BAC Information

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BAC

Clone NameB6Ng01-183E05
Chromosome9 (Build37)
Map Location 8,976,608 - 9,100,987
singlet/doubletdoublet
Overlap gene9030420J04Rik
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183E05.bB6Ng01-183E05.g
ACCGA008938GA008939
length1,2121,095
definitionB6Ng01-183E05.b B6Ng01-183E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,976,608 - 8,977,815)(9,099,893 - 9,100,987)
sequence
gaattcaaaatgcctaagcatgagcacagtgaaaaagcaaagcccagagg
aaaactctggcaccacactgaggagacacactgtggcacagcactgagga
gacacactgtggcaccacactgaggagacacactgtgacacagcactgag
gagacacactgtggcacagcactgaggggacacactgtggcacagcactg
aggggacacactgtggcacagcactgaggagacacactgtgacacagcac
tgaggagacacactgtggcacagcactgaggagacacactgtggcacagc
actgaggggacacactgtggcacagcactgaggggacactggggagccac
ctggaaccatccgttctgtaccatttgctcacacatcattcaaccttctt
catcccttttcactgttcctttcattctctataagatgaccaggtaagag
catattgaaaccagccatgatccagtaaaactcttagaaatcataatttt
tgattcctgtgtttgaaatgatcccaaatggggcacattggaggactacc
acatacatctcatacttgcacatctggtcccccagtatattacataatgt
ttataaagaaaatatgaataaagcaaaggaatttgagtttattaaagata
cttaattttaaaaaatggaaaaatctgcttgttaaatagcgaagaataaa
ttaccaatccaaaacttcattttgttgtcattaaaggattttggtattat
ttgtatgtcaaaaaccacttgggagactcacaaactaagatttttttact
gtgaaaagtattcttttgtgtattgcttgtataacatgataaacatcctg
aacattacattttttctaataaaatgtgaatcacatataaatgaaatatg
tttaaaggagggaataactcagcatgaacaataactactgttgatcaatc
agttaacatgggttattactaatctaaggtatgatgtgagtagcatagct
ctttactcccttttcatgtttttgatttctccccatcagaaagccactgt
taactttcatcatcgcttttggttcttcatggaccttctaaaccacttgc
attttatattctacacctctttaaatagcacttggtccaggaggtaagtc
cctgctctctctgtgcaaagcttctatagtcaagctttgcagcctcatgc
ctgcaaatcaca

gaattctgcctcagtctccagggtggacagactgcaaaaagcaattctaa
gactgcaaaaacactgagggatgctctgtgtggtggctgaagcatgcgat
accagaatataggagagagtgatcaaaactttgtctgttatacatcaagt
tcatgtctcaaacacacaaacaagcaaaaacagtgtagaaaatcagggcc
tgggtggtcatggaaacctggaaagagggtttttaatacgatcttttatt
gagttttcagaatttcatgcatatttatgatcagttttgatcgtgtttac
tctgtccctctaattcatcacagaaccagctgtccctactcttccctagt
ttgtatttacttttgaaaaattagttagttattccatgatccaatgagtc
caatttgtgctacccatatattcctcatgtaaggtctactgaaacttgct
atccagaggctacacccttaggaaaacttcccccagcagccacctaatgt
gagcagcttctccactatcagtagactaacaagcttcccaaacctggaaa
attgattggctcagttttgttcagacaactacagatgctgtagtcccatc
cagaacttaagattttgcttttctccagtcctttgtaacttctgactctt
ctatatctccttctgagaaggtccatgaatcttgggggacagcatataat
atagatgtcccatgtgtggcttaggaccctatagacaattagtctctatg
ttttggccattctgaaaatgcttcagtattttgggttaatggtcttgctg
agttgaagccaacccattttcccttgcttcctggttatttgtctagaaac
atgaccggctatacttagaatgattgaatttgttcattcgttcaactgcc
agttggtctaaggctgctttggcagcacccaaagatgggtccagttgtgc
cacaaggcagacaagggagtgcttataaaattctgggattgcaattttct
tagactccaaagctttggttctcttgtctcccatgacacatgcttgagag
aagacataagcctagcggtcacttttcctgacattcttagaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_8976608_8977815
seq2: B6Ng01-183E05.b_45_1256

seq1  GAATTCAAAATGCCTAAGCATGAGCACAGTGAAAAAGCAAAGCCCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATGCCTAAGCATGAGCACAGTGAAAAAGCAAAGCCCAGAGG  50

seq1  AAAACTCTGGCACCACACTGAGGAGACACACTGTGGCACAGCACTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGGCACCACACTGAGGAGACACACTGTGGCACAGCACTGAGGA  100

seq1  GACACACTGTGGCACCACACTGAGGAGACACACTGTGACACAGCACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTGTGGCACCACACTGAGGAGACACACTGTGACACAGCACTGAG  150

seq1  GAGACACACTGTGGCACAGCACTGAGGGGACACACTGTGGCACAGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACACTGTGGCACAGCACTGAGGGGACACACTGTGGCACAGCACTG  200

seq1  AGGGGACACACTGTGGCACAGCACTGAGGAGACACACTGTGACACAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACACACTGTGGCACAGCACTGAGGAGACACACTGTGACACAGCAC  250

seq1  TGAGGAGACACACTGTGGCACAGCACTGAGGAGACACACTGTGGCACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACACACTGTGGCACAGCACTGAGGAGACACACTGTGGCACAGC  300

seq1  ACTGAGGGGACACACTGTGGCACAGCACTGAGGGGACACTGGGGAGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGGACACACTGTGGCACAGCACTGAGGGGACACTGGGGAGCCAC  350

seq1  CTGGAACCATCCGTTCTGTACCATTTGCTCACACATCATTCAACCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCATCCGTTCTGTACCATTTGCTCACACATCATTCAACCTTCTT  400

seq1  CATCCCTTTTCACTGTTCCTTTCATTCTCTATAAGATGACCAGGTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTTTCACTGTTCCTTTCATTCTCTATAAGATGACCAGGTAAGAG  450

seq1  CATATTGAAACCAGCCATGATCCAGTAAAACTCTTAGAAATCATAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGAAACCAGCCATGATCCAGTAAAACTCTTAGAAATCATAATTTT  500

seq1  TGATTCCTGTGTTTGAAATGATCCCAAATGGGGCACATTGGAGGACTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTGTGTTTGAAATGATCCCAAATGGGGCACATTGGAGGACTACC  550

seq1  ACATACATCTCATACTTGCACATCTGGTCCCCCAGTATATTACATAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATCTCATACTTGCACATCTGGTCCCCCAGTATATTACATAATGT  600

seq1  TTATAAAGAAAATATGAATAAAGCAAAGGAATTTGAGTTTATTAAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAAAATATGAATAAAGCAAAGGAATTTGAGTTTATTAAAGATA  650

seq1  CTTAATTTTAAAAAATGGAAAAATCTGCTTGTTAAATAGCGAAGAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTTAAAAAATGGAAAAATCTGCTTGTTAAATAGCGAAGAATAAA  700

seq1  TTACCAATCCAAAACTTCATTTTGTTGTCATTAAAGGATTTTGGTATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATCCAAAACTTCATTTTGTTGTCATTAAAGGATTTTGGTATTAT  750

seq1  TTGTATGTCAAAAACCACTTGGGAGACTCACAAACTAAGATTTTTTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTCAAAAACCACTTGGGAGACTCACAAACTAAGATTTTTTTACT  800

seq1  GTGAAAAGTATTCTTTTGTGTATTGCTTGTATAACATGATAAACATCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGTATTCTTTTGTGTATTGCTTGTATAACATGATAAACATCCTG  850

seq1  AACATTACATTTTTTCTAATAAAATGTGAATCACATATAAATGAAATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACATTTTTTCTAATAAAATGTGAATCACATATAAATGAAATATG  900

seq1  TTTAAAGGAGGGAATAACTCAGCATGAACAATAACTACTGTTGATCAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGAGGGAATAACTCAGCATGAACAATAACTACTGTTGATCAATC  950

seq1  AGTTAACAT-GGTTATTACTAATCTAAGGTATGATGTGAGTAGCATAGCT  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACATGGGTTATTACTAATCTAAGGTATGATGTGAGTAGCATAGCT  1000

seq1  CTTTACTCCCTTTTCATG-TTTTGATTTCTCCCCATCAAGAAAGCCACTG  1048
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CTTTACTCCCTTTTCATGTTTTTGATTTCTCCCCATC-AGAAAGCCACTG  1049

seq1  TTAACTTTCATCATCGCTTTTGGTTC-TCATGGAC--TCTAAACCACCTT  1095
      |||||||||||||||||||||||||| ||||||||  ||||||||| |||
seq2  TTAACTTTCATCATCGCTTTTGGTTCTTCATGGACCTTCTAAACCA-CTT  1098

seq1  GCATTTTATAATTCTTACA-CTC-TTAAATAGCAC-TGGT-CAAGAGGAA  1141
      ||||||||| |||| |||| ||| ||||||||||| |||| || |||| |
seq2  GCATTTTAT-ATTC-TACACCTCTTTAAATAGCACTTGGTCCAGGAGGTA  1146

seq1  A--TCCTGCTC-CTCTGTGCAAAAACCTTTCCTTATAAGCCAGCTTTTGC  1188
      |   ||||||| ||||||||  ||| |||    ||||  | ||| |||||
seq2  AGTCCCTGCTCTCTCTGTGC--AAAGCTT---CTATAGTCAAGC-TTTGC  1190

seq1  AG-CTCATGCCTGC-AATCACA  1208
      || ||||||||||| |||||||
seq2  AGCCTCATGCCTGCAAATCACA  1212


seq1: chr9_9099893_9100987
seq2: B6Ng01-183E05.g_68_1162 (reverse)

seq1  CAGTTCTAAG-ATGTCAAGGGAAAGTGACCGCTAGGC-TATGTCCTTCTC  48
      |||||||||| ||||| ||| |||||||||||||||| ||||| ||||||
seq2  CAGTTCTAAGAATGTC-AGGAAAAGTGACCGCTAGGCTTATGT-CTTCTC  48

seq1  TCAAGCATGTGTCATGGGAGGAACAGAGGAACCAAAGCTTTGGAGTCTAA  98
      ||||||||||||||||||||  |||   ||||||||||||||||||||||
seq2  TCAAGCATGTGTCATGGGAG--ACAAGAGAACCAAAGCTTTGGAGTCTAA  96

seq1  GAAAATTTGCAATCCCAGAATTTTATAAGCACTCCCTTGTCTGCC-TGTG  147
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAAA-TTGCAATCCCAGAATTTTATAAGCACTCCCTTGTCTGCCTTGTG  145

seq1  GCACAACTGGA-CCATCTTTGGGTGCTGCCAAAGCAGCCTTAGACCAACT  196
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCACAACTGGACCCATCTTTGGGTGCTGCCAAAGCAGCCTTAGACCAACT  195

seq1  GGCAGTTGAACGAATGAACAAATTCAATCATTCTAAGTATAGCCGGTCAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGAACGAATGAACAAATTCAATCATTCTAAGTATAGCCGGTCAT  245

seq1  GTTTCTAGACAAATAACCAGGAAGCAAGGG-AAATGGGTTGGCTTCAACT  295
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTTCTAGACAAATAACCAGGAAGCAAGGGAAAATGGGTTGGCTTCAACT  295

seq1  CAGCAAGACCATTAACCCAAAATACTGAAGCATTTTCAGAATGGCCAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGACCATTAACCCAAAATACTGAAGCATTTTCAGAATGGCCAAAA  345

seq1  CATAGAGACTAATTGTCTATAGGGTCCTAAGCCACACATGGGACATCTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGACTAATTGTCTATAGGGTCCTAAGCCACACATGGGACATCTAT  395

seq1  ATTATATGCTGTCCCCCAAGATTCATGGACCTTCTCAGAAGGAGATATAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGCTGTCCCCCAAGATTCATGGACCTTCTCAGAAGGAGATATAG  445

seq1  AAGAGTCAGAAGTTACAAAGGACTGGAGAAAAGCAAAATCTTAAGTTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGAAGTTACAAAGGACTGGAGAAAAGCAAAATCTTAAGTTCTG  495

seq1  GATGGGACTACAGCATCTGTAGTTGTCTGAACAAAACTGAGCCAATCAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACTACAGCATCTGTAGTTGTCTGAACAAAACTGAGCCAATCAAT  545

seq1  TTTCCAGGTTTGGGAAGCTTGTTAGTCTACTGATAGTGGAGAAGCTGCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTTTGGGAAGCTTGTTAGTCTACTGATAGTGGAGAAGCTGCTC  595

seq1  ACATTAGGTGGCTGCTGGGGGAAGTTTTCCTAAGGGTGTAGCCTCTGGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGTGGCTGCTGGGGGAAGTTTTCCTAAGGGTGTAGCCTCTGGAT  645

seq1  AGCAAGTTTCAGTAGACCTTACATGAGGAATATATGGGTAGCACAAATTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTTCAGTAGACCTTACATGAGGAATATATGGGTAGCACAAATTG  695

seq1  GACTCATTGGATCATGGAATAACTAACTAATTTTTCAAAAGTAAATACAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTGGATCATGGAATAACTAACTAATTTTTCAAAAGTAAATACAA  745

seq1  ACTAGGGAAGAGTAGGGACAGCTGGTTCTGTGATGAATTAGAGGGACAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGAAGAGTAGGGACAGCTGGTTCTGTGATGAATTAGAGGGACAGA  795

seq1  GTAAACACGATCAAAACTGATCATAAATATGCATGAAATTCTGAAAACTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACGATCAAAACTGATCATAAATATGCATGAAATTCTGAAAACTC  845

seq1  AATAAAAGATCGTATTAAAAACCCTCTTTCCAGGTTTCCATGACCACCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGATCGTATTAAAAACCCTCTTTCCAGGTTTCCATGACCACCCA  895

seq1  GGCCCTGATTTTCTACACTGTTTTTGCTTGTTTGTGTGTTTGAGACATGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGATTTTCTACACTGTTTTTGCTTGTTTGTGTGTTTGAGACATGA  945

seq1  ACTTGATGTATAACAGACAAAGTTTTGATCACTCTCTCCTATATTCTGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGTATAACAGACAAAGTTTTGATCACTCTCTCCTATATTCTGGT  995

seq1  ATCGCATGCTTCAGCCACCACACAGAGCATCCCTCAGTGTTTTTGCAGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATGCTTCAGCCACCACACAGAGCATCCCTCAGTGTTTTTGCAGTC  1045

seq1  TTAGAATTGCTTTTTGCAGTCTGTCCACCCTGGAGACTGAGGCAGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTGCTTTTTGCAGTCTGTCCACCCTGGAGACTGAGGCAGAATTC  1095


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