BAC Information

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BAC

Clone NameB6Ng01-183C06
Chromosome9 (Build37)
Map Location 78,234,764 - 78,235,618
singlet/doubletsinglet
Overlap geneLOC666408
Upstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik
Downstream geneLOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183C06.bB6Ng01-183C06.g
ACCGA008846GA008847
length1,235856
definitionB6Ng01-183C06.b B6Ng01-183C06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttaatagggacggggtttcgttttctctctctcttgcttct
tgcactctggctcctgaagatgtaagcaataaagctttgccgcagaagat
tctggtctgttgcgtctttcctggccggtcgtgagaacgcgtctaataac
aattggtgccgaattccgggacgagaaaaaactcgggactggcgcaagga
agatccctcattccagaaccagaactgcgggtcgcggtaataaaggttcc
cgtaaagcagactgttaagaaggattcaactgtatgaattcagaactttt
cagctggggaacgagagtaccagtgagtacagctttacgaggtaagcctg
gtcttgaactttctaaggaaattcaagacagtctatcagaagtaaagtgg
aaaatgtttggccttggattttttctagtgttagaagcccttttgttcct
tttcacatgttatcaagtggttaaggcagggcggattctagatgaaattc
aggacaagctatcagaagtaaagcggggagagagagtaggaacaaagagg
aaatatggtacacaaaataagtatacaggcctttccaagggtcttgaacc
cgaggaaaagttaaggttaggtaggaatacctggagagagattagaagaa
aaagaggaaaaagggaaaagaagaaagatcaattagcggaggtctctagg
aaaaggagcctgtgctcatcgctggatgggctcggggagccagctcttag
tagctctgaagcagatgaagaattctcctctgaagaaacagactgggagg
aagaagcagctcattatgagaaaaaagggtaccagccaggtaaagtgcta
gctaatcagttaaggaagccaaaagcggctggcgaaggccagtttgctga
ttggcctcagggcagtcggcttcaaggtccgccctatgcggagttccccg
ccctgcgtagtgcgtcagccctgcgcagaagaaggcagtgcgcagactca
ttcattcccaagagaaggaacaaaaggaaaaatacaacaagcattttccg
tctttgaaaggagccgaagggtgggtcgtgtcacgctcctgtagaaaata
cttacaaatttaaagaaattgccgaaatcggttcggtaaatacgaaacca
atgctaattttaacctggtgcagttagaaacaggcttgccggcattgcac
ttaactccgtgtcggacactggacaaaaacgattg
gaattcaaagcaacaaagatcacaaaccttgtcgtgactaccaccaccgt
ccaaaatccaagaacctgtgttcacctccctgttcacaagttgagtgaaa
caaaatccatgtgattctgtttacagcacagattcaaaaattgactctaa
ggagcaaaagtatagctgagcgtgaaatgactgctcttcttctagatgtg
actcattccgggtcgtgctcatccaaccacatcaccacaagaacacagaa
tcacacggttcagtttactaagggctctaaccactatctgagtattgatc
tgtgctcgtccatatattgggaatatgctagaaaggtaagctagactctg
ttgacaccatgttcttcctctcaatgaggtctcagtgttggctggtaagt
gtgtgtcttgggaatcaaagcagtcaatcaacagatttatgtagtcagca
aggaggagcatcacgacttcagaagagccttctgcatcagctggtgtcca
catgttcaggccttagctacagggttttagttaagaggagttagggcaag
ataaggatgtaggtcagttactttagtggttccccagtatgcccaaagct
cggccctttgtccctcaggatggcattaaactgcctgtggagtcacagag
ttataatttcagcctttaggaagttgatgtgtgaagatcataagtttaag
gtcatccctgtctatatactgagttttatgtgcagcctaatttaatggtc
tcttaaaaactctctccaggggctggctaaatggctcagtgagtaagatc
acttgctcttctgaaggtcctgatttaattcctagcaaccccatggcggt
ttacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78234764_78235618
seq2: B6Ng01-183C06.g_63_918

seq1  GAATTCAAAGCAACAAAGATCACAAACCTTGTCGTGACTACCACCACCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAACAAAGATCACAAACCTTGTCGTGACTACCACCACCGT  50

seq1  CCAAAATCCAAGAACCTGTGTTCACCTCCCTGTTCACAAGTTGAGTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCCAAGAACCTGTGTTCACCTCCCTGTTCACAAGTTGAGTGAAA  100

seq1  CAAAATCCATGTGATTCTGTTTACAGCACAGATTCAAAAATTGACTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCATGTGATTCTGTTTACAGCACAGATTCAAAAATTGACTCTAA  150

seq1  GGAGCAAAAGTATAGCTGAGCGTGAAATGACTGCTCTTCTTCTAGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAAAGTATAGCTGAGCGTGAAATGACTGCTCTTCTTCTAGATGTG  200

seq1  ACTCATTCCGGGTCGTGCTCATCCAACCACATCACCACAAGAACACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCCGGGTCGTGCTCATCCAACCACATCACCACAAGAACACAGAA  250

seq1  TCACACGGTTCAGTTTACTAAGGGCTCTAACCACTATCTGAGTATTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGGTTCAGTTTACTAAGGGCTCTAACCACTATCTGAGTATTGATC  300

seq1  TGTGCTCGTCCATATATTGGGAATATGCTAGAAAGGTAAGCTAGACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCGTCCATATATTGGGAATATGCTAGAAAGGTAAGCTAGACTCTG  350

seq1  TTGACACCATGTTCTTCCTCTCAATGAGGTCTCAGTGTTGGCTGGTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCATGTTCTTCCTCTCAATGAGGTCTCAGTGTTGGCTGGTAAGT  400

seq1  GTGTGTCTTGGGAATCAAAGCAGTCAATCAACAGATTTATGTAGTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTTGGGAATCAAAGCAGTCAATCAACAGATTTATGTAGTCAGCA  450

seq1  AGGAGGAGCATCACGACTTCAGAAGAGCCTTCTGCATCAGCTGGTGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGCATCACGACTTCAGAAGAGCCTTCTGCATCAGCTGGTGTCCA  500

seq1  CATGTTCAGGCCTTAGCTACAGGGTTTTAGTTAAGAGGAGTTAGGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAGGCCTTAGCTACAGGGTTTTAGTTAAGAGGAGTTAGGGCAAG  550

seq1  ATAAGGATGTAGGTCAGTTACTTTAGTGGTTCCCCAGTATGCCCAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGATGTAGGTCAGTTACTTTAGTGGTTCCCCAGTATGCCCAAAGCT  600

seq1  CGGCCCTTTGTCCCTCAGGATGGCATTAAACTGCCTGTGGAGTCACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCTTTGTCCCTCAGGATGGCATTAAACTGCCTGTGGAGTCACAGAG  650

seq1  TTATAATTTCAGCCTTTAGGAAGTTGATGTGTGAAGATCATAAGTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTCAGCCTTTAGGAAGTTGATGTGTGAAGATCATAAGTTTAAG  700

seq1  GTCATCCCTGTCTATATACTGAG-TTTATGTGCAGCCTAATTTAATGGTC  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCATCCCTGTCTATATACTGAGTTTTATGTGCAGCCTAATTTAATGGTC  750

seq1  TCTTAAAAACTCTCTCCAGGGGCTGGCGAAATGGCTCAGTGAGTAAGAGC  799
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TCTTAAAAACTCTCTCCAGGGGCTGGCTAAATGGCTCAGTGAGTAAGATC  800

seq1  AC-TGCTCTTCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGG  848
      || |||||||||||||||||||| || |||||| ||||||| ||||| ||
seq2  ACTTGCTCTTCTGAAGGTCCTGA-TTTAATTCCTAGCAACCCCATGGCGG  849

seq1  TTTACAA  855
      ||||| |
seq2  TTTACCA  856