BAC Information

Click to search

BAC

Clone NameB6Ng01-183H11
Chromosome9 (Build37)
Map Location 46,333,322 - 46,458,552
singlet/doubletdoublet
Overlap genenone
Upstream geneDscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183H11.bB6Ng01-183H11.g
ACCGA009080GA009081
length1,1521,081
definitionB6Ng01-183H11.b B6Ng01-183H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,457,411 - 46,458,552)(46,333,322 - 46,334,391)
sequence
gaattccacctcctacactaagaacgccccagacactttatccagggtca
ccggcctgagaaactaacagtgcagggcgccccgttaaatttaaatttca
cagaaacaaccaataaagtgattttgtaatatcagtatgtccaagatagc
ggtgccagacacaggctgatggaaaattattgtttgtctcaaattcaaaa
tcaagtgaacaacctgtgttttgtttgggaatgggggaaaaaaaagactg
cttagaaatcgggcagacaagactggaatgagagagcagaggcttaggag
ccagagaaagtgccaggaacccagtgggtggcccccagcccccaggggag
cctgggctcttcctccagcacaacctctcccaacccaacagcaagtgagc
agtgtcttgcagctgtgctaactagaatgcttctccacaaacaacagatt
aattgatttaaaacttttaatgccagatgcttggtggaagcattttaata
atcctcaagtcagaattaatcacgtctcctgatctttaaggagggcagtt
attaaatcctgcagaggcagagggtggggacagggggaggagggtgccca
ttttctcctgagtcctagtcacagctctgctctaattaagagtcccaggg
tccacctgaggatgtgagtagggagccagggcagggacatctctgggtgt
ggcgtgtctaggatggcccctgagagacagacagaaggctacttaatcta
gccttgatttcttgaagctcaaggctgaggcaggataggggaaaaggctc
atccaagagttacctgccaggccaggtcaggccagaggcccagttgaccc
atggaccaaagacccaagatccattccttcagtcccaggtcaggactact
ccaggaatgagacacagattggcaaattcctctcacccactccctttgta
cttccttggaactttcgacaaattgttggataaggaaaagggagagagtc
tcctttcattaaaacccagaggcccctcaactctctgtagctttgaactg
tctgaacctccatattttcccttctttcaagaccggccctcctcttgcca
gcattacctcagtgaattctcctgctctgcatgaatggggtagctccagc
cc
gaattcttaggccctatgagattctccgccctggtgccaggctctgctcc
tcttctctaggccaattggaccagaggcttgggagacaatttctagctgt
tgtgagacaacctgaatcccctgaaaatgtaaagatgttagtgggtgttg
ggagtgggcaaggggctaattttgcacagcccagtacatctccagtgtct
ctggccctgccttcttagacatagcctcacgggtccttcaaagtcaaagg
gtgagattttggaatctgggtttccccacagatgctggctttgttggtca
actcaagaatccagccacaagctgcctttttgcaaaggtctataggaaag
ggccctggtgtattttctgactgctaattaagctttggcagggtaagagg
catcaaggcacgggaacttcacatagtttccatatttagccttttggctc
ctgcatggtggtcacctgcctagcccattctaaagagcatatatcctatc
atgtacacatggcttaccccacgtggcagtggagtggcgtgaatggggcc
atctagctgtatgaccttgacaaagtggtggtccttttttaggccattga
ctgggactgtcatagcaaagagttagaagctaggtgacttagaccaaaca
gaaatatttaattccacagctctcaggggtcaaagcctgaggttgaggtg
caggtaggcgctctatctgaaatctgcagggcaaggcaaggggagccttc
tttgcttcttccaatttcaggtaccccaggaatcccgatttgtggcattg
tatatctttaacctttctaaggtcccctctgtgcctgctttgtccttttt
tttattagaacatcagtcatagtggttaagttttatcctaatgacctcca
ctttagcttgatgacctctctcagaggttctaagtaagggtcagattctg
agggtccaaagagtgggggggtagcctgccaggtgtccagcaaggaggcc
aaatccttgaagaagtgagaataaaaggcttggttcagattgactttacc
accttggactcagaacttaggagcctgatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46457411_46458552
seq2: B6Ng01-183H11.b_45_1196 (reverse)

seq1  GGGCT-GAGCTACCCCATTCCTGCAGAGGCAGAGAAATCACTGAGGCCAT  49
      ||||| |||||||||||||| |||||||   ||||| |||||||||  ||
seq2  GGGCTGGAGCTACCCCATTCATGCAGAGCAGGAGAATTCACTGAGGTAAT  50

seq1  GCT-GCAGGAGGAGGGCC-GTCTGG--AGAGGGGAAAATATGGAGG-TCA  94
      ||| ||| |||||||||| |||| |  ||| ||||||||||||||| |||
seq2  GCTGGCAAGAGGAGGGCCGGTCTTGAAAGAAGGGAAAATATGGAGGTTCA  100

seq1  GACAG-TCAAAGC-ACAGAGAAGTTGA-GGGCCTCCTGGTTTT-ATGAAA  140
      ||||| ||||||| |||||| |||||| |||||||  |||||| ||||||
seq2  GACAGTTCAAAGCTACAGAG-AGTTGAGGGGCCTCTGGGTTTTAATGAAA  149

seq1  GGGGACTCTCTCCCTTTTCCTTATCCAACAATTTGTCGAAAGTTCCAAGG  190
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCTCTCCCTTTTCCTTATCCAACAATTTGTCGAAAGTTCCAAGG  199

seq1  AAGTACAAAGGGAGTGGGTGAGAGGAATTTGCCAATCTGTGTCTCATTCC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAAGGGAGTGGGTGAGAGGAATTTGCCAATCTGTGTCTCATTCC  249

seq1  TGGAGTAGTCCTGACCTGGGACTGAAGGAATGGATCTTGGGTCTTTGGTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGTCCTGACCTGGGACTGAAGGAATGGATCTTGGGTCTTTGGTC  299

seq1  CATGGGTCAACTGGGCCTCTGGCCTGACCTGGCCTGGCAGGTAACTCTTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTCAACTGGGCCTCTGGCCTGACCTGGCCTGGCAGGTAACTCTTG  349

seq1  GATGAGCC-TTTCCCCTATCCTGCCTCAGCCTTGAGCTTCAAGAAATCAA  389
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCCTTTTCCCCTATCCTGCCTCAGCCTTGAGCTTCAAGAAATCAA  399

seq1  GGCTAGATTAAGTAGCCTTCTGTCTGTCTCTCAGGGGCCATCCTAGACAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGATTAAGTAGCCTTCTGTCTGTCTCTCAGGGGCCATCCTAGACAC  449

seq1  GCCACACCCAGAGATGTCCCTGCCCTGGCTCCCTACTCACATCCTCAGGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCAGAGATGTCCCTGCCCTGGCTCCCTACTCACATCCTCAGGT  499

seq1  GGACCCTGGGACTCTTAATTAGAGCAGAGCTGTGACTAGGACTCAGGAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGGGACTCTTAATTAGAGCAGAGCTGTGACTAGGACTCAGGAGA  549

seq1  AAATGGGCACCCTCCTCCCCCTGTCCCCACCCTCTGCCTCTGCAGGATTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCACCCTCCTCCCCCTGTCCCCACCCTCTGCCTCTGCAGGATTT  599

seq1  AATAACTGCCCTCCTTAAAGATCAGGAGACGTGATTAATTCTGACTTGAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGCCCTCCTTAAAGATCAGGAGACGTGATTAATTCTGACTTGAG  649

seq1  GATTATTAAAATGCTTCCACCAAGCATCTGGCATTAAAAGTTTTAAATCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTAAAATGCTTCCACCAAGCATCTGGCATTAAAAGTTTTAAATCA  699

seq1  ATTAATCTGTTGTTTGTGGAGAAGCATTCTAGTTAGCACAGCTGCAAGAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTGTTGTTTGTGGAGAAGCATTCTAGTTAGCACAGCTGCAAGAC  749

seq1  ACTGCTCACTTGCTGTTGGGTTGGGAGAGGTTGTGCTGGAGGAAGAGCCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCACTTGCTGTTGGGTTGGGAGAGGTTGTGCTGGAGGAAGAGCCC  799

seq1  AGGCTCCCCTGGGGGCTGGGGGCCACCCACTGGGTTCCTGGCACTTTCTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCCCTGGGGGCTGGGGGCCACCCACTGGGTTCCTGGCACTTTCTC  849

seq1  TGGCTCCTAAGCCTCTGCTCTCTCATTCCAGTCTTGTCTGCCCGATTTCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTAAGCCTCTGCTCTCTCATTCCAGTCTTGTCTGCCCGATTTCT  899

seq1  AAGCAGTCTTTTTTTTCCCCCATTCCCAAACAAAACACAGGTTGTTCACT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCTTTTTTTTCCCCCATTCCCAAACAAAACACAGGTTGTTCACT  949

seq1  TGATTTTGAATTTGAGACAAACAATAATTTTCCATCAGCCTGTGTCTGGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGAATTTGAGACAAACAATAATTTTCCATCAGCCTGTGTCTGGC  999

seq1  ACCGCTATCTTGGACATACTGATATTACAAAATCACTTTATTGGTTGTTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTATCTTGGACATACTGATATTACAAAATCACTTTATTGGTTGTTT  1049

seq1  CTGTGAAATTTAAATTTAACGGGGCGCCCTGCACTGTTAGTTTCTCAGGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATTTAAATTTAACGGGGCGCCCTGCACTGTTAGTTTCTCAGGC  1099

seq1  CGGTGACCCTGGATAAAGTGTCTGGGGCGTTCTTAGTGTAGGAGGTGGAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACCCTGGATAAAGTGTCTGGGGCGTTCTTAGTGTAGGAGGTGGAA  1149

seq1  TTC  1142
      |||
seq2  TTC  1152

seq1: chr9_46333322_46334391
seq2: B6Ng01-183H11.g_63_1143

seq1  GAATTCTTAGGCCCTATGAGATTCTCCGCCCTGGTGCCAGGCTCTGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGCCCTATGAGATTCTCCGCCCTGGTGCCAGGCTCTGCTCC  50

seq1  TCTTCTCTAGGCCAATTGGACCAGAGGCTTGGGAGACAATTTCTAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTAGGCCAATTGGACCAGAGGCTTGGGAGACAATTTCTAGCTGT  100

seq1  TGTGAGACAACCTGAATCCCCTGAAAATGTAAAGATGTTAGTGGGTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACAACCTGAATCCCCTGAAAATGTAAAGATGTTAGTGGGTGTTG  150

seq1  GGAGTGGGCAAGGGGCTAATTTTGCACAGCCCAGTACATCTCCAGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGCAAGGGGCTAATTTTGCACAGCCCAGTACATCTCCAGTGTCT  200

seq1  CTGGCCCTGCCTTCTTAGACATAGCCTCACGGGTCCTTCAAAGTCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTGCCTTCTTAGACATAGCCTCACGGGTCCTTCAAAGTCAAAGG  250

seq1  GTGAGATTTTGGAATCTGGGTTTCCCCACAGATGCTGGCTTTGTTGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTTTGGAATCTGGGTTTCCCCACAGATGCTGGCTTTGTTGGTCA  300

seq1  ACTCAAGAATCCAGCCACAAGCTGCCTTTTTGCAAAGGTCTATAGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAATCCAGCCACAAGCTGCCTTTTTGCAAAGGTCTATAGGAAAG  350

seq1  GGCCCTGGTGTATTTTCTGACTGCTAATTAAGCTTTGGCAGGGTAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGTGTATTTTCTGACTGCTAATTAAGCTTTGGCAGGGTAAGAGG  400

seq1  CATCAAGGCACGGGAACTTCACATAGTTTCCATATTTAGCCTTTTGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGGCACGGGAACTTCACATAGTTTCCATATTTAGCCTTTTGGCTC  450

seq1  CTGCATGGTGGTCACCTGCCTAGCCCATTCTAAAGAGCATATATCCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGTGGTCACCTGCCTAGCCCATTCTAAAGAGCATATATCCTATC  500

seq1  ATGTACACATGGCTTACCCCACGTGGCAGTGGAGTGGCGTGAATGGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACATGGCTTACCCCACGTGGCAGTGGAGTGGCGTGAATGGGGCC  550

seq1  ATCTAGCTGTATGACCTTGACAAAGTGGTGGTCCTTTTTTAGGCCATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCTGTATGACCTTGACAAAGTGGTGGTCCTTTTTTAGGCCATTGA  600

seq1  CTGGGACTGTCATAGCAAAGAGTTAGAAGCTAGGTGACTTAGACCAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTGTCATAGCAAAGAGTTAGAAGCTAGGTGACTTAGACCAAACA  650

seq1  GAAATATTTAATTCCACAGCTCTCAGGGGTCAAAGCCTGAGGTTGAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTAATTCCACAGCTCTCAGGGGTCAAAGCCTGAGGTTGAGGTG  700

seq1  CAGGTAGGCGCTCTATCTGAAATCTGCAGGGCAAGGCAAGGGGAGCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGCGCTCTATCTGAAATCTGCAGGGCAAGGCAAGGGGAGCCTTC  750

seq1  TTTGCTTCTTCCAATTTCAGGTACCCCAGGAATCCCGATTTGTGGCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTTCCAATTTCAGGTACCCCAGGAATCCCGATTTGTGGCATTG  800

seq1  TATATCTTTAACCTTTCTAAGGTCCCCTCTGTGCCTGCTTTGTCCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTAACCTTTCTAAGGTCCCCTCTGTGCCTGCTTTGTCCTTTTT  850

seq1  TTTATTAGAACATCAGTCATAGTGGTTAAGTTTTATCCTAATGACC-CCA  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTATTAGAACATCAGTCATAGTGGTTAAGTTTTATCCTAATGACCTCCA  900

seq1  C-TTAGCTTGATGACCTCTCTCAGAGGTTCTAAGTAA-GGTCAGATTCTG  947
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTAGCTTGATGACCTCTCTCAGAGGTTCTAAGTAAGGGTCAGATTCTG  950

seq1  A-GGTCC-AAGAGTGGGGGG--AGCCTG-CAGGTGTCCAGGCAGGAGGGC  992
      | ||||| ||||||||||||  |||||| |||||||||||  |||||| |
seq2  AGGGTCCAAAGAGTGGGGGGGTAGCCTGCCAGGTGTCCAGCAAGGAGGCC  1000

seq1  AAATCC-TGAAGAGGTGAGAATAAAA-GCTTGGTTCAGATTGACTTTACC  1040
      |||||| |||||| |||||||||||| |||||||||||||||||||||||
seq2  AAATCCTTGAAGAAGTGAGAATAAAAGGCTTGGTTCAGATTGACTTTACC  1050

seq1  CACCTGGAC-CAG-ACTTAGGGAGCCTGATGC  1070
        | ||||| ||| ||||| ||||||||||||
seq2  ACCTTGGACTCAGAACTTA-GGAGCCTGATGC  1081