MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-182J19
Chromosome	9 (Build37)
Map Location	53,372,613 - 53,483,120
singlet/doublet	doublet
Overlap gene	Npat, Acat1, Cul5
Upstream gene	AI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm
Downstream gene	Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1
Link	Open Mouse BAC browser

Click to get alignment info.

name	AI593442 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330941 MGI:2143099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gm1715 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382139 MGI:2686561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Ddx10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77591 MGI:1924841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 145 ESTs, 7 Proteins

name	Exph5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320051 MGI:2443248
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kdelc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68304 MGI:1923765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930550C14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75311 MGI:1922561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11920 MGI:107202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244879 MGI:107605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110446 MGI:87870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cul5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75717 MGI:1922967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270160 MGI:2442855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434404 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434404 MGI:3643565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 1756 ESTs, 7 Proteins

name	LOC100038958 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Slc35f2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72022 MGI:1919272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sln (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66402 MGI:1913652
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038996 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038996
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 40 ESTs, 1 Protein

name	Elmod1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270162 MGI:3583900
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfaip8l3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244882 MGI:2685363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyp19a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13075 MGI:88587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039064 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039064
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Gldn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235379 MGI:2388361
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dmxl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235380 MGI:2444630
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 97 ESTs, 2 Proteins

name	4933412E14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244885 MGI:2441692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cib2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56506 MGI:1929293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Idh3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67834 MGI:1915084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acsbg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94180 MGI:2385656
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI593442 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342698 GeneID:330941 MGI:2143099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI593442 transcript_id : NM_177907.2

name	AI593442 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381639 GeneID:330941 MGI:2143099
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI593442 transcript_id : NM_178906.3

name	Gm1715 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259934 GeneID:382139 MGI:2686561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : gene model 1715, (NCBI) transcript_id : XM_001478987.1

name	Ddx10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386109 GeneID:77591 MGI:1924841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 145 ESTs, 7 Proteins product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 transcript_id : XM_284494.5

name	Exph5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341147 GeneID:320051 MGI:2443248
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exophilin 5 transcript_id : NM_176846.2

name	Kdelc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55956900 GeneID:68304 MGI:1923765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : KDEL (Lys-Asp-Glu-Leu) containing 2 transcript_id : NM_212445.2

name	4930550C14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802091 GeneID:75311 MGI:1922561
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930550C14 gene transcript_id : NM_029247.2

name	Atm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680739 GeneID:11920 MGI:107202
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ataxia telangiectasia mutated homolog (human) transcript_id : NM_007499.1

name	Npat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487234 GeneID:244879 MGI:107605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear protein in the AT region transcript_id : NM_001081152.1

name	Acat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130035 GeneID:110446 MGI:87870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acetyl-Coenzyme A acetyltransferase 1 transcript_id : NM_144784.3

name	Cul5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343675 GeneID:75717 MGI:1922967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cullin 5 transcript_id : NM_027807.2

name	Rab39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891651 GeneID:270160 MGI:2442855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB39, member RAS oncogene family transcript_id : NM_175562.3

name	EG434404 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259968 GeneID:434404 MGI:3643565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 1756 ESTs, 7 Proteins product : predicted gene, EG434404 transcript_id : XM_486222.5

name	LOC100038958 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259970 GeneID:100038958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to Ubtf protein transcript_id : XM_001471979.1

name	Slc35f2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254174 GeneID:72022 MGI:1919272
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 35, member F2 transcript_id : NM_028060.2

name	Sln (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124376991 GeneID:66402 MGI:1913652
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sarcolipin transcript_id : NM_025540.2

name	LOC100038996 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259972 GeneID:100038996
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 40 ESTs, 1 Protein product : similar to proapoptotic protein transcript_id : XM_001472003.1

name	Elmod1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922692 GeneID:270162 MGI:3583900
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELMO domain containing 1 transcript_id : NM_177769.4

name	Tnfaip8l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373761 GeneID:244882 MGI:2685363
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor, alpha-induced protein 8-like 3 transcript_id : NM_001033535.2

name	Cyp19a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373634 GeneID:13075 MGI:88587
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome P450, family 19, subfamily a, polypeptide 1 transcript_id : NM_007810.2

name	Gldn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366344 GeneID:235379 MGI:2388361
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gliomedin transcript_id : NM_177350.3

name	Dmxl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386111 GeneID:235380 MGI:2444630
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 97 ESTs, 2 Proteins product : Dmx-like 2 transcript_id : XM_358382.5

name	4933412E14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802668 GeneID:244885 MGI:2441692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933412E14 gene transcript_id : NM_173778.3

name	Cib2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364837 GeneID:56506 MGI:1929293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium and integrin binding family member 2 transcript_id : NM_019686.4

name	Idh3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560055 GeneID:67834 MGI:1915084
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : isocitrate dehydrogenase 3 (NAD+) alpha transcript_id : NM_029573.2

name	Acsbg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891660 GeneID:94180 MGI:2385656
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase bubblegum family member 1 transcript_id : NM_053178.2

name	AI593442 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244544 GeneID:330941 MGI:2143099
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC330941 isoform 1 protein_id : NP_808575.1

name	AI593442 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725766 GeneID:330941 MGI:2143099
definition	codon_start : 1 exception : unclassified translation discrepancy note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC330941 isoform 2 protein_id : NP_849237.1

name	Gm1715 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259935 GeneID:382139 MGI:2686561
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479037.1

name	Ddx10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930055 GeneID:77591 MGI:1924841
definition	codon_start : 1 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 protein_id : XP_284494.3

name	Exph5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28849901 CCDS:CCDS23181.1 GeneID:320051 MGI:2443248
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006886 - intracellular protein transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : synaptotagmin-like homologue lacking C2 domains b protein_id : NP_789816.1

name	Kdelc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47078285 CCDS:CCDS23182.1 GeneID:68304 MGI:1923765
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] codon_start : 1 product : KDEL (Lys-Asp-Glu-Leu) containing 2 protein protein_id : NP_997610.1

name	4930550C14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312924 CCDS:CCDS23183.1 GeneID:75311 MGI:1922561
definition	codon_start : 1 product : hypothetical protein LOC75311 protein_id : NP_083523.1

name	Atm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680740 GeneID:11920 MGI:107202
definition	GO_component : GO:0005634 - nucleus [Evidence TAS]; GO:0005819 - spindle [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016303 - phosphatidylinositol 3-kinase activity [Evidence ISS]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence TAS] [Evidence IDA]; GO:0047485 - protein N-terminus binding [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence TAS] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007420 - brain development [Evidence IGI]; GO:0007049 - cell cycle [Evidence IEA]; GO:0000077 - DNA damage checkpoint [Evidence IMP]; GO:0008630 - DNA damage response, signal transduction resulting in induction of apoptosis [Evidence IMP]; GO:0006281 - DNA repair [Evidence IDA] [Evidence IMP]; GO:0007292 - female gamete generation [Evidence IMP]; GO:0007507 - heart development [Evidence IGI]; GO:0007094 - mitotic spindle checkpoint [Evidence ISS]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0006974 - response to DNA damage stimulus [Evidence TAS]; GO:0010212 - response to ionizing radiation [Evidence ISS]; GO:0001756 - somitogenesis [Evidence IGI] codon_start : 1 exception : mismatches in translation note : ataxia telangiectasia gene mutated in human beings product : ataxia telangiectasia mutated homolog protein_id : NP_031525.1

name	Npat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487235 GeneID:244879 MGI:107605
definition	codon_start : 1 product : nuclear protein in the AT region protein_id : NP_001074621.1

name	Acat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450129 CCDS:CCDS23184.1 GeneID:110446 MGI:87870
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IDA]; GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : acetyl-Coenzyme A acetyltransferase 1 precursor protein_id : NP_659033.1

name	Cul5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076981 GeneID:75717 MGI:1922967
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : vasopressin-activated calcium-mobilizing receptor protein product : cullin 5 protein_id : NP_082083.1

name	Rab39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425356 CCDS:CCDS23185.1 GeneID:270160 MGI:2442855
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB39, member RAS oncogene family protein_id : NP_780771.1

name	EG434404 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82929979 GeneID:434404 MGI:3643565
definition	codon_start : 1 product : hypothetical protein protein_id : XP_486222.2

name	LOC100038958 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259971 GeneID:100038958
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472029.1

name	Slc35f2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254175 GeneID:72022 MGI:1919272
definition	codon_start : 1 exception : mismatches in translation product : solute carrier family 35, member F2 protein_id : NP_082336.2

name	Sln (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384962 GeneID:66402 MGI:1913652
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0016529 - sarcoplasmic reticulum [Evidence IEA] GO_function : GO:0030234 - enzyme regulator activity [Evidence IEA] codon_start : 1 product : sarcolipin protein_id : NP_079816.1

name	LOC100038996 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259973 GeneID:100038996
definition	codon_start : 1 product : similar to proapoptotic protein protein_id : XP_001472053.1

name	Elmod1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82617676 GeneID:270162 MGI:3583900
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006909 - phagocytosis [Evidence IEA] codon_start : 1 product : ELMO domain containing 1 protein_id : NP_808437.2

name	Tnfaip8l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677625 GeneID:244882 MGI:2685363
definition	codon_start : 1 product : tumor necrosis factor, alpha-induced protein 8-like 3 protein_id : NP_001028707.1

name	Cyp19a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681099 CCDS:CCDS23187.1 GeneID:13075 MGI:88587
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0050381 - unspecific monooxygenase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 note : cytochrome P450, 19, aromatase product : cytochrome P450, family 19, subfamily a, polypeptide 1 protein_id : NP_031836.1

name	Gldn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893493 CCDS:CCDS23189.1 GeneID:235379 MGI:2388361
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 note : olfactomedin-related protein; cancer related gene - liver 2; collomin product : gliomedin protein_id : NP_796324.1

name	Dmxl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386112 GeneID:235380 MGI:2444630
definition	codon_start : 1 product : Dmx-like 2 protein_id : XP_358382.5

name	4933412E14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424641 CCDS:CCDS23190.1 GeneID:244885 MGI:2441692
definition	codon_start : 1 product : hypothetical protein LOC244885 protein_id : NP_776139.1

name	Cib2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790085 GeneID:56506 MGI:1929293
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA] codon_start : 1 note : calcium binding protein Kip 2; calcium binding protein Kip2 product : kinase interacting protein 2 protein_id : NP_062660.1

name	Idh3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18250284 CCDS:CCDS23191.1 GeneID:67834 MGI:1915084
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016652 - oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA] codon_start : 1 product : isocitrate dehydrogenase 3 (NAD+) alpha protein_id : NP_083849.1

name	Acsbg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716465 CCDS:CCDS23192.1 GeneID:94180 MGI:2385656
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence ISS] [Evidence IMP]; GO:0031957 - very-long-chain-fatty-acid-CoA ligase activity [Evidence ISS] GO_process : GO:0001676 - long-chain fatty acid metabolism [Evidence ISS] [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0042552 - myelination [Evidence ISS]; GO:0000038 - very-long-chain fatty acid metabolism [Evidence ISS] codon_start : 1 note : bubblegum; lipidosis-related protein lipidosin; gonadotropin-regulated long chain acyl CoA synthetase product : lipidosin protein_id : NP_444408.1

name	LOC100039064 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039064
definition	number : 1 pseudo : _no_value

clone name	MSMg01-361F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507M16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-083N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-345I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098B23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-510H11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-360M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207M21
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-182J19.b	B6Ng01-182J19.g
ACC	GA008455	GA008456
length	1,067	1,045
definition	B6Ng01-182J19.b	B6Ng01-182J19.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(53,482,059 - 53,483,120)	(53,372,613 - 53,373,662)
sequence	gaattctgagagttggagcaatagctgggtagttaagagcactggctgct cttccagaggacccaagtttaattccccatacccacatgatggctcataa ccatctgtaacagtcacaaagactctggtgtcctttatgaccttggtgtc atggcacacacgcactgcatagacgtctatacaggtaaacccctgacaca cacacacacacacacacacacacacacacacacacaaattagtaaaataa tttttaaaagaagaaattgagttctgtgtagttttaaaaaatcttttaaa tcccattactaaaatattactttcatttggtccattcttatttttgaaaa ttttgactgtgaatttaaaaacaattttcatgccagacagtggtggcaca tgcctttaatcccagcactggggaggcagaggaaggtggatttctgaatt tgaggccagcctggtctacagagtgagttgcaggacagccagggctatac aaaaaaaccctgtctagaaaaaaaagaaaaaatatggtttcctttttctt ttcttttcttttcttttctttccgttttgttttgttttgttttgttttgc ttttttttccaagacagtgttcctctgtttaacagccctagctgtcctgg actggctttgtagaccaggttggccttggactcacagagatttgcctgcc tctgcctcctgagtgctggaattaaacacaccactatatcctgctctatc ttttgtttttctatttaatgataactggactagctaaagttgtttgaagt tttctggtactggaaaagtagataactagatgtgcaactatgtataagaa aacagcattagagatgctgggaagccaggcatgtctttactgctagcact tgggaacttgaatcaaataggtggatctctgagtttcaggccagtcagag ctatgtagagatgttccttgttctcaacacccatcctaccagcaaacaag agtgcttgggagtgtgattctttgaatctgtccctttttttttttttttt tttcccgaaaacaggaa	gaattcatacatgttcacctacatttccatgtgtactggttcatagacat acagtgaagtttgcttaaatattatcaactaagtattaagtttagtgaat ctgtttcaaatgagataaaggagaggccagaattggtacagaatattctt gacttagaataatgaggtaagattgacagttaaaagaagtcagtataatg ccaagggaagtagaataagcattcgtggatggttaggaaattgtcagttt gcatgaaaataagatcaatatgataggagcaggtagtattttagggaaag gctgatttacagagcaggactaaattactattgctttgattctgcttaac tcatgaggaccatgtaggcactataatttcccccagtagtttaatctagt tataaaagtatgtattctttttgaacaatacttttaagacttaatacatt gggaaaattctttggggctataaatattcacttagaatttaagtattctg atacatggttcaaacgtgaaaccttcactttgttattgtacttaaattaa ttttaaaaaagattggcttagttatggttactattactgtgattaaaaaa aaaccaccatgaccaaagcaacttggggaggaaagtgtttgtttatttcc ctcacagttcagtacaacagctcatcatcaaaagctgtgaggacaggaag tcatgcagggcaggaacctggaggcaggagctgaagcagaagccagagag gagggctgcttactgcttacccccacccccctccctggcttgcacttcat cacttgctcatcctgctttcttacagaaccgaggcttaccaacccaggaa tgctgtctatcacccataatggggctgggtcttcccacattagttactaa gaacatgcactccaggcttacctacaggcccaatcttataggggcgtttt cttatgatgttccttcctttcaatactccagcttgtatcaaattaccaca aactagccagccaaataactccttgtcacactaatactcagtgtt
quality values	Open. Hide. 58 33 33 28 58 54 42 49 58 54 54 62 47 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 59 62 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 59 43 59 59 59 62 59 36 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 47 62 62 62 56 62 51 46 62 62 62 62 62 62 62 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 48 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 54 58 54 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 54 54 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 52 58 58 54 58 54 58 54 52 58 58 58 58 58 58 58 33 58 58 58 58 50 58 58 58 58 50 58 58 58 51 40 58 58 58 49 41 58 58 58 58 58 58 58 50 58 35 19 58 42 58 46 53 51 51 54 50 50 50 51 54 53 58 58 52 58 42 42 58 50 43 50 58 58 58 51 49 37 48 51 58 39 48 54 50 58 35 39 26 28 41 44 42 51 47 41 51 50 53 42 52 31 43 43 36 49 50 40 44 44 33 43 51 49 28 44 47 39 53 53 42 52 53 51 49 39 38 51 54 36 28 40 54 38 50 34 54 35 37 40 42 41 36 38 50 54 41 50 54 32 45 49 35 33 53 51 49 20 31 34 33 52 38 31 37 53 30 53 52 38 35 38 45 52 38 42 46 47 37 54 28 42 45 37 52 32 53 40 54 54 52 54 39 52 52 52 51 52 32 34 31 49 40 32 53 35 53 37 33 34 37 45 26 28 46 21 31 40 45 26 38 31 22 52 33 31 33 39 39 21 46 37 31 31 32 28 31 51 51 31 45 31 51 51 20 26 32 31 31 23 12 46 51 35 26 31 39 17 31 28 25 37 38 43 34 20 16 31 42 31 33 31 31 32 30 31 26 30 31 36 32 31 18 29 10 27 46 46 43 31 31 28 16 26 17 16 26 29 38 18 31 29 34 33 38 31 38 23 26 39 33 31 26 18 31 36 25 21 25 31 24 32 31 47 14 19 30 32 41 31 33 21 25 31 24 30 25 31 31 48 31 27 27 16 14 31 26 21 25 33 22 20 44 26 19 16 16 21 6 11 14 18 31 31 32 34 33 24 35 11 32 38 27 17 8 26 15 13 28 9 16 31 29 12 8 30 10 23 21 11 17 26 24 32 18 34 16 32 24 7 5 14 12 18 7 7 28 11 7 7 26 19 10 31 19 10 15 31 26 15 19 10 20 21 29 28 25 4 12 34 29 34 20 8 8 14 13 16 5 9 23 13 20 9 26 34 13 28 15 16 21 13 11 14 17 20 26 28 30 31 9 14 18 28 20 12 20 20 10 29 9 27 47 47 40 34 34 40 40 47 28 40 27 30 34 32 38 38 27 22 7 29 24 5 20 6 6 9 20 14 12 8 15 22	Open. Hide. 62 47 43 41 62 47 33 62 62 54 47 62 62 62 62 47 32 62 62 54 62 62 47 62 62 62 62 59 43 62 59 62 62 59 62 59 62 62 62 62 62 59 46 62 59 62 59 62 62 62 62 62 59 62 59 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 59 54 62 62 59 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 58 58 54 58 58 58 58 49 58 58 58 54 54 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 52 58 58 58 58 54 58 58 41 58 58 58 58 58 58 54 45 58 58 58 58 58 54 54 58 47 58 58 58 58 58 58 54 58 58 58 58 54 58 58 58 51 53 58 58 58 58 50 51 58 58 51 58 58 49 51 41 58 58 46 53 58 58 58 52 58 58 54 51 52 58 41 58 58 44 49 58 58 58 58 58 50 47 25 58 58 54 53 58 51 52 52 58 49 50 49 58 58 46 50 50 46 41 54 41 49 51 51 58 58 46 58 39 39 39 47 58 58 58 58 58 58 58 40 41 47 41 58 51 39 50 58 49 50 50 31 58 50 51 52 50 50 51 53 58 44 43 58 49 29 18 49 51 58 58 50 50 53 39 58 54 51 32 54 37 40 49 54 53 38 54 42 51 49 37 39 45 52 53 49 35 52 49 53 39 53 42 50 53 31 30 39 35 45 40 52 45 34 53 39 28 54 54 54 38 45 53 53 42 52 42 24 54 31 32 28 47 54 45 53 37 39 42 33 34 51 34 25 13 54 54 32 46 7 54 22 40 26 42 53 40 33 32 21 40 26 32 13 46 28 15 45 42 45 41 33 29 40 32 23 34 25 9 21 29 31 23 53 31 40 28 41 53 26 52 53 29 39 39 32 33 53 36 43 31 45 31 31 33 18 22 51 51 47 31 31 38 51 51 46 47 41 31 32 51 37 21 30 41 21 42 31 43 24 32 35 31 51 31 33 33 32 26 31 18 19 37 38 31 29 28 30 24 35 31 42 25 31 48 38 43 34 32 32 30 17 26 33 26 23 46 25 31 31 28 25 31 31 31 21 39 22 26 28 44 29 21 14 27 36 37 23 31 29 34 32 24 31 26 24 31 15 14 18 41 32 20 29 26 21 23 34 48 46 29 22 23 30 46 20 5 10 25 25 31 32 37 19 30 13 14 32 29 12 25 14 20 14 20 16 30 27 34 22 31 17 21 26 8 16 27 32 16 38 20 15 11 21 32 26 32 30 26 24 17 32 11 13 8 22 24 19 16 17 14 18 15 23 14 12 11 37 48 48 32 31 11 10 6 4 9 11 12 8 4 4 6 19 15 18 17 32 15 33 11 10 23 25 25 40 20 26 34 38 27 23 10 19 14 22 20 32 27 27 13 29 13 19 24 14 8 28 21 11 6 3 5 9 7 5 6 17 16 14 8 7 16 12 21 20 28 8 5 22 28 3 3 3 6 11 5 27 15 4 6 16 13 7 7 10 10 18 21 31 27 26 7 4 5 12 23 16 9 26 8 19

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_53482059_53483120
seq2: B6Ng01-182J19.b_41_1107 (reverse)

seq1  TTCCTG-TCTCGGGAAAAAAAAAAAAAAAAA---GGACAGATTCAAAGAA  46
      |||||| | ||||||||||||||||||||||   ||||||||||||||||
seq2  TTCCTGTTTTCGGGAAAAAAAAAAAAAAAAAAAGGGACAGATTCAAAGAA  50

seq1  TCACACTCCC-AGCACTTCTTGTTTTGCTGGGTAGGATGGGTGTTGAG-A  94
      |||||||||| ||||| ||||| |||||| |||||||||||||||||| |
seq2  TCACACTCCCAAGCAC-TCTTG-TTTGCT-GGTAGGATGGGTGTTGAGAA  97

seq1  CA--GGACATCTCTACATAGCTCTGACTGGCCTGAAACTCAGAGATCCAC  142
      ||  | ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACATCTCTACATAGCTCTGACTGGCCTGAAACTCAGAGATCCAC  147

seq1  CTATTTGATTCAAGTTCCCAAGTGCTAGCAGTAAAGACATGCCTGGCTTC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGATTCAAGTTCCCAAGTGCTAGCAGTAAAGACATGCCTGGCTTC  197

seq1  CCAGCATCTCTAATGCTGTTTTCTTATACATAGTTGCACATCTAGTTATC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTCTAATGCTGTTTTCTTATACATAGTTGCACATCTAGTTATC  247

seq1  TACTTTTCCAGTACCAGAAAACTTCAAACAACTTTAGCTAGTCCAGTTAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCCAGTACCAGAAAACTTCAAACAACTTTAGCTAGTCCAGTTAT  297

seq1  CATTAAATAGAAAAACAAAAGATAGAGCAGGATATAGTGGTGTGTTTAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATAGAAAAACAAAAGATAGAGCAGGATATAGTGGTGTGTTTAAT  347

seq1  TCCAGCACTCAGGAGGCAGAGGCAGGCAAATCTCTGTGAGTCCAAGGCCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACTCAGGAGGCAGAGGCAGGCAAATCTCTGTGAGTCCAAGGCCA  397

seq1  ACCTGGTCTACAAAGCCAGTCCAGGACAGCTAGGGCTGTTAAACAGAGGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCTACAAAGCCAGTCCAGGACAGCTAGGGCTGTTAAACAGAGGA  447

seq1  ACACTGTCTTGGAAAAAAAAGCAAAACAAAACAAAACAAAACAAAACGGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCTTGGAAAAAAAAGCAAAACAAAACAAAACAAAACAAAACGGA  497

seq1  AAGAAAAGAAAAGAAAAGAAAAGAAAAAGGAAACCATATTTTTTCTTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAAGAAAAGAAAAAGGAAACCATATTTTTTCTTTTT  547

seq1  TTTCTAGACAGGGTTTTTTTGTATAGCCCTGGCTGTCCTGCAACTCACTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGACAGGGTTTTTTTGTATAGCCCTGGCTGTCCTGCAACTCACTC  597

seq1  TGTAGACCAGGCTGGCCTCAAATTCAGAAATCCACCTTCCTCTGCCTCCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCAAATTCAGAAATCCACCTTCCTCTGCCTCCC  647

seq1  CAGTGCTGGGATTAAAGGCATGTGCCACCACTGTCTGGCATGAAAATTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGGGATTAAAGGCATGTGCCACCACTGTCTGGCATGAAAATTGT  697

seq1  TTTTAAATTCACAGTCAAAATTTTCAAAAATAAGAATGGACCAAATGAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTCACAGTCAAAATTTTCAAAAATAAGAATGGACCAAATGAAA  747

seq1  GTAATATTTTAGTAATGGGATTTAAAAGATTTTTTAAAACTACACAGAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTTAGTAATGGGATTTAAAAGATTTTTTAAAACTACACAGAAC  797

seq1  TCAATTTCTTCTTTTAAAAATTATTTTACTAATTTGTGTGTGTGTGTGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTTCTTTTAAAAATTATTTTACTAATTTGTGTGTGTGTGTGTG  847

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTCAGGGGTTTACCTGTATAGACGTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTCAGGGGTTTACCTGTATAGACGTCT  897

seq1  ATGCAGTGCGTGTGTGCCATGACACCAAGGTCATAAAGGACACCAGAGTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGCGTGTGTGCCATGACACCAAGGTCATAAAGGACACCAGAGTC  947

seq1  TTTGTGACTGTTACAGATGGTTATGAGCCATCATGTGGGTATGGGGAATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTGTTACAGATGGTTATGAGCCATCATGTGGGTATGGGGAATT  997

seq1  AAACTTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACTACCCAGCTAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACTACCCAGCTAT  1047

seq1  TGCTCCAACTCTCAGAATTC  1062
      ||||||||||||||||||||
seq2  TGCTCCAACTCTCAGAATTC  1067

seq1: chr9_53372613_53373662
seq2: B6Ng01-182J19.g_65_1109

seq1  GAATTCATACATGTTCACCTACATTTCCATGTGTACTGGTTCATAGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACATGTTCACCTACATTTCCATGTGTACTGGTTCATAGACAT  50

seq1  ACAGTGAAGTTTGCTTAAATATTATCAACTAAGTATTAAGTTTAGTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAGTTTGCTTAAATATTATCAACTAAGTATTAAGTTTAGTGAAT  100

seq1  CTGTTTCAAATGAGATAAAGGAGAGGCCAGAATTGGTACAGAATATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAAATGAGATAAAGGAGAGGCCAGAATTGGTACAGAATATTCTT  150

seq1  GACTTAGAATAATGAGGTAAGATTGACAGTTAAAAGAAGTCAGTATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAATAATGAGGTAAGATTGACAGTTAAAAGAAGTCAGTATAATG  200

seq1  CCAAGGGAAGTAGAATAAGCATTCGTGGATGGTTAGGAAATTGTCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAAGTAGAATAAGCATTCGTGGATGGTTAGGAAATTGTCAGTTT  250

seq1  GCATGAAAATAAGATCAATATGATAGGAGCAGGTAGTATTTTAGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAATAAGATCAATATGATAGGAGCAGGTAGTATTTTAGGGAAAG  300

seq1  GCTGATTTACAGAGCAGGACTAAATTACTATTGCTTTGATTCTGCTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTACAGAGCAGGACTAAATTACTATTGCTTTGATTCTGCTTAAC  350

seq1  TCATGAGGACCATGTAGGCACTATAATTTCCCCCAGTAGTTTAATCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGACCATGTAGGCACTATAATTTCCCCCAGTAGTTTAATCTAGT  400

seq1  TATAAAAGTATGTATTCTTTTTGAACAATACTTTTAAGACTTAATACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGTATGTATTCTTTTTGAACAATACTTTTAAGACTTAATACATT  450

seq1  GGGAAAATTCTTTGGGGCTATAAATATTCACTTAGAATTTAAGTATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATTCTTTGGGGCTATAAATATTCACTTAGAATTTAAGTATTCTG  500

seq1  ATACATGGTTCAAACGTGAAACCTTCACTTTGTTATTGTACTTAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGTTCAAACGTGAAACCTTCACTTTGTTATTGTACTTAAATTAA  550

seq1  TTTTAAAAAAGATTGGCTTAGTTATGGTTACTATTACTGTGATTAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAGATTGGCTTAGTTATGGTTACTATTACTGTGATTAAAAAA  600

seq1  AAACCACCATGACCAAAGCAACTTGGGGAGGAAAGTGTTTGTTTATTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCATGACCAAAGCAACTTGGGGAGGAAAGTGTTTGTTTATTTCC  650

seq1  CTCACAGTTCAGTACAACAGCTCATCATCAAAAGCTGTGAGGACAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTTCAGTACAACAGCTCATCATCAAAAGCTGTGAGGACAGGAAG  700

seq1  TCATGCAGGGCAGGAACCTGGAGGCAGGAGCTGAAGCAGAAGCCAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGGGCAGGAACCTGGAGGCAGGAGCTGAAGCAGAAGCCAGAGAG  750

seq1  GAGGGCTGCTTACTGCTTACCCCCACCCCCCTCCCTGGCTTGCACTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGCTTACTGCTTACCCCCACCCCCCTCCCTGGCTTGCACTTCAT  800

seq1  CACTTGCTCATCCTGCTTTCTTACAGAACCGAGGCTTACCAACCCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTCATCCTGCTTTCTTACAGAACCGAGGCTTACCAACCCAGGAA  850

seq1  TGCTGTCTATCACCCATAAT-GGGCTGGGTCTTCCCACATTAGTTACTAA  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCTGTCTATCACCCATAATGGGGCTGGGTCTTCCCACATTAGTTACTAA  900

seq1  GAACATGCACTCCAGGCTTACCTACA-GCCCAATCTTATAGGGGCGTCTT  948
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  GAACATGCACTCCAGGCTTACCTACAGGCCCAATCTTATAGGGGCGTTTT  950

seq1  CTTAATTGATGTTCC-TCCTTTCAAATAACTCCAGCTTGTATCAAATTGA  997
      ||||  ||||||||| |||||||||   ||||||||||||||||||||  
seq2  CTTA--TGATGTTCCTTCCTTTCAA--TACTCCAGCTTGTATCAAATTAC  996

seq1  CACAAAACTAGCCAGCAAAATTAACCCCTTGTCACACTAAATACATCAGT  1047
      ||| |||||||||||| ||| |||| |||||||||||| ||||| |||||
seq2  CAC-AAACTAGCCAGCCAAA-TAACTCCTTGTCACACT-AATAC-TCAGT  1042

seq1  GTT  1050
      |||
seq2  GTT  1045

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information