BAC Information

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BAC

Clone NameB6Ng01-181G20
Chromosome9 (Build37)
Map Location 122,927,489 - 123,129,650
singlet/doubletdoublet
Overlap geneKif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1
Upstream geneLOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik
Downstream geneTmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181G20.bB6Ng01-181G20.g
ACCGA007592GA007593
length1,068655
definitionB6Ng01-181G20.b B6Ng01-181G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,128,604 - 123,129,650)(122,927,489 - 122,928,142)
sequence
gaattctagaaaagccaggggtagaggtagaaagtctgccttgaaaaaca
aaaacaagaataaaaccaaactaaacaaatttccctaaactgttttatta
taatctgtttctgttccatagctacaatgttacctatatcttgctaaggg
agttagcaatcatttttatctgactttgctctttcatcttctcctatata
gtctttccccaccatgctactttatcttgtttaataagtcaattttcaaa
gttttcctcagatggcagatgtggtcagagtttagaagtgagagatagac
gaatgagctaggaacttcatggaaggagctggccagctcacctagggtcc
gtcagtggtctgctcagatttggaaaacatccagcaggtaggaggagcag
ttggcaggcgctggactcccagcattctagatgcatacattttctgaatc
tatctttagaacacttccaggccctcagctatgccagcagctctgagcac
agatcttgagaattctttgtctccagaagcagttgctcagccaggaagaa
ggcaggaaacggctccagcagctaactataggacttctctgcagcctccc
ctattttagcagcaatagctaaaaacatcttcttaacccgagttccggaa
ttggagctgccattttcctgagtggattttcttttcttttcttcttttct
tttctcttgaggattttcacagtgtaaatcctgttatcaacctcccccta
gctagattgggattctactttctctcttgcttcccaaggctggtttacag
cctgttcattctctttccagcctctaggatcaattttgctgctgtctttc
ttctctgcctgtctaaacttctgtgcttttaaatcttctgttctttttaa
ccttttgaagaagagttccagaagaagttcagaacctactctgaagacgt
tttcagaagtggagattcgataggtctatcctattcctatgttcctctat
tttctttattgaagacagtcctcactatgttaacaggctgccctcaaacc
ttggtgaatccctcctgc
gaattctagtcaggtccttttcttctttttttatttactttattttattt
tttttttttttggttttttgagacagggtttctctgtatagctctggctg
tcttggaactaactaactctgtagtccagcctggcctcgaactcagaaat
ctgcctgcctctgcctcccgagtgctgggattaaaggtgtgcgccaccac
ggccagtgggtccttttcttcttagattcgcctttgataaactcgctgtg
aatccgatggctgttttgtattgaacttgttcatatatattggtttgttt
tgtaactgttatggccattttctacatgtccagtttttcaaataaaatct
tttttaaaaacaatgtgtataaatactatgcctttgtgtatgtacatgta
ccacatgtgtgcctagcaccctttgaggtcagaagagggtgtcagatctc
ctagaattagttattagtggttgtgagccaccattccagtactgagaacc
aaacccaggccctctgcaagaacaagtgttttttaatctcttagctaact
ctccagccctagttttgagggctatcttagtcggggtttctattcctgca
caaacatcatgaccaagacgcaagatggggaggaaagggtttattcagct
tacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_123128604_123129650
seq2: B6Ng01-181G20.b_43_1110 (reverse)

seq1  GCAGGAGG--ATCAC--AGGTTTGAGGGCAGCCTG-TGACATAGTGA-GA  44
      ||||||||   ||||  |||||||||||||||||| | ||||||||| ||
seq2  GCAGGAGGGATTCACCAAGGTTTGAGGGCAGCCTGTTAACATAGTGAGGA  50

seq1  CTGTC-TCAAATAAGAAAATAGAG--ACATA-GAATAGGATAGA-CTATC  89
      ||||| ||||  ||||||||||||  ||||| |||||||||||| |||||
seq2  CTGTCTTCAATAAAGAAAATAGAGGAACATAGGAATAGGATAGACCTATC  100

seq1  GAATCT-CACTTCTG-AAACGTCTTCAGAGTATG-TCTG-ACTTCTTCTG  135
      |||||| |||||||| |||||||||||||||| | |||| ||||||||||
seq2  GAATCTCCACTTCTGAAAACGTCTTCAGAGTAGGTTCTGAACTTCTTCTG  150

seq1  GAACTCTTCTTC-AAAGGTT-AAAAGAACAGAGATTTTAAAAGCACAGAA  183
      |||||||||||| ||||||| |||||||||||   |||||||||||||||
seq2  GAACTCTTCTTCAAAAGGTTAAAAAGAACAGAAGATTTAAAAGCACAGAA  200

seq1  GTTTAGACAGGCAGAGAAGAAAGACAGCAGCAAAATTGATCCTAGAGGCT  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGACAGGCAGAGAAGAAAGACAGCAGCAAAATTGATCCTAGAGGCT  250

seq1  GGAAAGAGAATGAACAGGCTGTAAACCAGCCTTGGG-AGC-AGAGAGAAA  281
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  GGAAAGAGAATGAACAGGCTGTAAACCAGCCTTGGGAAGCAAGAGAGAAA  300

seq1  GTAGAATCCCAATCTAGCTAGGGGGAGGTTGATAACAGGATTTACACTGT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCCCAATCTAGCTAGGGGGAGGTTGATAACAGGATTTACACTGT  350

seq1  G-AAATCCTCAAGAGAAAAGAAAAGAAGAAAAGAAAAGAAAATCCACTCA  380
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCTCAAGAGAAAAGAAAAGAAGAAAAGAAAAGAAAATCCACTCA  400

seq1  GG-AAATGGCAGCTCCAATTCCGGAACTCGGGTTAAGAAGATGTTTTTAG  429
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGCAGCTCCAATTCCGGAACTCGGGTTAAGAAGATGTTTTTAG  450

seq1  CTATTGCTGCTAAAATAGGGGAGGCTGCAGAGAAGTCCTATAGTTAGCTG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTGCTAAAATAGGGGAGGCTGCAGAGAAGTCCTATAGTTAGCTG  500

seq1  CTGGAGCCGTTTCCTGCCTTCTTCCTGGCTGAGCAACTGCTTCTGGAGAC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCGTTTCCTGCCTTCTTCCTGGCTGAGCAACTGCTTCTGGAGAC  550

seq1  AAAGAATTCTCAAGATCTGTGCTCAGAGCTGCTGGCATAGCTGAGGGCCT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCTCAAGATCTGTGCTCAGAGCTGCTGGCATAGCTGAGGGCCT  600

seq1  GGAAGTGTTCTAAAGATAGATTCAGAAAATGTATGCATCTAGAATGCTGG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTTCTAAAGATAGATTCAGAAAATGTATGCATCTAGAATGCTGG  650

seq1  GAGTCCAGCGCCTGCCAACTGCTCCTCCTACCTGCTGGATGTTTTCCAAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGCGCCTGCCAACTGCTCCTCCTACCTGCTGGATGTTTTCCAAA  700

seq1  TCTGAGCAGACCACTGACGGACCCTAGGTGAGCTGGCCAGCTCCTTCCAT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAGACCACTGACGGACCCTAGGTGAGCTGGCCAGCTCCTTCCAT  750

seq1  GAAGTTCCTAGCTCATTCGTCTATCTCTCACTTCTAAACTCTGACCACAT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCTAGCTCATTCGTCTATCTCTCACTTCTAAACTCTGACCACAT  800

seq1  CTGCCATCTGAGGAAAACTTTGAAAATTGACTTATTAAACAAGATAAAGT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATCTGAGGAAAACTTTGAAAATTGACTTATTAAACAAGATAAAGT  850

seq1  AGCATGGTGGGGAAAGACTATATAGGAGAAGATGAAAGAGCAAAGTCAGA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTGGGGAAAGACTATATAGGAGAAGATGAAAGAGCAAAGTCAGA  900

seq1  TAAAAATGATTGCTAACTCCCTTAGCAAGATATAGGTAACATTGTAGCTA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGATTGCTAACTCCCTTAGCAAGATATAGGTAACATTGTAGCTA  950

seq1  TGGAACAGAAACAGATTATAATAAAACAGTTTAGGGAAATTTGTTTAGTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGAAACAGATTATAATAAAACAGTTTAGGGAAATTTGTTTAGTT  1000

seq1  TGGTTTTATTCTTGTTTTTGTTTTTCAAGGCAGACTTTCTACCTCTACCC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATTCTTGTTTTTGTTTTTCAAGGCAGACTTTCTACCTCTACCC  1050

seq1  CTGGCTTTTCTAGAATTC  1047
      ||||||||||||||||||
seq2  CTGGCTTTTCTAGAATTC  1068

seq1: chr9_122927489_122928142
seq2: B6Ng01-181G20.g_69_723

seq1  GAATTCTAGTCAGGTCCTTTTCTTCTTTTTTTATTTACTTTATTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCAGGTCCTTTTCTTCTTTTTTTATTTACTTTATTTTATTT  50

seq1  TTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTG  100

seq1  TCTTGGAACTAACTAACTCTGTAGTCCAGCCTGGCCTCGAACTCAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAACTAACTAACTCTGTAGTCCAGCCTGGCCTCGAACTCAGAAAT  150

seq1  CTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCAC  200

seq1  GGCCAGTGGGTCCTTTTCTTCTTAGATTCGCCTTTGATAAACTCGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGGGTCCTTTTCTTCTTAGATTCGCCTTTGATAAACTCGCTGTG  250

seq1  AATCCGATGGCTGTTTTGTATTGAACTTGTTCATATATATTGGTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGATGGCTGTTTTGTATTGAACTTGTTCATATATATTGGTTTGTTT  300

seq1  TGTAACTGTTATGGCCATTTTCTACATGTCCAGTTTTTCAAATAAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGTTATGGCCATTTTCTACATGTCCAGTTTTTCAAATAAAATCT  350

seq1  TTTTTAAAAACAATGTGTATAAATACTATGCCTTTGTGTATGTACATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAACAATGTGTATAAATACTATGCCTTTGTGTATGTACATGTA  400

seq1  CCACATGTGTGCCTAGCACCCTTTGAGGTCAGAAGAGGGTGTCAGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGTGTGCCTAGCACCCTTTGAGGTCAGAAGAGGGTGTCAGATCTC  450

seq1  CTAGAATTAGTTATTAGTGGTTGTGAGCCACCATTCCAGTACTGAGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTAGTTATTAGTGGTTGTGAGCCACCATTCCAGTACTGAGAACC  500

seq1  AAACCCAGGCCCTCTGCAAGAACAAGTG-TTTTTAATCTCTTAGCTAACT  549
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAACCCAGGCCCTCTGCAAGAACAAGTGTTTTTTAATCTCTTAGCTAACT  550

seq1  CTCCAGCCCTAGTTTTGAGGGCTATCTTAGTCGGGGTTTCTATTCCTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCTAGTTTTGAGGGCTATCTTAGTCGGGGTTTCTATTCCTGCA  600

seq1  CAAACATCATGACCAAGACGCAAGATGGGGAGGAAAGGGTTTATTCAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCATGACCAAGACGCAAGATGGGGAGGAAAGGGTTTATTCAGCT  650

seq1  TACAC  654
      |||||
seq2  TACAC  655