BAC Information

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BAC

Clone NameB6Ng01-182O11
Chromosome9 (Build37)
Map Location 68,568,885 - 68,569,989
singlet/doubletsinglet
Overlap geneRora
Upstream geneLOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream gene9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182O11.bB6Ng01-182O11.g
ACCGA008668GA008669
length1,102845
definitionB6Ng01-182O11.b B6Ng01-182O11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaggatctgcccatctctagcactgagatcacaggtacacact
gccacatctgggtgacatggtaccaaactgggtgatgaggatctgactgg
ttctcacgcttgcatagtaagcgaaccaccatacggccatctctccacgt
ccctgccctgatgcttcaattaacaatgtttaggaattaataggattcta
gatcctgctttctataccagacgcctcctttcatggcaaaacattctgag
cgccctgaggttttatggtctcgagtttagttatgaagtaatgaaagagc
taacacctcaaggggccgctccagacattttccaaggcctcctgtctaca
gcccttaggatgtttgcaacaggtcttcttaatgcccgctacttgctact
tacaaaacctgaaatacagcccctgtcactggggaatctggcagaagaca
gaattgatacatgcttcctttaatagggtcagaagaggtcttccccttta
tgtgtcacacactatgctcagcagaggaactcttcacacacaggaacccc
acggacattggatgatcagtcagtgaataaataaatcggggtccatggct
gcaagtatcagtggaaaccagcattgctaataaattccatccatgcccca
gacactactgaaattctacctgatattttcatttaactatcagtttatgt
gcctatctatttgtgtgcacatgtctatgtctcatgggaggcgatggatg
cagaaatcaaaagggtaaaagaagccagaaatgttagtatattagtaggt
actgattggtcagggctcataacatctagacctgtgtatcatggtaaatg
tagaatcttatgcctaatcagaggcaatgcatcatatcaaaagccagaaa
tccctccatctaagggccttagaagattctagaatattataaagttaggc
gaggcaggaaagagtaccaaccaatcacccacagacatgattctaatctt
caagtcaaaatattctagagtgtactttctattttcgagggtaggggaag
gatgctaaggaagaggctagatatttgaggtcagtgtgtgtgtgaagagg
tg

gaattcaagaaactagaaatcagcaatcaaatgatccaattaaaaaatgg
ggatacagatctacacagagaattctcaacagaggaatctttaatggcca
agaagccattgagtactgaacattaaaaaagtgttcaacatccttagcca
tcagggaaatgcaaatcaaaaggactctgagactccaaatcacaccagtc
agaatggccaagatcaaagattcaagtgacagcacatgctggcaagaatg
tggagtgaagggaacagttctccattgctggtgggagtgcaaacttgtac
agccactttggaaatcaatatggtggtttatcagaaaattggaaatagtt
ctacctcgagacccaacaataccattcctgggcatagacccaaaggacac
tctactatacaagaatacttgtccaattatgttaataacagcttattttg
tgtaagagccagcaactgcaaacaacctagactttcctcaatcaggatgt
ccttaaaccaaagaatggataaagaaaatgtgatacatttacacaatggt
attaaaaacaatgacatcatgaaacttgcaggcaaatggatggaactaga
aaagatcatcctgtgtgaggtaagccagaccctcaaagacaaacatagca
tggactctcttataagtggatattagtcataaagtacaggataaccacat
tacaatcctcagacccaaagaaggtacataacaaggagtactcaagtggg
aggggcagggcacgtgaatctcacgaagaaagagaaacagaatagacatt
gaaaggtggagggagggaaatgactgggaaatgatggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68568885_68569989
seq2: B6Ng01-182O11.b_49_1150 (reverse)

seq1  CACCTCTTCCACACACAC-CTGGCCCTCAATATCTAGCCTCTTCCCTTAG  49
      |||||||| ||||||||| ||| ||   ||||||||||||||| ||||||
seq2  CACCTCTT-CACACACACACTGACCTCAAATATCTAGCCTCTT-CCTTAG  48

seq1  CATCCTTCCCCTACCCTCGAAAATAGAAAGTACACCTCTAGAATTATTTT  99
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  CATCCTTCCCCTACCCTCGAAAATAGAAAGTACA-CTCTAGAA-TATTTT  96

seq1  GACTTGAAGATTAGAATCATGTCTGTGGGTGATTGGTTGGTACTCTTTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAGATTAGAATCATGTCTGTGGGTGATTGGTTGGTACTCTTTCC  146

seq1  TTGCCTCGCCTAACTTTAT-ATATTCTAGAATCTTCTAAGGCCCTTAGAT  198
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -TGCCTCGCCTAACTTTATAATATTCTAGAATCTTCTAAGGCCCTTAGAT  195

seq1  GGAGGGATTTCTGGCTTTTGATATGATGCATTGCCTCTGATTAGGCATAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATTTCTGGCTTTTGATATGATGCATTGCCTCTGATTAGGCATAA  245

seq1  GATTCTACATTTACCATGATACACAGGTCTAGATGTTATGAGCCCTGACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTACATTTACCATGATACACAGGTCTAGATGTTATGAGCCCTGACC  295

seq1  AATCAGTACCTACTAATATACTAACATTTCTGGCTTCTTTTACCCTTTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTACCTACTAATATACTAACATTTCTGGCTTCTTTTACCCTTTTG  345

seq1  ATTTCTGCATCCATCGCCTCCCATGAGACATAGACATGTGCACACAAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCATCCATCGCCTCCCATGAGACATAGACATGTGCACACAAATA  395

seq1  GATAGGCACATAAACTGATAGTTAAATGAAAATATCAGGTAGAATTTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCACATAAACTGATAGTTAAATGAAAATATCAGGTAGAATTTCAG  445

seq1  TAGTGTCTGGGGCATGGATGGAATTTATTAGCAATGCTGGTTTCCACTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTGGGGCATGGATGGAATTTATTAGCAATGCTGGTTTCCACTGA  495

seq1  TACTTGCAGCCATGGACCCCGATTTATTTATTCACTGACTGATCATCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCAGCCATGGACCCCGATTTATTTATTCACTGACTGATCATCCAA  545

seq1  TGTCCGTGGGGTTCCTGTGTGTGAAGAGTTCCTCTGCTGAGCATAGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTGGGGTTCCTGTGTGTGAAGAGTTCCTCTGCTGAGCATAGTGTG  595

seq1  TGACACATAAAGGGGAAGACCTCTTCTGACCCTATTAAAGGAAGCATGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATAAAGGGGAAGACCTCTTCTGACCCTATTAAAGGAAGCATGTA  645

seq1  TCAATTCTGTCTTCTGCCAGATTCCCCAGTGACAGGGGCTGTATTTCAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTGTCTTCTGCCAGATTCCCCAGTGACAGGGGCTGTATTTCAGG  695

seq1  TTTTGTAAGTAGCAAGTAGCGGGCATTAAGAAGACCTGTTGCAAACATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAGTAGCAAGTAGCGGGCATTAAGAAGACCTGTTGCAAACATCC  745

seq1  TAAGGGCTGTAGACAGGAGGCCTTGGAAAATGTCTGGAGCGGCCCCTTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTGTAGACAGGAGGCCTTGGAAAATGTCTGGAGCGGCCCCTTGA  795

seq1  GGTGTTAGCTCTTTCATTACTTCATAACTAAACTCGAGACCATAAAACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAGCTCTTTCATTACTTCATAACTAAACTCGAGACCATAAAACCT  845

seq1  CAGGGCGCTCAGAATGTTTTGCCATGAAAGGAGGCGTCTGGTATAGAAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGCTCAGAATGTTTTGCCATGAAAGGAGGCGTCTGGTATAGAAAG  895

seq1  CAGGATCTAGAATCCTATTAATTCCTAAACATTGTTAATTGAAGCATCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTAGAATCCTATTAATTCCTAAACATTGTTAATTGAAGCATCAG  945

seq1  GGCAGGGACGTGGAGAGATGGCCGTATGGTGGTTCGCTTACTATGCAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGACGTGGAGAGATGGCCGTATGGTGGTTCGCTTACTATGCAAGC  995

seq1  GTGAGAACCAGTCAGATCCTCATCACCCAGTTTGGTACCATGTCACCCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACCAGTCAGATCCTCATCACCCAGTTTGGTACCATGTCACCCAG  1045

seq1  ATGTGGCAGTGTGTACCTGTGATCTCAGTGCTAGAGATGGGCAGATCCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAGTGTGTACCTGTGATCTCAGTGCTAGAGATGGGCAGATCCTT  1095

seq1  AGAATTC  1105
      |||||||
seq2  AGAATTC  1102


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