caggcagtggtggcaaacatctttagtcccccagcacttgggaggcagag
gcaggcagatctctaagtttggggccagcctgacttacagagtgagttcc
agggcagccggggctacacaaaaaaccttgtcctaataaacatatttttc
ccagaaacctctgtttgagtacttgctgctcttctggaagacctaagatt
gactcccaacacccacactggaaggcttacaactgcccatgactccatct
ccacagagcctgacacccctggcctctttaggcacccacactcatgcaca
tgcacgcatgcacccatgcacacacacacacacacgcataagtaaaaggt
ttaaaaaatggttttccatcacactgtttccactgttccagagaaaaatc
cctaaagaaacaaattctagccgggcggtggtggcgcgcgcctttaatct
cagcacttgggaggcagaggtaggtggatttctgagtgaggccagcctgg
tctacagagtgagttccaggatagccaggggctacacagagaaactctgt
ctcaaaaaacaacaacaaacaacaaacaacggacaagaaacaaattctaa
cttcttcctaaagtattctaagttcaatatgtctgcatctacttgctact
attttaaactaaaatatcatctagagaggttaatcccaactattacaaga
gaaaaacatgcctacaaaagaaaaatgatattgctgaaattattgtacta
aaacctcggtcttattt
gaattccatgatcgtgggcccactattgtacttttctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaatactgtggcgatagataag
gcatcctgtgagtccatggatggaggttttagcaggggcattatgtgcag
gaaaggcaaattcataaccagaatacatatctactccagttagaacaaaa
cgctgtccttttcatggaagacgtggtccaatgtagttaacctgccacca
ggttgctggctggtcaccttggaggaatggtgtcatatctggggctcagt
gttggtctctgctgttggcagatccggcatttagcagcagctgtagccag
gtcagtgttggtgagtggaaaaccatgttgttgagcccaagcataaccct
tacctctgttaccatggccactttgttcacatgcccattgggcaatgaca
gggatggctggggaaagaggctgactgtccacaaaacaggtcatcttatc
cacttgattattgaactcctcctcggctgaagtcaccttttggtgagcat
ttacatgggacacaaatatcttcacatcctttgctcattcggagagatct
ttctacatactttttccccagatgtctttctcactaattttacaatcgtg
atctttccaaggccctgaccatccagccaatctgttggctgacagtctat
aagtcagtgaacaaatcaaacatctggccatttcttcttccaaacaaact
gtaataccatgtgtattgcttgaagttctgcccattgtggagatgtcccc
tcaccagtatctttgagagttgtctcagaaaggagctgtaatgttgcgac
tgtccgcttctgagtaacatgcagaaccatcaggaagccaggtcctagtc
tcatcttcctcaggcaacctatcatagggaacacccaatgagactgtagg
cgcatgcttagcagcagacagcattgaacaggggtagaaaccatagcatt
tggacacttcatgtaacgttgcttgtggtgtcagggacctgctggtctga
tcaatttaatacaactccctttggaatactgattaaccgctaggcagtcc
ttgcctatgaactgctcggtcagaaaatccgtctcataatggcagtcagt
acatgtaacctggaatgctcgatgtgcttgtataaaatacgatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54834624_54835750
seq2: B6Ng01-178K20.b_46_1162 (reverse)

seq1  AAATTAGACCGAGTTTTTAGTACAATAATTTCAGC-ATATCATTTTTCTT  49
      |||| |||||||| ||||||||||||||||||||| ||||||||||||||
seq2  AAATAAGACCGAGGTTTTAGTACAATAATTTCAGCAATATCATTTTTCTT  50

seq1  TTGGTAGCATTGTTTTTCTCTTGTAATAGTTGGGATTAAACTCTTCTAGA  99
      || ||||   ||||||||||||||||||||||||||||| ||| ||||||
seq2  TT-GTAGGCATGTTTTTCTCTTGTAATAGTTGGGATTAACCTC-TCTAGA  98

seq1  TGATATTTTTAGTTTAAAATTAAGTAAGCAAGTAGATGCAGACATATTGA  149
      ||||| ||||||||||||||  ||| ||||||||||||||||||||||||
seq2  TGATA-TTTTAGTTTAAAAT--AGT-AGCAAGTAGATGCAGACATATTGA  144

seq1  ACTTAGAATACTTTAGGAAGAAGTTAGAATTTGTTTCTTTGTCTGTTTGT  199
      ||||||||||||||||||||||||||||||||||||| ||||| | ||||
seq2  ACTTAGAATACTTTAGGAAGAAGTTAGAATTTGTTTC-TTGTCCG-TTGT  192

seq1  TTGTTTGTTTGTTTGTTTGTTTTTTTGAGACAGAGTTTCTCTGTGTAG-C  248
      ||| ||||||| |||||   |||||||||||||||||||||||||||| |
seq2  TTG-TTGTTTG-TTGTT--GTTTTTTGAGACAGAGTTTCTCTGTGTAGCC  238

seq1  CCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCACTCAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCACTCAGAA  288

seq1  ATCCACCTACCTCTGCCTCCCAAGTGCTGAGATTAAAGGCGCGCGCCACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTACCTCTGCCTCCCAAGTGCTGAGATTAAAGGCGCGCGCCACC  338

seq1  ACCGCCCGGCTAGAATTTGTTTCTTTAGGGATTTTTCTCTGGAACAGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCCGGCTAGAATTTGTTTCTTTAGGGATTTTTCTCTGGAACAGTGG  388

seq1  AAACAGTGTGATGGAAAACCATTTTTTAAACCTTTTACTTATGCGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTGATGGAAAACCATTTTTTAAACCTTTTACTTATGCGTGTGT  438

seq1  GTGTGTGTGTGCATGGGTGCATGCGTGCATGTGCATGAGTGTGGGTGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCATGGGTGCATGCGTGCATGTGCATGAGTGTGGGTGCCT  488

seq1  AAAGAGGCCAGGGGTGTCAGGCTCTGTGGAGATGGAGTCATGGGCAGTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCAGGGGTGTCAGGCTCTGTGGAGATGGAGTCATGGGCAGTTG  538

seq1  TAAGCCTTCCAGTGTGGGTGTTGGGAGTCAATCTTAGGTCTTCCAGAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTCCAGTGTGGGTGTTGGGAGTCAATCTTAGGTCTTCCAGAAGA  588

seq1  GCAGCAAGTACTCAAACAGAGGTTTCTGGGAAAAATATGTTTATTAGGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGTACTCAAACAGAGGTTTCTGGGAAAAATATGTTTATTAGGAC  638

seq1  AAGGTTTTTTGTGTAGCCCCGGCTGCCCTGGAACTCACTCTGTAAGTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTTGTGTAGCCCCGGCTGCCCTGGAACTCACTCTGTAAGTCAG  688

seq1  GCTGGCCCCAAACTTAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCCAAACTTAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGG  738

seq1  GGACTAAAGATGTTTGCCACCACTGCCTGGCTATGATTTTCATTTAAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAAGATGTTTGCCACCACTGCCTGGCTATGATTTTCATTTAAATG  788

seq1  TTTTCTTTATGATTTATTTTTTAAAAGATGTAGTTATTTATTTTGTGTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATGATTTATTTTTTAAAAGATGTAGTTATTTATTTTGTGTAT  838

seq1  ATGATTACACCATTACTCTCTTCAGACACAACAGAAGAGGGCATCAGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACACCATTACTCTCTTCAGACACAACAGAAGAGGGCATCAGACT  888

seq1  CCTTTGCAGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATTGAACTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATTGAACTCA  938

seq1  GGACCTCTGGAAAAGCAATCATAGTGCTCTTAACCACTGAGCACTCCAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTGGAAAAGCAATCATAGTGCTCTTAACCACTGAGCACTCCAGC  988

seq1  CCTGTCTATTATGATTTAAAACAACATGGCATCATCTCTCCAATCCTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTATTATGATTTAAAACAACATGGCATCATCTCTCCAATCCTTTA  1038

seq1  ATTTTGACCTCATGCTCTTTTCTTGTAACGCAGGACTGAAGAGAAGGAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACCTCATGCTCTTTTCTTGTAACGCAGGACTGAAGAGAAGGAAG  1088

seq1  GGGATGCCAGTAAAAATAGATGTGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  GGGATGCCAGTAAAAATAGATGTGAATTC  1117