BAC Information

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BAC

Clone NameB6Ng01-179M04
Chromosome9 (Build37)
Map Location 88,250,752 - 88,251,933
singlet/doubletsinglet
Overlap geneNt5e
Upstream geneLOC671706, Tbx18, LOC671731, LOC100039580, LOC384962, EG272633
Downstream geneSnx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179M04.b
ACCGA006393
length1,196
definitionB6Ng01-179M04.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcatgtcatgattaaaagtctacactacaagcacatagcaca
cataatgaaactaaaaaaattattgatctccagacaaaggtcagccaacg
gtagaatttttaaaagatgaaatttttttttagatattttcagtggttct
tggacctgaatccagacctttctgtattttaaacacctatattcccagct
tttggttttctaagacagagtttcactatctagccctgattggccccatt
ctcccacctctcaggagaatggtaggactataagcatacacctctgtatc
tggtttggaaagtttcatcatcatcatcattttcatagaacttcttagaa
tttttaaatgctgaatatatattacatttggaatcaggaagtgagataca
gtacaaattatagaaagaaaagaaacacgatattgagtcaaagtcctcat
tcctaactcacttgaatgaccttgaacaggcaagtcacctgaccctctgg
gcactttggctttctaataagaagtctgtcaccgttttgaagattaagag
tctgggaacagttgacttcactggtttggccttgggtgaatgtccccctg
gctcttcatcatatcacaacatgggagagaatcaggaagggacatgtaca
gggagcccaggtgtgtgtggtggccctcctgttacaaccactccctcaca
tagaactaactgtggtctcaaaagaactactctcctctgagggtgctagc
tccagtgaccttgtcacctcacattagacactccttgaaggtttcaccgt
ccctcagtgtcaccacagtgaggactaataagctgctaacacatgaacac
acactagacaaaccacatcccaagacacaacagtttcaggtgagtctttc
atacttgcctgtcttattacaattctacagcaatcctgtggatatgacct
attcaaactctgggggctttgtagctcttccccaaagggaagttttagaa
ggctacacacacagcagaaacagttgatggcctcctgccacttcactctt
atatgttggcttgagccacagttagcatgacatttttacaggaggatctt
aacaggttataacgtgtacgaacttggtgcaactcttcagagatattgta
ttaggttaaccgaaaattccccaaggcacccaggtacttcctgctt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88250752_88251933
seq2: B6Ng01-179M04.b_42_1237

seq1  GAATTCATTCATGTCATGATTAAAAGTCTACACTACAAGCACATAGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATGTCATGATTAAAAGTCTACACTACAAGCACATAGCACA  50

seq1  CATAATGAAACTAAAAAAATTATTGATCTCCAGACAAAGGTCAGCCAACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAAACTAAAAAAATTATTGATCTCCAGACAAAGGTCAGCCAACG  100

seq1  GTAGAATTTTTAAAAGATGAAATTTTTTTTTAGATATTTTCAGTGGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTTTTAAAAGATGAAATTTTTTTTTAGATATTTTCAGTGGTTCT  150

seq1  TGGACCTGAATCCAGACCTTTCTGTATTTTAAACACCTATATTCCCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGAATCCAGACCTTTCTGTATTTTAAACACCTATATTCCCAGCT  200

seq1  TTTGGTTTTCTAAGACAGAGTTTCACTATCTAGCCCTGATTGGCCCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTCTAAGACAGAGTTTCACTATCTAGCCCTGATTGGCCCCATT  250

seq1  CTCCCACCTCTCAGGAGAATGGTAGGACTATAAGCATACACCTCTGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTCTCAGGAGAATGGTAGGACTATAAGCATACACCTCTGTATC  300

seq1  TGGTTTGGAAAGTTTCATCATCATCATCATTTTCATAGAACTTCTTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGAAAGTTTCATCATCATCATCATTTTCATAGAACTTCTTAGAA  350

seq1  TTTTTAAATGCTGAATATATATTACATTTGGAATCAGGAAGTGAGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGCTGAATATATATTACATTTGGAATCAGGAAGTGAGATACA  400

seq1  GTACAAATTATAGAAAGAAAAGAAACACGATATTGAGTCAAAGTCCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATTATAGAAAGAAAAGAAACACGATATTGAGTCAAAGTCCTCAT  450

seq1  TCCTAACTCACTTGAATGACCTTGAACAGGCAAGTCACCTGACCCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTCACTTGAATGACCTTGAACAGGCAAGTCACCTGACCCTCTGG  500

seq1  GCACTTTGGCTTTCTAATAAGAAGTCTGTCACCGTTTTGAAGATTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGGCTTTCTAATAAGAAGTCTGTCACCGTTTTGAAGATTAAGAG  550

seq1  TCTGGGAACAGTTGACTTCACTGGTTTGGCCTTGGGTGAATGTCCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAACAGTTGACTTCACTGGTTTGGCCTTGGGTGAATGTCCCCCTG  600

seq1  GCTCTTCATCATATCACAACATGGGAGAGAATCAGGAAGGGACATGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCATCATATCACAACATGGGAGAGAATCAGGAAGGGACATGTACA  650

seq1  GGGAGCCCAGGTGTGTGTGGTGGCCCTCCTGTTACAACCACTCCCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCAGGTGTGTGTGGTGGCCCTCCTGTTACAACCACTCCCTCACA  700

seq1  TAGAACTAACTGTGGTCTCAAAAGAACTACTCTCCTCTGAGGGTGCTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTAACTGTGGTCTCAAAAGAACTACTCTCCTCTGAGGGTGCTAGC  750

seq1  TCCAGTGACCTTGTCACCTCACATTAGACACTCCTTGAAGGTTTCACCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGACCTTGTCACCTCACATTAGACACTCCTTGAAGGTTTCACCGT  800

seq1  CCCTCAGTGTCACCACAGTGAGGACTAATAAGCTGCTAACACATGAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTGTCACCACAGTGAGGACTAATAAGCTGCTAACACATGAACAC  850

seq1  ACACTAGACAAACCACAT-CCAAGACACAACAGTTTCAGGTGAGTC-TTC  898
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  ACACTAGACAAACCACATCCCAAGACACAACAGTTTCAGGTGAGTCTTTC  900

seq1  ATACTTGCCTGGTCTTATTACAATTCTACAGCAATCCTGTGGATATGACC  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCCT-GTCTTATTACAATTCTACAGCAATCCTGTGGATATGACC  949

seq1  TATTCAAACTCTGGGGGCTTTGTAGCTCTTCCCCAA--GGGAGTTTTAGA  996
      ||||||||||||||||||||||||||||||||||||  || |||||||||
seq2  TATTCAAACTCTGGGGGCTTTGTAGCTCTTCCCCAAAGGGAAGTTTTAGA  999

seq1  AGGCTACAACACACAGCAGAAACCAGTTGATG--CTCCTGCCACTTCACC  1044
      ||||||| |||||||||||||| |||||||||  ||||||||||||||| 
seq2  AGGCTAC-ACACACAGCAGAAA-CAGTTGATGGCCTCCTGCCACTTCACT  1047

seq1  CTT-TATGTTGGCTTGAGCCACAGTTAGCATGACA-TTTTACAAGAGGAT  1092
      ||| ||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  CTTATATGTTGGCTTGAGCCACAGTTAGCATGACATTTTTACAGGAGGAT  1097

seq1  C-TAACAGG-TAT-ACGTGTACAGACTT-GTGC-ACTC-TCAGAGATA-T  1135
      | ||||||| ||| ||||||||  |||| |||| |||| ||||||||| |
seq2  CTTAACAGGTTATAACGTGTACGAACTTGGTGCAACTCTTCAGAGATATT  1147

seq1  GTATAAAGTAAACCGAAAA-TCCCCAAAGCACCCAG--ACTATCCTGCTT  1182
      |||| | || ||||||||| ||||||| ||||||||  ||| ||||||||
seq2  GTATTAGGTTAACCGAAAATTCCCCAAGGCACCCAGGTACT-TCCTGCTT  1196