BAC Information

Click to search

BAC

Clone NameB6Ng01-179I05
Chromosome9 (Build37)
Map Location 68,486,911 - 68,642,737
singlet/doubletdoublet
Overlap geneRora, 9530091C08Rik
Upstream geneLOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179I05.bB6Ng01-179I05.g
ACCGA006212GA006213
length5711,172
definitionB6Ng01-179I05.b B6Ng01-179I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,486,911 - 68,487,487)(68,641,589 - 68,642,737)
sequence
tcaccacagtacttggacaactgaggttaggggatggggacagggagcag
tcttcttactcttctcttctcccatctccttcgggctgctgtgtcagtag
aggataatccaagggcaatgagggagttacactaagcacagccctgggat
gcaagcctttcctgtgggtgagcatcacttctctagggaacttcttggct
caggagccttcctctgctgcctgttcctgttctgctgggattcggaatac
caggggcccttcctagactgtatttccagggatttaatgcataatgtatc
cctcctgggtctgtctctcttcagctataaatttcagtgtaatttttcct
tctggtaatgtcttgctttcggttatttattaatttattatgtgaacaat
tagcagccactatgcccaaaatattattttagttcattacattgttagat
atgtctgaacataggtcacatatggccaagaacagctataattgtagcct
catgcacacactgtaaagttactttaaaaacgctctctctctctctctct
ctctctctctctctctctctc

gaattctctctatagctccttccacgggcactgaatggctcatttatgtc
attatgagatttcaaggcacagcacaacctttccaacctcacttctgtgt
caccatcaggcaggtgaagcggggacaagcacagctgactctgctccact
gagagagccaccaggatggttcctccccaggctcctcaacacacacaagc
tctgttcacctcacctgccctcaacaggtgaggcaggggcacactttccc
tgggagggaagcgaagcccacttgtgtcacactgagaaccacacagcaga
tgccgaacctccttcaagaaatgtgagtcagtgttgcaaacagcagaagg
aagacgccgagaatgttttgctcttggaggcgcccctgctttctctagga
tggaatgaatgctcctaaggactatggactatgcataaactgacccccga
gtctgcgaaatgatctccagatctgccctctttccagatgagagaaaatc
acacacacacacacacacacacacacacacaatgcacacttgcatgcata
tccgtgtgtgtatgtaaacacacatacacacagaggaaagggaaacttca
catctacaagtggacaatctgacacaaagttaaagtcgtctctctgcggc
atgtattcacaggtcatccttggggtcctctgctgaaatgtttccataca
atagcctatggagcccccaaaatatgtaatgaaaaatctcaatgaaaggt
tgtcattggccaagagattctccctgaatgtttcaaagacctttctttgt
ggtagagggcagatccatcgagagccaaacacataactgcaagctcgaga
ttatggattgcatggctagcttatctctgcagtccatccctccaaagatt
aggcagggtgctgggggaatctcgggttacatgttgatgggagaaacata
gcttttccaaaggagagtggcaaaaggtcccctgtcaccataaccaatga
ttcattcggttacaaataacaatgtgccatgcaatggcaaactttagtca
caatggccttggtggctggaaatttacttccactccaagccaattgttct
aagttatcagtagcactcagggaagcctgggcccaatcctctttcctcca
cttgaactttctatccattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68486911_68487487
seq2: B6Ng01-179I05.b_42_618

seq1  GAATTCTCACCACAGTACTTGGACAACTGAGGTTAGGGGATGGGGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCACAGTACTTGGACAACTGAGGTTAGGGGATGGGGACAGG  50

seq1  GAGCAGTCTTCTTACTCTTCTCTTCTCCCATCTCCTTCGGGCTGCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCTTCTTACTCTTCTCTTCTCCCATCTCCTTCGGGCTGCTGTGT  100

seq1  CAGTAGAGGATAATCCAAGGGCAATGAGGGAGTTACACTAAGCACAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGGATAATCCAAGGGCAATGAGGGAGTTACACTAAGCACAGCCC  150

seq1  TGGGATGCAAGCCTTTCCTGTGGGTGAGCATCACTTCTCTAGGGAACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCAAGCCTTTCCTGTGGGTGAGCATCACTTCTCTAGGGAACTTC  200

seq1  TTGGCTCAGGAGCCTTCCTCTGCTGCCTGTTCCTGTTCTGCTGGGATTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCAGGAGCCTTCCTCTGCTGCCTGTTCCTGTTCTGCTGGGATTCG  250

seq1  GAATACCAGGGGCCCTTCCTAGACTGTATTTCCAGGGATTTAATGCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCAGGGGCCCTTCCTAGACTGTATTTCCAGGGATTTAATGCATAA  300

seq1  TGTATCCCTCCTGGGTCTGTCTCTCTTCAGCTATAAATTTCAGTGTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCTCCTGGGTCTGTCTCTCTTCAGCTATAAATTTCAGTGTAATT  350

seq1  TTTCCTTCTGGTAATGTCTTGCTTTCGGTTATTTATTAATTTATTATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTGGTAATGTCTTGCTTTCGGTTATTTATTAATTTATTATGTG  400

seq1  AACAATTAGCAGCCACTATGCCCAAAATATTATTTTAGTTCATTACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAGCAGCCACTATGCCCAAAATATTATTTTAGTTCATTACATTG  450

seq1  TTAGATATGTCTGAACATAGGTCACATATGGCCAAGAACAGCTATAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATGTCTGAACATAGGTCACATATGGCCAAGAACAGCTATAATTG  500

seq1  TAGCCTCATGCACACACTGTAAAGTTACTTTAAAAACGCTCTCTCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCATGCACACACTGTAAAGTTACTTTAAAAACGCTCTCTCTCTCT  550

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTC  577
      |||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTC  577


seq1: chr9_68641589_68642737
seq2: B6Ng01-179I05.g_67_1238 (reverse)

seq1  TTCAATGGAAAGAA--GTCCAGTGGAG--AAGAGGATGGGGCC--AGCCT  44
      ||||||||| ||||   || |||||||  |||||||| |||||   || |
seq2  TTCAATGGATAGAAAGTTCAAGTGGAGGAAAGAGGATTGGGCCCAGGCTT  50

seq1  CCCTGA-TGCT-CTGAT-ACTTAG-ACATGGGGCTTTGGAGTGG-AGTAA  89
      |||||| |||| ||||| |||||| |||   ||| ||||||||| |||||
seq2  CCCTGAGTGCTACTGATAACTTAGAACAATTGGC-TTGGAGTGGAAGTAA  99

seq1  A-TTCCAGCCACCAA-GCCA-TGTGACTAAAGTTTGCCATTGCATGGCAC  136
      | ||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  ATTTCCAGCCACCAAGGCCATTGTGACTAAAGTTTGCCATTGCATGGCAC  149

seq1  AT--GTATTTGTACCCGAATG-ATCATTGG-TATGGTGACAGGGAACCTT  182
      ||   |||||||| ||||||| |||||||| ||||||||||||| |||||
seq2  ATTGTTATTTGTAACCGAATGAATCATTGGTTATGGTGACAGGGGACCTT  199

seq1  TTGCCACTCTCCTTTGG-AAAGCTATG-TTCT-CCATCAACATGTAA-CC  228
      ||||||||||||||||| ||||||||| |||| |||||||||||||| ||
seq2  TTGCCACTCTCCTTTGGAAAAGCTATGTTTCTCCCATCAACATGTAACCC  249

seq1  GAGATT-CCCCAGCACCCTGCCT-ATCTTTGGA-GGATGGACTGCAGAGA  275
      |||||| |||||||||||||||| ||||||||| ||||||||||||||||
seq2  GAGATTCCCCCAGCACCCTGCCTAATCTTTGGAGGGATGGACTGCAGAGA  299

seq1  TAAGCTAGCCATGCAATCCATAATCTCGAGCTTGCAGTTATGTGTTTGGC  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGCCATGCAATCCATAATCTCGAGCTTGCAGTTATGTGTTTGGC  349

seq1  TCTCGATGGATCTGCCCTCTACCACAAAGAAAGGTCTTTGAAACATTTCA  375
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTCGATGGATCTGCCCTCTACCACAAAGAAAGGTCTTTGAAACA-TTCA  398

seq1  GGGAGAATCTCTTGGCCAATGACAACCTTTCATTGAGATTTTTCATTACA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATCTCTTGGCCAATGACAACCTTTCATTGAGATTTTTCATTACA  448

seq1  TATTTTGGGGGCTCCATAGGCTATTGTATGGAAACATTTCAGCAGAGGAC  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGGGGCTCCATAGGCTATTGTATGGAAACATTTCAGCAGAGGAC  498

seq1  CCCAAGGATGACCTGTGAATACATGCCGCAGAGAGACGACTTTAACTTTG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGATGACCTGTGAATACATGCCGCAGAGAGACGACTTTAACTTTG  548

seq1  TGTCAGATTGTCCACTTGTAGATGTGAAGTTTCCCTTTCCTCTGTGTGTA  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATTGTCCACTTGTAGATGTGAAGTTTCCCTTTCCTCTGTGTGTA  598

seq1  TGTGTGTTTACATACACACACGGATATGCATGCAAGTGTGCATTGTGTGT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTACATACACACACGGATATGCATGCAAGTGTGCATTGTGTGT  648

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGATTTTCTCTCATCTGGAAAGAGGGC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGATTTTCTCTCATCTGGAAAGAGGGC  698

seq1  AGATCTGGAGATCATTTCGCAGACTCGGGGGTCAGTTTATGCATAGTCCA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGGAGATCATTTCGCAGACTCGGGGGTCAGTTTATGCATAGTCCA  748

seq1  TAGTCCTTAGGAGCATTCATTCCATCCTAGAGAAAGCAGGGGCGCCTCCA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTAGGAGCATTCATTCCATCCTAGAGAAAGCAGGGGCGCCTCCA  798

seq1  AGAGCAAAACATTCTCGGCGTCTTCCTTCTGCTGTTTGCAACACTGACTC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAACATTCTCGGCGTCTTCCTTCTGCTGTTTGCAACACTGACTC  848

seq1  ACATTTCTTGAAGGAGGTTCGGCATCTGCTGTGTGGTTCTCAGTGTGACA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTTGAAGGAGGTTCGGCATCTGCTGTGTGGTTCTCAGTGTGACA  898

seq1  CAAGTGGGCTTCGCTTCCCTCCCAGGGAAAGTGTGCCCCTGCCTCACCTG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGCTTCGCTTCCCTCCCAGGGAAAGTGTGCCCCTGCCTCACCTG  948

seq1  TTGAGGGCAGGTGAGGTGAACAGAGCTTGTGTGTGTTGAGGAGCCTGGGG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCAGGTGAGGTGAACAGAGCTTGTGTGTGTTGAGGAGCCTGGGG  998

seq1  AGGAACCATCCTGGTGGCTCTCTCAGTGGAGCAGAGTCAGCTGTGCTTGT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCATCCTGGTGGCTCTCTCAGTGGAGCAGAGTCAGCTGTGCTTGT  1048

seq1  CCCCGCTTCACCTGCCTGATGGTGACACAGAAGTGAGGTTGGAAAGGTTG  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTTCACCTGCCTGATGGTGACACAGAAGTGAGGTTGGAAAGGTTG  1098

seq1  TGCTGTGCCTTGAAATCTCATAATGACATAAATGAGCCATTCAGTGCCCG  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCCTTGAAATCTCATAATGACATAAATGAGCCATTCAGTGCCCG  1148

seq1  TGGAAGGAGCTATAGAGAGAATTC  1149
      ||||||||||||||||||||||||
seq2  TGGAAGGAGCTATAGAGAGAATTC  1172


| Home | SequenceCutter | Blast | Download |