BAC Information

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BAC

Clone NameB6Ng01-179M11
Chromosome9 (Build37)
Map Location 101,409,244 - 101,560,085
singlet/doubletdoublet
Overlap genenone
Upstream geneNck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179M11.bB6Ng01-179M11.g
ACCGA006406GA006407
length1,2251,107
definitionB6Ng01-179M11.b B6Ng01-179M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,409,244 - 101,410,458)(101,558,976 - 101,560,085)
sequence
gaattctttacttcctggctattgttgtgttatagcaactgaaaataaac
caaggcctccccccacaaataaaaacccagggtcagattgcacatctgat
tgctctcaacacaccaggaaggaaatgacaagtagacaggagacagtagc
catagtaagaaacttctttgtggaaactaaaaaatcatggccagaagaga
tcatgctgtctgcgctaatgaatatcatgtatcaagtcttcctggttgtg
actagttcccattggccgatatggctgaccttgctctgcccagagaacag
ctcccttatctactgttctcctcagccacatgtggggtgaactgtacagt
gtatatccaccccgggattcatatttactcttctaattcacttcctgctc
cagggaattttagggcactgggtccaatcttaggatacagcaaccatagg
cttttatttttaggacttgaactatgatcaattaaccagtcggttagctt
tccagaaccttcaagggatattaaccaaagccagaggtcttatggagtca
cggtccacaaaatttgtccctgcttttatagtgtttgtctcttagcaaca
ggctcaagtgccttgggcctacatctggcccaggctttagctgtttcatt
ttgccttcgccagcagtgtccaaggcaaaggtagcaggatggtgatgctt
cccaccaccctggggctcctactaggggagaagttttatctttggagcag
caagtgagctgtgggtgttggaaggggctggcctgttaggatcacccctc
gttcctagttttttcttggccacctctgtctatcactttcctatcactac
tcactaattttggctttgggaacatactgatttgactcttaaccttttta
gatttttggctattaccccttaataaggctcttccattatcttcacttct
ggttttagtttggcaagcctgtatagaaatgacatacatgcttcagttgt
gatcatattacttttatgtaaactgagtaccaaggttatagcatccactg
tttagcagtttcctcagaacccattaagaaccgcatttatcagggcttgg
ggcatcactcattaatagaggcaagtgattatctctatttcttgatcccc
agaccacccccaatgtaaaaatcctaggtaaccctctcatgcatcccaag
agtaacaataactctccacaggatc

ataccactgagctaacctctgtcactcgcagactcactcggccttctccc
tttgtccaagaatgggaggttcacttcccgttcttcacaacaggtcctcc
tggtgagtaagaaaagttcttggctccttcctgagagaaagcagccccgc
aaggcttgtgaacaaatgagtgtgctccaacctactgatgcatctttgaa
ctctgatttcacttctcaggagcccaatttcattacagccaagtgctctg
tgcggcagagagtggcagagagggaaacaatgaaattataccctctttgt
ttggacttcaatggcatcacaaagcacagaaactttccatgatatcacct
cctcttaatgcgaatatttactgcctagatcccttgagtaatatctcctt
tctttcacactctgttcaatttcgggtttcaatttcagtaattttattga
catgacaacatacacaaatgctgctggagttaatccagcagagctccatg
tctagggcctattttatatgctctctgtcttttctattattctccatctc
tcatttgctgataggctgtcaggggataggagggttatctgactgtcctt
attttccttggaaattatggggaattttccctcacatctgagatggcagt
ctattgcactttaaggcagcctgataaaagaatgtgatctattttcttta
tgccttatacactggaggtttctcgcctatctctttggctcccctaatat
caaagtctgtctcgtgtaagtttcaaatcatcttgtgatgcctgttgtag
tctttgccttggtattttttgggtgctagaattgtagactttaaacctat
ttaaggtttgaaggatatgttgattactttagcttcaagcaactagttac
tataagctgactgtccttagttaaaaggacataaactatattgcctactg
gttcttgaagattagaaccccaagcaaagtgttaccaagacctcaccaaa
ggccatagagagaacccttgtttacttcttcctgtgagattcatctgggt
gtttctttgctttggctatttatcatctaaccttgttaccatgatcaagg
gatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101409244_101410458
seq2: B6Ng01-179M11.b_42_1266

seq1  GAATTCTTTACTTCCTGGCTATTGTTGTGTTATAGCAACTGAAAATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTTCCTGGCTATTGTTGTGTTATAGCAACTGAAAATAAAC  50

seq1  CAAGGCCTCCCCCCACAAATAAAAACCCAGGGTCAGATTGCACATCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTCCCCCCACAAATAAAAACCCAGGGTCAGATTGCACATCTGAT  100

seq1  TGCTCTCAACACACCAGGAAGGAAATGACAAGTAGACAGGAGACAGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAACACACCAGGAAGGAAATGACAAGTAGACAGGAGACAGTAGC  150

seq1  CATAGTAAGAAACTTCTTTGTGGAAACTAAAAAATCATGGCCAGAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAGAAACTTCTTTGTGGAAACTAAAAAATCATGGCCAGAAGAGA  200

seq1  TCATGCTGTCTGCGCTAATGAATATCATGTATCAAGTCTTCCTGGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGTCTGCGCTAATGAATATCATGTATCAAGTCTTCCTGGTTGTG  250

seq1  ACTAGTTCCCATTGGCCGATATGGCTGACCTTGCTCTGCCCAGAGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCCCATTGGCCGATATGGCTGACCTTGCTCTGCCCAGAGAACAG  300

seq1  CTCCCTTATCTACTGTTCTCCTCAGCCACATGTGGGGTGAACTGTACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTATCTACTGTTCTCCTCAGCCACATGTGGGGTGAACTGTACAGT  350

seq1  GTATATCCACCCCGGGATTCATATTTACTCTTCTAATTCACTTCCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCACCCCGGGATTCATATTTACTCTTCTAATTCACTTCCTGCTC  400

seq1  CAGGGAATTTTAGGGCACTGGGTCCAATCTTAGGATACAGCAACCATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATTTTAGGGCACTGGGTCCAATCTTAGGATACAGCAACCATAGG  450

seq1  CTTTTATTTTTAGGACTTGAACTATGATCAATTAACCAGTCGGTTAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTTAGGACTTGAACTATGATCAATTAACCAGTCGGTTAGCTT  500

seq1  TCCAGAACCTTCAAGGGATATTAACCAAAGCCAGAGGTCTTATGGAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACCTTCAAGGGATATTAACCAAAGCCAGAGGTCTTATGGAGTCA  550

seq1  CGGTCCACAAAATTTGTCCCTGCTTTTATAGTGTTTGTCTCTTAGCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCACAAAATTTGTCCCTGCTTTTATAGTGTTTGTCTCTTAGCAACA  600

seq1  GGCTCAAGTGCCTTGGGCCTACATCTGGCCCAGGCTTTAGCTGTTTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAGTGCCTTGGGCCTACATCTGGCCCAGGCTTTAGCTGTTTCATT  650

seq1  TTGCCTTCGCCAGCAGTGTCCAAGGCAAAGGTAGCAGGATGGTGATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCGCCAGCAGTGTCCAAGGCAAAGGTAGCAGGATGGTGATGCTT  700

seq1  CCCACCACCCTGGGGCTCCTACTAGGGGAGAAGTTTTATCTTTGGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACCCTGGGGCTCCTACTAGGGGAGAAGTTTTATCTTTGGAGCAG  750

seq1  CAAGTGAGCTGTGGGTGTTGGAAGGGGCTGGCCTGTTAGGATCACCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGCTGTGGGTGTTGGAAGGGGCTGGCCTGTTAGGATCACCCCTC  800

seq1  GTTCCTAGTTTTTTCTTGGCCACCTCTGTCTATCACTTTCCTATCACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGTTTTTTCTTGGCCACCTCTGTCTATCACTTTCCTATCACTAC  850

seq1  TCACTAATTTTGGCTTTGGGAACATACTGATTTGACTCTTAGCCTTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACTAATTTTGGCTTTGGGAACATACTGATTTGACTCTTAACCTTTTTA  900

seq1  GATTTTTGGCTATTACCCCTTAGTAAGGCTCTTCCATTTATCTTCACTTC  950
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  GATTTTTGGCTATTACCCCTTAATAAGGCTCTTCCA-TTATCTTCACTTC  949

seq1  TGGTTTTAGTTTGGCAAGCCTGTATAGAAATGACATTACATGCTTCAG-T  999
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TGGTTTTAGTTTGGCAAGCCTGTATAGAAATGACA-TACATGCTTCAGTT  998

seq1  GTGATCATA-TACTTTTATGTAAACTGAGTACCAAGG-TATAGCATCCAA  1047
      ||||||||| ||||||||||||||||||||||||||| |||||||||| |
seq2  GTGATCATATTACTTTTATGTAAACTGAGTACCAAGGTTATAGCATCC-A  1047

seq1  CTGTTTAGCAG-TTCCGCAGAACCCA-TAAGA--CGCA-TTATCAGGGC-  1091
      ||||||||||| |||| ||||||||| |||||  |||| |||||||||| 
seq2  CTGTTTAGCAGTTTCCTCAGAACCCATTAAGAACCGCATTTATCAGGGCT  1097

seq1  TGGGGCATCACTCAATAATAGA-GCAAGTGATTAGCTCTA-TTCTTGATC  1139
      |||||||||||||| ||||||| ||||||||||| ||||| |||||||||
seq2  TGGGGCATCACTCATTAATAGAGGCAAGTGATTATCTCTATTTCTTGATC  1147

seq1  CCCAGCACCA-CCCAAATG-AAAAAACCCAAGCAAC---CTCACGCATCC  1184
      ||||| |||| ||| |||| ||||| || | | |||   |||| ||||||
seq2  CCCAG-ACCACCCCCAATGTAAAAATCCTAGGTAACCCTCTCATGCATCC  1196

seq1  ACAGAGTAACAAATAAACATCTCACAGGATC  1215
        |||||||| |||||   || |||||||||
seq2  CAAGAGTAAC-AATAACTCTC-CACAGGATC  1225


seq1: chr9_101558976_101560085
seq2: B6Ng01-179M11.g_75_1181 (reverse)

seq1  GGAAATCACTAGATCATGGTAACAGGGTTTAGAGTGATAAATAGCCAAAA  50
      ||||||| || ||||||||||||| || ||||| |||||||||||| |||
seq2  GGAAATCCCTTGATCATGGTAACAAGG-TTAGA-TGATAAATAGCC-AAA  47

seq1  GGCAAGAAACACCCAGGATGAATCTTCACCAGGAAGAGTTAAACAAGGGT  100
      |  |||||||||||| |||||||| ||| ||||||||  |||||||||||
seq2  GCAAAGAAACACCCA-GATGAATC-TCA-CAGGAAGAAGTAAACAAGGGT  94

seq1  TCTCTCTATGGCCTTTGGTGAGGTCTTGGTAACACTTTGCTTTGGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||  ||| ||
seq2  TCTCTCTATGGCCTTTGGTGAGGTCTTGGTAACACTTTGCTT--GGGGTT  142

seq1  CTAATCTTCAAG-ACCAGTAGGCAATATAG-TTATGTCCTTTAAACTAA-  197
      |||||||||||| ||||||||||||||||| ||||||||||| |||||| 
seq2  CTAATCTTCAAGAACCAGTAGGCAATATAGTTTATGTCCTTTTAACTAAG  192

seq1  GACAGTCAGCTTATAGTAACTAG-TGCTTGAAGCTAAAGTAATCAACATA  246
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACAGTCAGCTTATAGTAACTAGTTGCTTGAAGCTAAAGTAATCAACATA  242

seq1  TCCTTCAAACCTTAAATAGGTTTAAAGTCTACAATTCTAGCA-CCAAAAA  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTTCAAACCTTAAATAGGTTTAAAGTCTACAATTCTAGCACCCAAAAA  292

seq1  ATACCAAGGCAAAGACTACAACAGGCATCACAAGATGATTTGAAACTTAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGGCAAAGACTACAACAGGCATCACAAGATGATTTGAAACTTAC  342

seq1  ACGAGACAGACTTTGATATTAGGGGAGCCAAAGAGATAGGCGAGAAACCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGACAGACTTTGATATTAGGGGAGCCAAAGAGATAGGCGAGAAACCT  392

seq1  CCAGTGTATAAGGCATAAAGAAAATAGATCACATTCTTTTATCAGGCTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTATAAGGCATAAAGAAAATAGATCACATTCTTTTATCAGGCTGC  442

seq1  CTTAAAGTGCAATAGACTGCCATCTCAGATGTGAGGGAAAATTCCCCATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTGCAATAGACTGCCATCTCAGATGTGAGGGAAAATTCCCCATA  492

seq1  ATTTCCAAGGAAAATAAGGACAGTCAGATAACCCTCCTATCCCCTGACAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAGGAAAATAAGGACAGTCAGATAACCCTCCTATCCCCTGACAG  542

seq1  CCTATCAGCAAATGAGAGATGGAGAATAATAGAAAAGACAGAGAGCATAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAGCAAATGAGAGATGGAGAATAATAGAAAAGACAGAGAGCATAT  592

seq1  AAAATAGGCCCTAGACATGGAGCTCTGCTGGATTAACTCCAGCAGCATTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGCCCTAGACATGGAGCTCTGCTGGATTAACTCCAGCAGCATTT  642

seq1  GTGTATGTTGTCATGTCAATAAAATTACTGAAATTGAAACCCGAAATTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTTGTCATGTCAATAAAATTACTGAAATTGAAACCCGAAATTGA  692

seq1  ACAGAGTGTGAAAGAAAGGAGATATTACTCAAGGGATCTAGGCAGTAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGTGAAAGAAAGGAGATATTACTCAAGGGATCTAGGCAGTAAAT  742

seq1  ATTCGCATTAAGAGGAGGTGATATCATGGAAAGTTTCTGTGCTTTGTGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCATTAAGAGGAGGTGATATCATGGAAAGTTTCTGTGCTTTGTGAT  792

seq1  GCCATTGAAGTCCAAACAAAGAGGGTATAATTTCATTGTTTCCCTCTCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGAAGTCCAAACAAAGAGGGTATAATTTCATTGTTTCCCTCTCTG  842

seq1  CCACTCTCTGCCGCACAGAGCACTTGGCTGTAATGAAATTGGGCTCCTGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTGCCGCACAGAGCACTTGGCTGTAATGAAATTGGGCTCCTGA  892

seq1  GAAGTGAAATCAGAGTTCAAAGATGCATCAGTAGGTTGGAGCACACTCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAATCAGAGTTCAAAGATGCATCAGTAGGTTGGAGCACACTCAT  942

seq1  TTGTTCACAAGCCTTGCGGGGCTGCTTTCTCTCAGGAAGGAGCCAAGAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCACAAGCCTTGCGGGGCTGCTTTCTCTCAGGAAGGAGCCAAGAAC  992

seq1  TTTTCTTACTCACCAGGAGGACCTGTTGTGAAGAACGGGAAGTGAACCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACTCACCAGGAGGACCTGTTGTGAAGAACGGGAAGTGAACCTC  1042

seq1  CCATTCTTGGACAAAGGGAGAAGGCCGAGTGAGTCTGCGAGTGACAGAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTGGACAAAGGGAGAAGGCCGAGTGAGTCTGCGAGTGACAGAGG  1092

seq1  TTAGCTCAGTGGTAT  1110
      |||||||||||||||
seq2  TTAGCTCAGTGGTAT  1107


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