BAC Information

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BAC

Clone NameB6Ng01-180I07
Chromosome9 (Build37)
Map Location 28,120,022 - 28,254,497
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneIgsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180I07.bB6Ng01-180I07.g
ACCGA006926GA006927
length1,1821,124
definitionB6Ng01-180I07.b B6Ng01-180I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,120,022 - 28,121,176)(28,253,395 - 28,254,497)
sequence
gaattccaatttgtatatcaaaaaaacagtgaacatattgtatatgtttg
agaaacaacagaaagtgtttttgtgtatatagggccagcaacttgtggaa
acacacactaatggtgttttaaagactagttggtgaaccttaattagcat
tttatcacaaatcaaagggaagaaaatctaatgggttctctggtggttta
cacactcacatccccatgatcttggggacaggttgtccttttctttgtaa
atctgtgtcctgcttttaagcaaattaaggagaacagaaaatctttgctg
cacctgccacatcctaactgtcttcataccaacaatccctcatgtcttaa
agtggcaactgctggtcccacacacagactagtacaggagaattagaatt
gattacagcactgcatttttatgacacttgtcctcaaccaattcatcacc
tgctgcatgtataaacaccaccctgaggattcagaggaacacagggctca
tctgcactaagtaatattgaggaaccctacagagacgctgtagtgtggaa
ttctgaacaagtagaacgagcagcattttaaaaccattttcttctttaaa
atatgttacaaagaggatggaggaaggaatccttttaaattttcaaattt
ttattagaaagtatccttgcatttaattcctctgtcaaatgaactattat
actcccaaagagtaattatcttttatcatccctaaattacttaatattta
aagaaaatgtttaaataaaccatttgttaaattacctaaatatgatatgc
tgtgctgagttttattttaatgaaatttggaattattttgggagaaaatg
acatagacttagataagtacagtttaaaaataattcatagcattatttaa
attattttcttttttgggattattgtatattaactaaaaattaatcccag
gccatgaaaattggaaagattctatatttgttttagtctgagagatgttt
ttatcttggcaaattcaacacctttggttttcagtgtaaagaatagcccc
ataagaccaaggtagacttgaataagaattttgccagaaaagaaaaaatg
aatgtatcagttgccccaacccctctgtatccatgaactgacctgtgtgg
aatggggatgaagagcagggctcagaaaacac
gaattctctattgaagcctttcagaacaagagcagccaatacgatagcaa
cttcacatagttatggtggtgtgggcttatgtaagcccttctctctccag
gctgaggtaaatttatgtatggtttatgtaaatgaagataattgtaaatg
ttaatttctggtggaaagctatccactggaagaacaggggaaatacaagg
agaacagagctcatggtcctaatacctgtgggtaggggttatgggacatt
gccctacctgcttttggagaacctgagtccagcatccttcactgtctact
atgattgagtgagctaagggaacctgctcaaaacaaccaactccctgcca
tcctaaggggaatggttgaaatcagagcttgggatgagcaggctaacagc
tcaattagtttcagcgagtgggatgtgcactgaggcgtgctgagcagagt
gagcatcatggcattagtgttatttctgtgactcagctactcagctcttt
gctgtgcacttcactgaaaacccagggacaatgatcagagaaccaaagaa
agttttgacattggacaagagaaagaaagtaagacgttagaaagagatag
tagacattttagtgagctgccatgttcacaggctgaccagagaaagaaga
cattcaagtactattcattccacaaatgatggaagccaaaatctataact
tcataaaataaggggttttttccctatctatctcaagaagcctgacattg
ctgtcacatgactgcatgccctgtaagagataaagtcaatgggggaatgg
gcccaggatgaaaccctgagtcacaagtgcaaatctctgggcttccctgt
ctgagtcattccaattacaaaagactctttgttcatgcactgtattccag
cacagatggacactgattcaaaatggagtttatgaacactccatatggaa
aaaacttaataggggaaaataggaattaaactgggttatttgaggccaag
catatatgacttaccaccatggctcaagaattaatacccaagcagccatg
caccagcaaaggtagccgacattctttggaaaacattccaggttcaacct
tctactcattggatagtctacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28120022_28121176
seq2: B6Ng01-180I07.b_39_1220

seq1  GAATTCCAATTTGTATATCAAAAAAACAGTGAACATATTGTATATGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTGTATATCAAAAAAACAGTGAACATATTGTATATGTTTG  50

seq1  AGAAACAACAGAAAGTGTTTTTGTGTATATAGGGCCAGCAACTTGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACAGAAAGTGTTTTTGTGTATATAGGGCCAGCAACTTGTGGAA  100

seq1  ACACACACTAATGGTGTTTTAAAGACTAGTTGGTGAACCTTAATTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTAATGGTGTTTTAAAGACTAGTTGGTGAACCTTAATTAGCAT  150

seq1  TTTATCACAAATCAAAGGGAAGAAAATCTAATGGGTTCTCTGGTGGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAAATCAAAGGGAAGAAAATCTAATGGGTTCTCTGGTGGTTTA  200

seq1  CACACTCACATCCCCATGATCTTGGGGACAGGTTGTCCTTTTCTTTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACATCCCCATGATCTTGGGGACAGGTTGTCCTTTTCTTTGTAA  250

seq1  ATCTGTGTCCTGCTTTTAAGCAAATTAAGGAGAACAGAAAATCTTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTCCTGCTTTTAAGCAAATTAAGGAGAACAGAAAATCTTTGCTG  300

seq1  CACCTGCCACATCCTAACTGTCTTCATACCAACAATCCCTCATGTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCACATCCTAACTGTCTTCATACCAACAATCCCTCATGTCTTAA  350

seq1  AGTGGCAACTGCTGGTCCCACACACAGACTAGTACAGGAGAATTAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAACTGCTGGTCCCACACACAGACTAGTACAGGAGAATTAGAATT  400

seq1  GATTACAGCACTGCATTTTTATGACACTTGTCCTCAACCAATTCATCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGCACTGCATTTTTATGACACTTGTCCTCAACCAATTCATCACC  450

seq1  TGCTGCATGTATAAACACCACCCTGAGGATTCAGAGGAACACAGGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATGTATAAACACCACCCTGAGGATTCAGAGGAACACAGGGCTCA  500

seq1  TCTGCACTAAGTAATATTGAGGAACCCTACAGAGACGCTGTAGTGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTAAGTAATATTGAGGAACCCTACAGAGACGCTGTAGTGTGGAA  550

seq1  TTCTGAACAAGTAGAACGAGCAGCATTTTAAAACCATTTTCTTCTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACAAGTAGAACGAGCAGCATTTTAAAACCATTTTCTTCTTTAAA  600

seq1  ATATGTTACAAAGAGGATGGAGGAAGGAATCCTTTT-AATTTTCAAATTT  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATATGTTACAAAGAGGATGGAGGAAGGAATCCTTTTAAATTTTCAAATTT  650

seq1  TTATTAGAAAGTATCCTTGCATTTAATTCCTCTGTCAAATGAACTATTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAAAGTATCCTTGCATTTAATTCCTCTGTCAAATGAACTATTAT  700

seq1  ACTCCCAAAGAGTAATTATC-TTTATCATCCCTAAA-TACTTAATATTTA  747
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  ACTCCCAAAGAGTAATTATCTTTTATCATCCCTAAATTACTTAATATTTA  750

seq1  AAGAAAATGTTTAAATAAACCA-TTGTTAAATTACCTAAATATGATATGC  796
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGAAAATGTTTAAATAAACCATTTGTTAAATTACCTAAATATGATATGC  800

seq1  TGTGCTGAGTTTTATTTTAATGAAATTTGGAATTATTT--GGAG-AAATG  843
      ||||||||||||||||||||||||||||||||||||||  |||| |||||
seq2  TGTGCTGAGTTTTATTTTAATGAAATTTGGAATTATTTTGGGAGAAAATG  850

seq1  ACATAGAC-TAGATAAGTACAGTTTAAAAATAATTCATAGCATTATTTGA  892
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  ACATAGACTTAGATAAGTACAGTTTAAAAATAATTCATAGCATTATTTAA  900

seq1  AATATTT--CTTTTTGGGA-TATTGTATATTAACTAAAAA-TAAT-CCAG  937
      | |||||   ||||||||| |||||||||||||||||||| |||| ||||
seq2  ATTATTTTCTTTTTTGGGATTATTGTATATTAACTAAAAATTAATCCCAG  950

seq1  GCCATGAAAATT-GAAAGA-TCTATATTTGTTTTAGTCTGAGAGATG-TT  984
      |||||||||||| |||||| ||||||||||||||||||||||||||| ||
seq2  GCCATGAAAATTGGAAAGATTCTATATTTGTTTTAGTCTGAGAGATGTTT  1000

seq1  TTATCTGGCAAAATTCAACA-CTTTGTTTTTCAGTGTAAAGAATAG-CCC  1032
      |||||| |  |||||||||| ||||| ||||||||||||||||||| |||
seq2  TTATCTTGGCAAATTCAACACCTTTGGTTTTCAGTGTAAAGAATAGCCCC  1050

seq1  ATAAGACCAAGGTAGAC-TGAGTAAGA--TTTGCCATGAAAAGAAAAAAA  1079
      ||||||||||||||||| ||| |||||  ||||||| |||||||||||| 
seq2  ATAAGACCAAGGTAGACTTGAATAAGAATTTTGCCA-GAAAAGAAAAAAT  1099

seq1  GAATG-ATCAGTTGCCCCA--CCCTCTGTAGCCATTGACTGACTTG-GT-  1124
      ||||| |||||||||||||  ||||||||| ||||  |||||| || || 
seq2  GAATGTATCAGTTGCCCCAACCCCTCTGTATCCATGAACTGACCTGTGTG  1149

seq1  GAAT-GGGATGAAGAGGAGGG-TTAGAAAACAC  1155
      |||| ||||||||||| |||| | |||||||||
seq2  GAATGGGGATGAAGAGCAGGGCTCAGAAAACAC  1182

seq1: chr9_28253395_28254497
seq2: B6Ng01-180I07.g_65_1188 (reverse)

seq1  GGGGTAGACTAT-CAATGAGTAGAAAGGTTG-ACCTGGAATG-TTTCCAA  47
      |||||||||||| |||||||||| ||||||| |||||||||| |||||||
seq2  GGGGTAGACTATCCAATGAGTAG-AAGGTTGAACCTGGAATGTTTTCCAA  49

seq1  AG-ATGTC-GCTACC-TTGCTGTTGCATGGCTGCTT-GGTTTTAA-TCTT  92
      || ||||| |||||| |||||| ||||||||||||| ||| |||| ||||
seq2  AGAATGTCGGCTACCTTTGCTGGTGCATGGCTGCTTGGGTATTAATTCTT  99

seq1  G-GGCATGGTGGT-AGTC--ATATGCTT-GCCTCAAATAA-CCAGTTT-A  135
      | | ||||||||| ||||  |||||||| ||||||||||| ||||||| |
seq2  GAGCCATGGTGGTAAGTCATATATGCTTGGCCTCAAATAACCCAGTTTAA  149

seq1  TTCCTA-TTTCCCCTATTAAG-TTTTTCCATATGGAGTGTTCAT-AACT-  181
      |||||| |||||||||||||| |||||||||||||||||||||| |||| 
seq2  TTCCTATTTTCCCCTATTAAGTTTTTTCCATATGGAGTGTTCATAAACTC  199

seq1  CATTTTGAATCAGTGTCCATCTGTGCTGG-ATACAGTGCATGAAACAAGA  230
      ||||||||||||||||||||||||||||| ||||||||||||||  ||||
seq2  CATTTTGAATCAGTGTCCATCTGTGCTGGAATACAGTGCATGAACAAAGA  249

seq1  GTC-TTTGTAATTGGAATGACTCAGACAGGGAAGCCCAGAGATTTGCACT  279
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTAATTGGAATGACTCAGACAGGGAAGCCCAGAGATTTGCACT  299

seq1  TGTGACTCAGGGTTTCATCCT-AGCCCATTCCCCCATTGACTTTATCTCT  328
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TGTGACTCAGGGTTTCATCCTGGGCCCATTCCCCCATTGACTTTATCTCT  349

seq1  TACAGGGCATGCAGTCATGTGACAGCAATGTCAGGCTTCTTGAGATAGAT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCATGCAGTCATGTGACAGCAATGTCAGGCTTCTTGAGATAGAT  399

seq1  AGGGAAAAAACCCCTTATTTTATGAAGTTATAGATTTTGGCTTCCATCAT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAACCCCTTATTTTATGAAGTTATAGATTTTGGCTTCCATCAT  449

seq1  TTGTGGAATGAATAGTACTTGAATGTCTTCTTTCTCTGGTCAGCCTGTGA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAATGAATAGTACTTGAATGTCTTCTTTCTCTGGTCAGCCTGTGA  499

seq1  ACATGGCAGCTCACTAAAATGTCTACTATCTCTTTCTAACGTCTTACTTT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGCTCACTAAAATGTCTACTATCTCTTTCTAACGTCTTACTTT  549

seq1  CTTTCTCTTGTCCAATGTCAAAACTTTCTTTGGTTCTCTGATCATTGTCC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTGTCCAATGTCAAAACTTTCTTTGGTTCTCTGATCATTGTCC  599

seq1  CTGGGTTTTCAGTGAAGTGCACAGCAAAGAGCTGAGTAGCTGAGTCACAG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTCAGTGAAGTGCACAGCAAAGAGCTGAGTAGCTGAGTCACAG  649

seq1  AAATAACACTAATGCCATGATGCTCACTCTGCTCAGCACGCCTCAGTGCA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACTAATGCCATGATGCTCACTCTGCTCAGCACGCCTCAGTGCA  699

seq1  CATCCCACTCGCTGAAACTAATTGAGCTGTTAGCCTGCTCATCCCAAGCT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACTCGCTGAAACTAATTGAGCTGTTAGCCTGCTCATCCCAAGCT  749

seq1  CTGATTTCAACCATTCCCCTTAGGATGGCAGGGAGTTGGTTGTTTTGAGC  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCAACCATTCCCCTTAGGATGGCAGGGAGTTGGTTGTTTTGAGC  799

seq1  AGGTTCCCTTAGCTCACTCAATCATAGTAGACAGTGAAGGATGCTGGACT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCTTAGCTCACTCAATCATAGTAGACAGTGAAGGATGCTGGACT  849

seq1  CAGGTTCTCCAAAAGCAGGTAGGGCAATGTCCCATAACCCCTACCCACAG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTCCAAAAGCAGGTAGGGCAATGTCCCATAACCCCTACCCACAG  899

seq1  GTATTAGGACCATGAGCTCTGTTCTCCTTGTATTTCCCCTGTTCTTCCAG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGGACCATGAGCTCTGTTCTCCTTGTATTTCCCCTGTTCTTCCAG  949

seq1  TGGATAGCTTTCCACCAGAAATTAACATTTACAATTATCTTCATTTACAT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCTTTCCACCAGAAATTAACATTTACAATTATCTTCATTTACAT  999

seq1  AAACCATACATAAATTTACCTCAGCCTGGAGAGAGAAGGGCTTACATAAG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATACATAAATTTACCTCAGCCTGGAGAGAGAAGGGCTTACATAAG  1049

seq1  CCCACACCACCATAACTATGTGAAGTTGCTATCGTATTGGCTGCTCTTGT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCACCATAACTATGTGAAGTTGCTATCGTATTGGCTGCTCTTGT  1099

seq1  TCTGAAAGGCTTCAATAGAGAATTC  1103
      |||||||||||||||||||||||||
seq2  TCTGAAAGGCTTCAATAGAGAATTC  1124