BAC Information

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BAC

Clone NameB6Ng01-179L01
Chromosome9 (Build37)
Map Location 100,662,820 - 100,799,885
singlet/doubletdoublet
Overlap geneStag1, LOC100040990
Upstream geneSox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486
Downstream genePccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179L01.bB6Ng01-179L01.g
ACCGA006339GA006340
length1,1391,154
definitionB6Ng01-179L01.b B6Ng01-179L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,662,820 - 100,663,943)(100,798,756 - 100,799,885)
sequence
gaattcaaagtcctcaaaaaaataaataaaggtagatgatctaacttatg
accaaactatatcttctagacattacccaaagatgtgcacaccacacagg
tgctagcatgccagtgcttattgcggtgctgtccactgttgctaagttat
gctagataggagttcagcaagagagagatgggtaaggaaatgttttttat
gtattcagcaggactttgttttatagtcataaaaagagtaaagtcatttt
atttgtaggaaaattgattcaactcttaacaaaaaaggcagttaactaca
aaagttatttgagtttcatagagactatgtacattttgctgttcaccatg
ctaatatagtgaagctgaaaaacactatgttttttcaaatttgctaccaa
atgtattccaactaaatgtaactttagaggatttttactctggtgtgatt
attattacggccactagcctttattattgtacatattgataattatcaaa
ggatatgtttcattgctgtacttttttaggttaggattctttttattaat
gcatcttcatatgatagtttaaaaaaactcttaaaactttcattctggta
aattcatcttgggtttttatactgctgcctttcaatgagtgcagattaat
aaaggttccacaggtgccttttaagatgttttgttattgttacactttcc
ttgatgtaactaatacctatcagaaatggaagtcaggatagttttacttt
tgttcatggtcattgctttggatcatggttggcagctactttgatttttg
tttgtttggttttgtttttttttcgagacagggtttctctgtgtagccct
ggctgtcctcgaattcactttgtagaccaggctgacctcgaactcagaaa
tccgcttgccttctgcctcccaagtgctggaaattaaaggcgtgcgccac
agctttctttggatctttaagaaaagaccagaatacgattgtcagctgac
aattgttattaaaggctgccttagttttataaatggcccagaaatgaagg
taggagtgttaacagaaagggtcagagccagattataattttccaaagtt
acctctagtgatcttacttcttccaaggtagccactact

gaattccaatcaaatgaaaagtcaaataagcatcaacactagacacaata
attggtctaaccaagtatacacactcagggctggagagacggctcagagg
ttaagagcactgactgctctttcagaggtcctgagttcaaatcccagcaa
ccacatggggttcattcccatctataatgtgatctggtgctcccttctgg
tgtgctcacataatgtagacagggcactgtatatataataaataaataat
ctttaattaagtattcatactcagggttgagtgttaagatgcaaaaagag
atgctcacaacttaactagcaagagaagataacgctaggaaggaaaaaaa
aaaaaaaaaaaaaaggcaagcaagcaagcaagcaagcaagcaagcaagca
aaaccccccaaaaaatcaactttccagagaagcaaccatttaccttaagt
ctgtttttattatagtttcaatttatttttatctttagttataagattta
atgatttttatctttagtatatgctaagaacatgcagtaccagggatctg
aaaaaaaaatacaccaactattcttgtaataatgtaaaacaggaaaaatg
gaaattcgaaagtaagctttgttggtaaagggcaaccaggtttccccagg
atttaagtatagccataaccagtgtgagtaagcagaagctagctcacaga
tgactttacaagtagttgaacacacatcctgtcgattcttagttctcagt
ttcgttccacagtaattaatagtaaccttttttattttcagaagaatttt
tctttgggtaatatagtgattatcttactattagcaggaaaatttgaaat
ctatttaaaagtgtcaggaaaccaaaaaataagtcatttggtagaagagt
gacattatttataatgttacttataaaatcacaagcttaataacaaagat
taaatagcttaattgttgactaaaaatggtgtttaaaccacattttttat
ttttatggaatacgagtgtttgtcctaacatgtattaccaatgaaatgaa
acccaacagggcatgctggggtaaattaacattgataaacctaagaaata
ccgaatcaagtcttcctggatctgaagcttacgatggcactggtgagggt
actg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100662820_100663943
seq2: B6Ng01-179L01.b_41_1179

seq1  GAATTCAAAGTCCTCAAAAAAATAAATAAAGGTAGATGATCTAACTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCCTCAAAAAAATAAATAAAGGTAGATGATCTAACTTATG  50

seq1  ACCAAACTATATCTTCTAGACATTACCCAAAGATGTGCACACCACACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTATATCTTCTAGACATTACCCAAAGATGTGCACACCACACAGG  100

seq1  TGCTAGCATGCCAGTGCTTATTGCGGTGCTGTCCACTGTTGCTAAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCATGCCAGTGCTTATTGCGGTGCTGTCCACTGTTGCTAAGTTAT  150

seq1  GCTAGATAGGAGTTCAGCAAGAGAGAGATGGGTAAGGAAATGTTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATAGGAGTTCAGCAAGAGAGAGATGGGTAAGGAAATGTTTTTTAT  200

seq1  GTATTCAGCAGGACTTTGTTTTATAGTCATAAAAAGAGTAAAGTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGCAGGACTTTGTTTTATAGTCATAAAAAGAGTAAAGTCATTTT  250

seq1  ATTTGTAGGAAAATTGATTCAACTCTTAACAAAAAAGGCAGTTAACTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGGAAAATTGATTCAACTCTTAACAAAAAAGGCAGTTAACTACA  300

seq1  AAAGTTATTTGAGTTTCATAGAGACTATGTACATTTTGCTGTTCACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTTGAGTTTCATAGAGACTATGTACATTTTGCTGTTCACCATG  350

seq1  CTAATATAGTGAAGCTGAAAAACACTATGTTTTTTCAAATTTGCTACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAGTGAAGCTGAAAAACACTATGTTTTTTCAAATTTGCTACCAA  400

seq1  ATGTATTCCAACTAAATGTAACTTTAGAGGATTTTTACTCTGGTGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCCAACTAAATGTAACTTTAGAGGATTTTTACTCTGGTGTGATT  450

seq1  ATTATTACGGCCACTAGCCTTTATTATTGTACATATTGATAATTATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACGGCCACTAGCCTTTATTATTGTACATATTGATAATTATCAAA  500

seq1  GGATATGTTTCATTGCTGTACTTTTTTAGGTTAGGATTCTTTTTATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTTTCATTGCTGTACTTTTTTAGGTTAGGATTCTTTTTATTAAT  550

seq1  GCATCTTCATATGATAGTTTAAAAAAACTCTTAAAACTTTCATTCTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCATATGATAGTTTAAAAAAACTCTTAAAACTTTCATTCTGGTA  600

seq1  AATTCATCTTGGGTTTTTATACTGCTGCCTTTCAATGAGTGCAGATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCTTGGGTTTTTATACTGCTGCCTTTCAATGAGTGCAGATTAAT  650

seq1  AAAGGTTCCACAGGTGCCTTTTAAGATGTTTTGTTATTGTTACACTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCCACAGGTGCCTTTTAAGATGTTTTGTTATTGTTACACTTTCC  700

seq1  TTGATGTAACTAATACCTATCAGAAATGGAAGTCAGGATAGTTTTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTAACTAATACCTATCAGAAATGGAAGTCAGGATAGTTTTACTTT  750

seq1  TGTTCATGGTCATTGCTTTGGATCATGGTTGGCAGCTACTTTGATTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGGTCATTGCTTTGGATCATGGTTGGCAGCTACTTTGATTTTTG  800

seq1  TTTGTTTGGTTTTG-TTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGTTTTGTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCT  850

seq1  GGCTGTCCTCGAATTCACTTTGTAGACCAGGCTGACCTCGAACTCAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTCGAATTCACTTTGTAGACCAGGCTGACCTCGAACTCAGAAA  900

seq1  TCCGCTTGCC-TCTGCCTCCCAAGTGCTGG-AATTAAAGGCGTGCGCCAC  947
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TCCGCTTGCCTTCTGCCTCCCAAGTGCTGGAAATTAAAGGCGTGCGCCAC  950

seq1  AGC-TTCTTT-GATC-TTAAGAAAAGA-CAGAATACGA-TGTCAGCTGAC  992
      ||| |||||| |||| ||||||||||| |||||||||| |||||||||||
seq2  AGCTTTCTTTGGATCTTTAAGAAAAGACCAGAATACGATTGTCAGCTGAC  1000

seq1  AATTG-TAATAAAGGCTG-CTTAG-TTTAT-AATGG-CCAGAAATG-AGG  1036
      ||||| || ||||||||| ||||| ||||| ||||| ||||||||| |||
seq2  AATTGTTATTAAAGGCTGCCTTAGTTTTATAAATGGCCCAGAAATGAAGG  1050

seq1  TAGGAGTGTTAACAGAAAGGGTCCAGAGCAAGA-TATAATTT--CAAAGT  1083
      |||||||||||||||||||||| |||||| ||| ||||||||  ||||||
seq2  TAGGAGTGTTAACAGAAAGGGT-CAGAGCCAGATTATAATTTTCCAAAGT  1099

seq1  TAACCTCCTAAGTGATC-TACTTCTTCC-AGGTAGCCACTACT  1124
      | |||||   ||||||| |||||||||| ||||||||||||||
seq2  T-ACCTC--TAGTGATCTTACTTCTTCCAAGGTAGCCACTACT  1139


seq1: chr9_100798756_100799885
seq2: B6Ng01-179L01.g_65_1218 (reverse)

seq1  CAGTCCCCTCA-CAGTGCCATCTGTAGCTTCAGTTCCA-GAAGACCTGA-  47
      |||| |||||| ||||||||||   |||||||| |||| |||||| ||| 
seq2  CAGTACCCTCACCAGTGCCATCGTAAGCTTCAGATCCAGGAAGACTTGAT  50

seq1  TCGTTATTTC-TAG--TTTTCAATGTT-ATTTA-CCCAGCATG-CCTG-T  90
      ||| |||||| |||  || |||||||| ||||| ||||||||| |||| |
seq2  TCGGTATTTCTTAGGTTTATCAATGTTAATTTACCCCAGCATGCCCTGTT  100

seq1  GGTTTTCA-TTCA-TGGT-ATACATGT--AGACAAACACTCGTA-TCCAT  134
      || ||||| |||| |||| ||||||||   |||||||||||||| |||||
seq2  GGGTTTCATTTCATTGGTAATACATGTTAGGACAAACACTCGTATTCCAT  150

seq1  AAAA--TAAAAATGT-GTTTAAACA-CATTTTTAGTCAACAATTAAGCTA  180
      ||||   |||||||| ||||||||| ||||||||||||||||||||||||
seq2  AAAAATAAAAAATGTGGTTTAAACACCATTTTTAGTCAACAATTAAGCTA  200

seq1  TTT-ATCTTTGTTATT-AGCTTGTGATTTTTATAAGTAACA-TAT-AATA  226
      ||| |||||||||||| ||||||||| |||||||||||||| ||| ||||
seq2  TTTAATCTTTGTTATTAAGCTTGTGA-TTTTATAAGTAACATTATAAATA  249

seq1  ATGTCACTCTTCTACCAAATGACTTATTTTTT-GTTTCCTGACACTTTTA  275
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGTCACTCTTCTACCAAATGACTTATTTTTTGGTTTCCTGACACTTTTA  299

seq1  AATAGATTTCAAATTTTCCTGCTAATAGTAAGATAATCACTATATTACCC  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTCAAATTTTCCTGCTAATAGTAAGATAATCACTATATTACCC  349

seq1  AAAGAAAAATTCTTCTGAAAATAAAAAAGGTTACTATTAATTACTGTGGA  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATTCTTCTGAAAATAAAAAAGGTTACTATTAATTACTGTGGA  399

seq1  ACGAAACTGAGAACTAAGAATCGACAGGATGTGTGTTCAACTACTTGTAA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAACTGAGAACTAAGAATCGACAGGATGTGTGTTCAACTACTTGTAA  449

seq1  AGTCATCTGTGAGCTAGCTTCTGCTTACTCACACTGGTTATGGCTATACT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGTGAGCTAGCTTCTGCTTACTCACACTGGTTATGGCTATACT  499

seq1  TAAATCCTGGGGAAACCTGGTTGCCCTTTACCAACAAAGCTTACTTTCGA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTGGGGAAACCTGGTTGCCCTTTACCAACAAAGCTTACTTTCGA  549

seq1  ATTTCCATTTTTCCTGTTTTACATTATTACAAGAATAGTTGGTGTATTTT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATTTTTCCTGTTTTACATTATTACAAGAATAGTTGGTGTATTTT  599

seq1  TTTTTCAGATCCCTGGTACTGCATGTTCTTAGCATATACTAAAGATAAAA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGATCCCTGGTACTGCATGTTCTTAGCATATACTAAAGATAAAA  649

seq1  ATCATTAAATCTTATAACTAAAGATAAAAATAAATTGAAACTATAATAAA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAATCTTATAACTAAAGATAAAAATAAATTGAAACTATAATAAA  699

seq1  AACAGACTTAAGGTAAATGGTTGCTTCTCTGGAAAGTTGATTTTTTGGGG  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTTAAGGTAAATGGTTGCTTCTCTGGAAAGTTGATTTTTTGGGG  749

seq1  GGTTTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCCTTTTTTTTT  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCCTTTTTTTTT  799

seq1  TTTTTTTTTTTTCCTTCCTAGCGTTATCTTCTCTTGCTAGTTAAGTTGTG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCCTTCCTAGCGTTATCTTCTCTTGCTAGTTAAGTTGTG  849

seq1  AGCATCTCTTTTTGCATCTTAACACTCAACCCTGAGTATGAATACTTAAT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCTTTTTGCATCTTAACACTCAACCCTGAGTATGAATACTTAAT  899

seq1  TAAAGATTATTTATTTATTATATATACAGTGCCCTGTCTACATTATGTGA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTATTTATTTATTATATATACAGTGCCCTGTCTACATTATGTGA  949

seq1  GCACACCAGAAGGGAGCACCAGATCACATTATAGATGGGAATGAACCCCA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAGAAGGGAGCACCAGATCACATTATAGATGGGAATGAACCCCA  999

seq1  TGTGGTTGCTGGGATTTGAACTCAGGACCTCTGAAAGAGCAGTCAGTGCT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGGGATTTGAACTCAGGACCTCTGAAAGAGCAGTCAGTGCT  1049

seq1  CTTAACCTCTGAGCCGTCTCTCCAGCCCTGAGTGTGTATACTTGGTTAGA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTCTGAGCCGTCTCTCCAGCCCTGAGTGTGTATACTTGGTTAGA  1099

seq1  CCAATTATTGTGTCTAGTGTTGATGCTTATTTGACTTTTCATTTGATTGG  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATTGTGTCTAGTGTTGATGCTTATTTGACTTTTCATTTGATTGG  1149

seq1  AATTC  1130
      |||||
seq2  AATTC  1154


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