BAC Information

Click to search

BAC

Clone NameB6Ng01-180K15
Chromosome9 (Build37)
Map Location 63,321,632 - 63,509,509
singlet/doubletdoublet
Overlap geneIqch, 2310007F21Rik, Smad3
Upstream geneCoro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, LOC621763
Downstream geneLOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180K15.bB6Ng01-180K15.g
ACCGA007034GA007035
length1,197602
definitionB6Ng01-180K15.b B6Ng01-180K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,321,632 - 63,322,855)(63,508,908 - 63,509,509)
sequence
gaattccttatagatcttgaaaacaaagataagaagctcttgcaaatgat
attaccagagggggactgagagagaagtattcattcattcatttaataaa
tatttattcagcatctattatctgccagacagggtgctaggtgctgggct
tacagaaatgaacaagaaggaattatgatgtttctgtagacctcgggttt
tgcatcctctgaaataaatgtattcatttctgatgcttatatatcacttt
gagatgataatgctcagtgagtttttaaaaataatgctaatttgattcag
attccacttacagttagagaacctgctgagggtctctgtgacagttttac
atgtgcttatggcatttgatttagtaacgacagcaccttgtatctatctg
ctcagcctctcagaacatcctctgagaaacagggaggaattttccacttg
ttaatgatagatcaaggcccagtgaattatctaaagtatcatactagcca
gagtgaagagaggctgaaatagcattacaatgaaatgttcttaggtgatt
tttctgtatgtagacacccacagaaacacttttcagaataaacggcttga
tatgcccatgaaaggtccctgatacaacctgcattcaaagatgggactct
cgggatataatatggcacacatgggtgaaaccatcagtggattgcatctc
tgactgtactagtgggaggtactggaactgtgaagggtggggcctagttg
ggagatgtaggttacttgagggtaaggcttgaaggatggagtttgtcctc
tagcccttgtgcatgatacttcagctttgcttcagacccacagcaatgga
gccaagtagccatagactaaagtctctgaaactgtactctaaagtaaata
tttcttcccctcacattctttttctcataaatcagcagcagaagcatata
gtctgatatacaccaggaactccatttttgtcgttcctcacaatttcccc
ttgtgatagtcatcttttctgattgtcctatgatgagggggccattacta
gcacttgtagccatttttcattcagattttttctaaagattgattggtcc
catatcctcttcctgtcttctgcaggatcctggtcctggcctaatgctgt
gggctctgcactgtccataagtgctgatagccttctgttgatgattg
gaattccacctcacccccccaaccacaacgtgaggttgccggtatgctga
aggggtcgcggtggggtcttcatggcagctccctagaggtaatctggcca
ctgtatagagtatgcatttgataagaagttactggagaagaagcagaggg
aaacccaagtagttggtggctaccctgagggaagttggaatgaaccggat
gggacaaacctcagagaggcctgccctcccgaggtgtgaggggcctggag
aaaattgaccgaggttgctctgccttacagcctccctggggagtcaggga
ggctggggtccaaggcccagagtggcaaccattgcttcatgtctgctgtt
ggtccaaggggagggcattgttacaaagcacacaaggcctatgtgaagcc
ttttccaaccaagtcctacggtaggtagcatagaatacctccaagaaagg
gggaaatcccttccattttgtggccttcccacaatcaggtggctgctagg
aacttctcttccttatccactgatcattccagcaagtccaatcaaagaac
agcattgaaaggcttgtctgacatcatgggagtaggtaggattggggaga
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_63321632_63322855
seq2: B6Ng01-180K15.b_42_1238

seq1  GAATTCCTTATAGATCTTGAAAACAAAGATAAGAAGCTCTTGCAAATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATAGATCTTGAAAACAAAGATAAGAAGCTCTTGCAAATGAT  50

seq1  ATTACCAGAGGGGGACTGAGAGAGAAGTATTCATTCATTCATTTAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGAGGGGGACTGAGAGAGAAGTATTCATTCATTCATTTAATAAA  100

seq1  TATTTATTCAGCATCTATTATCTGCCAGACAGGGTGCTAGGTGCTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTCAGCATCTATTATCTGCCAGACAGGGTGCTAGGTGCTGGGCT  150

seq1  TACAGAAATGAACAAGAAGGAATTATGATGTTTCTGTAGACCTCGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAATGAACAAGAAGGAATTATGATGTTTCTGTAGACCTCGGGTTT  200

seq1  TGCATCCTCTGAAATAAATGTATTCATTTCTGATGCTTATATATCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTCTGAAATAAATGTATTCATTTCTGATGCTTATATATCACTTT  250

seq1  GAGATGATAATGCTCAGTGAGTTTTTAAAAATAATGCTAATTTGATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATAATGCTCAGTGAGTTTTTAAAAATAATGCTAATTTGATTCAG  300

seq1  ATTCCACTTACAGTTAGAGAACCTGCTGAGGGTCTCTGTGACAGTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTTACAGTTAGAGAACCTGCTGAGGGTCTCTGTGACAGTTTTAC  350

seq1  ATGTGCTTATGGCATTTGATTTAGTAACGACAGCACCTTGTATCTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTATGGCATTTGATTTAGTAACGACAGCACCTTGTATCTATCTG  400

seq1  CTCAGCCTCTCAGAACATCCTCTGAGAAACAGGGAGGAATTTTCCACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCTCAGAACATCCTCTGAGAAACAGGGAGGAATTTTCCACTTG  450

seq1  TTAATGATAGATCAAGGCCCAGTGAATTATCTAAAGTATCATACTAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATAGATCAAGGCCCAGTGAATTATCTAAAGTATCATACTAGCCA  500

seq1  GAGTGAAGAGAGGCTGAAATAGCATTACAATGAAATGTTCTTAGGTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGAGAGGCTGAAATAGCATTACAATGAAATGTTCTTAGGTGATT  550

seq1  TTTCTGTATGTAGACACCCACAGAAACACTTTTCAGAATAAACGGCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATGTAGACACCCACAGAAACACTTTTCAGAATAAACGGCTTGA  600

seq1  TATGCCCATGAAAGGTCCCTGATACAACCTGCATTCAAAGATGGGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCATGAAAGGTCCCTGATACAACCTGCATTCAAAGATGGGACTCT  650

seq1  CGGGATATAATATGGCACACATGGGTGAAACCATCAGTGGATTGCATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATATAATATGGCACACATGGGTGAAACCATCAGTGGATTGCATCTC  700

seq1  TGACTGTACTAGTGGGAGGTACTGGAACTGTGAAGGGTGGGGCCTAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTACTAGTGGGAGGTACTGGAACTGTGAAGGGTGGGGCCTAGTTG  750

seq1  GGAGATGTAGGTTACTTGAGGGTAAGGCTTGAAGGATGGAGTTTGTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTAGGTTACTTGAGGGTAAGGCTTGAAGGATGGAGTTTGTCCTC  800

seq1  TAGCCCTTGTGCATGATACTTCAGCTTTGCTTCAGACCCACAGCAATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTGTGCATGATACTTCAGCTTTGCTTCAGACCCACAGCAATGGA  850

seq1  GCCAAGTAGCCATAGACTAAAGTCTCTGAAACTGTACTCTAAAGTAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTAGCCATAGACTAAAGTCTCTGAAACTGTACTCTAAAGTAAATA  900

seq1  TTTCTTCCCCTCACATTCTTTTTCTCATAAATCAGCAGCAGAAGCATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCCTCACATTCTTTTTCTCATAAATCAGCAGCAGAAGCATATA  950

seq1  GTCTGATATACACCAGGAACTCCATTTTTGTCGTTCCTCACAATTTTCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCTGATATACACCAGGAACTCCATTTTTGTCGTTCCTCACAA-TTTCCC  999

seq1  CTTGTGATAAGTCATCTTTTCTGATTGTCCTATTGATGAGGGGGCCATTA  1050
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  CTTGTGAT-AGTCATCTTTTCTGATTGTCCTA-TGATGAGGGGGCCATTA  1047

seq1  CTAAGCACTTGTAGCCATTTTTCATTTCAGATTTTTTCTTAAAGATTGGA  1100
      || ||||||||||||||||||||| ||||||||||||| |||||||| ||
seq2  CT-AGCACTTGTAGCCATTTTTCA-TTCAGATTTTTTC-TAAAGATT-GA  1093

seq1  TTTGGGTCCCATAATCCTTCCTCCCTGTCTTCTGCAGGATTCCCTGGGCT  1150
      ||  |||||||| |||||  || |||||||||||||||||  ||||| | 
seq2  TT--GGTCCCAT-ATCCT--CTTCCTGTCTTCTGCAGGAT--CCTGGTC-  1135

seq1  CTGCCTTAGTTTGGCTGTGGGTCTCTGCATCTGCTCCTATTAGTTGCTGG  1200
      ||| | || |   |||||||| ||||||| ||| ||| || || |||| |
seq2  CTGGCCTAAT---GCTGTGGG-CTCTGCA-CTG-TCC-ATAAG-TGCT-G  1176

seq1  ATGAAGTCTCTCTGTTGATGATTG  1224
      ||  || || ||||||||||||||
seq2  AT--AGCCT-TCTGTTGATGATTG  1197

seq1: chr9_63508908_63509509
seq2: B6Ng01-180K15.g_69_670 (reverse)

seq1  CCTCTCCCCAATCCTACCTACTCCCATGATGTCAGACAAGCCTTTCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCAATCCTACCTACTCCCATGATGTCAGACAAGCCTTTCAATG  50

seq1  CTGTTCTTTGATTGGACTTGCTGGAATGATCAGTGGATAAGGAAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTGATTGGACTTGCTGGAATGATCAGTGGATAAGGAAGAGAAG  100

seq1  TTCCTAGCAGCCACCTGATTGTGGGAAGGCCACAAAATGGAAGGGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCAGCCACCTGATTGTGGGAAGGCCACAAAATGGAAGGGATTTC  150

seq1  CCCCTTTCTTGGAGGTATTCTATGCTACCTACCGTAGGACTTGGTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTTGGAGGTATTCTATGCTACCTACCGTAGGACTTGGTTGGAA  200

seq1  AAGGCTTCACATAGGCCTTGTGTGCTTTGTAACAATGCCCTCCCCTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCACATAGGCCTTGTGTGCTTTGTAACAATGCCCTCCCCTTGGA  250

seq1  CCAACAGCAGACATGAAGCAATGGTTGCCACTCTGGGCCTTGGACCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCAGACATGAAGCAATGGTTGCCACTCTGGGCCTTGGACCCCAG  300

seq1  CCTCCCTGACTCCCCAGGGAGGCTGTAAGGCAGAGCAACCTCGGTCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGACTCCCCAGGGAGGCTGTAAGGCAGAGCAACCTCGGTCAATT  350

seq1  TTCTCCAGGCCCCTCACACCTCGGGAGGGCAGGCCTCTCTGAGGTTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGGCCCCTCACACCTCGGGAGGGCAGGCCTCTCTGAGGTTTGTC  400

seq1  CCATCCGGTTCATTCCAACTTCCCTCAGGGTAGCCACCAACTACTTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGGTTCATTCCAACTTCCCTCAGGGTAGCCACCAACTACTTGGGT  450

seq1  TTCCCTCTGCTTCTTCTCCAGTAACTTCTTATCAAATGCATACTCTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTGCTTCTTCTCCAGTAACTTCTTATCAAATGCATACTCTATAC  500

seq1  AGTGGCCAGATTACCTCTAGGGAGCTGCCATGAAGACCCCACCGCGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAGATTACCTCTAGGGAGCTGCCATGAAGACCCCACCGCGACCC  550

seq1  CTTCAGCATACCGGCAACCTCACGTTGTGGTTGGGGGGGTGAGGTGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCATACCGGCAACCTCACGTTGTGGTTGGGGGGGTGAGGTGGAAT  600

seq1  TC  602
      ||
seq2  TC  602