BAC Information

Click to search

BAC

Clone NameB6Ng01-180P19
Chromosome9 (Build37)
Map Location 96,356,187 - 96,499,416
singlet/doubletdoublet
Overlap geneRnf7, LOC667174, Rasa2
Upstream gene2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934
Downstream geneZbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180P19.bB6Ng01-180P19.g
ACCGA007276GA007277
length7471,009
definitionB6Ng01-180P19.b B6Ng01-180P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,356,187 - 96,356,928)(96,498,406 - 96,499,416)
sequence
gaattcaattatgtaaaagccatgatacagtgcgctgaaaagctattata
cagtcaggcaccagctgtaatgtgggggaagagcaattaacgctcccgtc
tgcggggaatgtcagtcttaaaccaagtgttttcctattaactgcaagca
ttgtctgacgattcacaggcatggactcggtctgagtgagttgttactgc
atgcaacaaaaactgagaccagaaaaaaaaaatgtaaccttagcctcaga
ctaggaactcagcgtctagcttctcaatccgggcccatttcacagtgcac
cctccctgcagagagcaggcttgagataactgagtccagtctgacaccac
aaagagaaccggggttgcgtttacaagtgataccacggcgacatatcggc
gcccgtggaaatggcacagctttcctcggaggcctcaaggtacgactgac
catactgtggcatagagctaacagccgaggtcctgactcctcccttcaac
agccacagtctctgtgcagctaaagaaaaagcctttctgtgggaagcctg
atcgcttggtaattcatacaagaacggagagtaagaaactaggctcttta
aaagctcacacgtggaactggagagatggctcagccattaagagcactga
cttctcttccagttccccagcaaccacatgggaggctcacaactatcttg
taatggaatccaatgccctcttctgggtgtgtctgaaagatagcaac
gaattcaacagattagaattgctcagggagcatcaaaatataagaacaga
agcctacccaaattagtgggcaaaggggaatgcattagaaagtgtgtagg
gagctgtttgaagtcaaattacaggaacttcctcgggaatgtgagctaca
tagttcccagacatttgcacagatacttcgtggtaatggcagttaggttc
tgacagtagcacacaagatagaaattcacataagttaaaaatgatccttg
aagtgactaagtcttcataacatggttgactgccacagagaacattagtt
tttatctggggctttgatgaacaaacgctgtgtagtgtcattcttagcag
tagccccaactcggcagcaatgtactgtaaggcaggtgagacctgtgatc
cactggttgatttttttcatgtttgtggcttttcatttttcattttgaaa
aaggaatagttatgttttcttctttcactctcttttaaataactatatac
ttgcaaaataaagagtgtagccgtgaattagttaaaccgctttggctcct
agcaggttgcgctctcactgtacccgcccaagagctcagattcccaaata
aaagacaaacacacacatgccagttaattttgatatgctttgactagctg
aatggctggacacttctaaacctccccatggctagcaaacactcccctct
gatatttctgagttaacatctttaaaaatctgtatttcatctctgctacc
ccagacccaagtggggaagtggcccagatacttatttgcctgcaggccta
taagtttcatctttttgcttccccatccttgggtcccttgtccacacaag
tctcgccccatctccctgtccaaccattggctgcacagcaattcttcatt
atcagtcaaagccagtaggggcaaggaatcctcaggtatgaagaaagcat
gactttgggaagccaaataagatcaaacattagaaccaattttcaacaaa
agagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96356187_96356928
seq2: B6Ng01-180P19.b_48_794

seq1  GAATTCAATTATGTAAAAGCCATGATACAGTGCGCTGAAAAGCTATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATGTAAAAGCCATGATACAGTGCGCTGAAAAGCTATTATA  50

seq1  CAGTCAGGCACCAGCTGTAATGTGGGGGAAGAGCAATTAACGCTCCCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGCACCAGCTGTAATGTGGGGGAAGAGCAATTAACGCTCCCGTC  100

seq1  TGCGGGGAATGTCAGTCTTAAACCAAGTGTTTTCCTATTAACTGCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGAATGTCAGTCTTAAACCAAGTGTTTTCCTATTAACTGCAAGCA  150

seq1  TTGTCTGACGATTCACAGGCATGGACTCGGTCTGAGTGAGTTGTTACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGACGATTCACAGGCATGGACTCGGTCTGAGTGAGTTGTTACTGC  200

seq1  ATGCAACAAAAACTGAGACCAGAAAAAAAAAATGTAACCTTAGCCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAAAAACTGAGACCAGAAAAAAAAAATGTAACCTTAGCCTCAGA  250

seq1  CTAGGAACTCAGCGTCTAGCTTCTCAATCCGGGCCCATTTCACAGTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACTCAGCGTCTAGCTTCTCAATCCGGGCCCATTTCACAGTGCAC  300

seq1  CCTCCCTGCAGAGAGCAGGCTTGAGATAACTGAGTCCAGTCTGACACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCAGAGAGCAGGCTTGAGATAACTGAGTCCAGTCTGACACCAC  350

seq1  AAAGAGAACCGGGGTTGCGTTTACAAGTGATACCACGGCGACATATCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACCGGGGTTGCGTTTACAAGTGATACCACGGCGACATATCGGC  400

seq1  GCCCGTGGAAATGGCACAGCTTTCCTCGGAGGCCTCAAGGTACGACTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGGAAATGGCACAGCTTTCCTCGGAGGCCTCAAGGTACGACTGAC  450

seq1  CATACTGTGGCATAGAGCTAACAGCCGAGGTCCTGACTCCTCCCTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTGGCATAGAGCTAACAGCCGAGGTCCTGACTCCTCCCTTCAAC  500

seq1  AGCCACAGTCTCTGTGCAGCTAAAGAAAAAGCCTTTCTGTGGGAAGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGTCTCTGTGCAGCTAAAGAAAAAGCCTTTCTGTGGGAAGCCTG  550

seq1  ATCGCTTGGTAATTCATACAAGAACGGAGAGTAAGAAACTAGGCTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTGGTAATTCATACAAGAACGGAGAGTAAGAAACTAGGCTCTTTA  600

seq1  AAAGCTCACACGTGGAACTGGAGAGATGGCTCAGCCATTAAGAGCACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCACACGTGGAACTGGAGAGATGGCTCAGCCATTAAGAGCACTGA  650

seq1  CTTCTCTTCCAGTT-CCCAGCAACCACAT-GGAGGCTCACAACTATC-TG  697
      |||||||||||||| |||||||||||||| ||||||||||||||||| ||
seq2  CTTCTCTTCCAGTTCCCCAGCAACCACATGGGAGGCTCACAACTATCTTG  700

seq1  TAATGGAATCCAATGCCCTCTTCT-GGTGTGTCTG-AAGACAGCAAC  742
      |||||||||||||||||||||||| |||||||||| |||| ||||||
seq2  TAATGGAATCCAATGCCCTCTTCTGGGTGTGTCTGAAAGATAGCAAC  747

seq1: chr9_96498406_96499416
seq2: B6Ng01-180P19.g_71_1079 (reverse)

seq1  TTTTTCTCTTTTGTTGGAAATTGGTTCTAATGTTTGGTCTTATTTTGGCT  50
      |||||||||||||||| ||||||||||||||||||| ||||| |||||||
seq2  TTTTTCTCTTTTGTTGAAAATTGGTTCTAATGTTTGATCTTA-TTTGGCT  49

seq1  TCCAAAAGTCATGCTTTCTTCATACCTGAGGATTCCTGCCCCCTACTGGC  100
      ||| |||||||||||||||||||||||||||||||||  |||||||||||
seq2  TCCCAAAGTCATGCTTTCTTCATACCTGAGGATTCCTTGCCCCTACTGGC  99

seq1  TTTGACTGATAATGAAGAATTGCTGTGCAGCCAATGGTTGGACAGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGATAATGAAGAATTGCTGTGCAGCCAATGGTTGGACAGGGAGA  149

seq1  TGGGGCGAGACTTGTGTGGACAAGGGACCCAAGGATGGGGAAGCAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGAGACTTGTGTGGACAAGGGACCCAAGGATGGGGAAGCAAAAAG  199

seq1  ATGAAACTTATAGGCCTGCAGGCAAATAAGTATCTGGGGCCACTTCCCCA  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAAACTTATAGGCCTGCAGGCAAATAAGTATCT-GGGCCACTTCCCCA  248

seq1  CTTGGGTCTGGGGTAGCAGAGATGAAATACAGATTTTTAAAGATGTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCTGGGGTAGCAGAGATGAAATACAGATTTTTAAAGATGTTAAC  298

seq1  TCAGAAATATCAGAGGGGAGTGTTTGCTAGCCATGGGGAGGTTTAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATATCAGAGGGGAGTGTTTGCTAGCCATGGGGAGGTTTAGAAGT  348

seq1  GTCCAGCCATTCAGCTAGTCAAAGCATATCAAAATTAACTGGCATGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCCATTCAGCTAGTCAAAGCATATCAAAATTAACTGGCATGTGTG  398

seq1  TGTTTGTCTTTTATTTGGGAATCTGAGCTCTTGGGCGGGTACAGTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTTTTATTTGGGAATCTGAGCTCTTGGGCGGGTACAGTGAGAG  448

seq1  CGCAACCTGCTAGGAGCCAAAGCGGTTTAACTAATTCACGGCTACACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACCTGCTAGGAGCCAAAGCGGTTTAACTAATTCACGGCTACACTCT  498

seq1  TTATTTTGCAAGTATATAGTTATTTAAAAGAGAGTGAAAGAAGAAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGCAAGTATATAGTTATTTAAAAGAGAGTGAAAGAAGAAAACAT  548

seq1  AACTATTCCTTTTTCAAAATGAAAAATGAAAAGCCACAAACATGAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCCTTTTTCAAAATGAAAAATGAAAAGCCACAAACATGAAAAAA  598

seq1  ATCAACCAGTGGATCACAGGTCTCACCTGCCTTACAGTACATTGCTGCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCAGTGGATCACAGGTCTCACCTGCCTTACAGTACATTGCTGCCG  648

seq1  AGTTGGGGCTACTGCTAAGAATGACACTACACAGCGTTTGTTCATCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGCTACTGCTAAGAATGACACTACACAGCGTTTGTTCATCAAAG  698

seq1  CCCCAGATAAAAACTAATGTTCTCTGTGGCAGTCAACCATGTTATGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATAAAAACTAATGTTCTCTGTGGCAGTCAACCATGTTATGAAGA  748

seq1  CTTAGTCACTTCAAGGATCATTTTTAACTTATGTGAATTTCTATCTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCACTTCAAGGATCATTTTTAACTTATGTGAATTTCTATCTTGTG  798

seq1  TGCTACTGTCAGAACCTAACTGCCATTACCACGAAGTATCTGTGCAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGTCAGAACCTAACTGCCATTACCACGAAGTATCTGTGCAAATG  848

seq1  TCTGGGAACTATGTAGCTCACATTCCCGAGGAAGTTCCTGTAATTTGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAACTATGTAGCTCACATTCCCGAGGAAGTTCCTGTAATTTGACT  898

seq1  TCAAACAGCTCCCTACACACTTTCTAATGCATTCCCCTTTGCCCACTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGCTCCCTACACACTTTCTAATGCATTCCCCTTTGCCCACTAAT  948

seq1  TTGGGTAGGCTTCTGTTCTTATATTTTGATGCTCCCTGAGCAATTCTAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAGGCTTCTGTTCTTATATTTTGATGCTCCCTGAGCAATTCTAAT  998

seq1  CTGTTGAATTC  1011
      |||||||||||
seq2  CTGTTGAATTC  1009