BAC Information

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BAC

Clone NameB6Ng01-183L24
Chromosome9 (Build37)
Map Location 106,940,408 - 107,016,090
singlet/doubletdoublet
Overlap geneDock3
Upstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183L24.bB6Ng01-183L24.g
ACCGA009297GA009298
length1,208977
definitionB6Ng01-183L24.b B6Ng01-183L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,940,408 - 106,941,593)(107,015,114 - 107,016,090)
sequence
gaattctctctcccagctctttcagtttagttgctatgcttcatgtctgg
caatccctggagacagatgctcaccacttagcacctctctcatgataact
ggccaggtgcttgaaaactggcaagtagccccaaggttgtcctacagtgt
acatcctgcagattttaggaaatctaatatttcctcctagagtcatttct
taacttagatcgcttagctttatttttcaagttcctccagtttccccggc
acattatcacagatagagcaaacatgctcaaagggtttgtttcataaaag
caatgagagcccagtgccatggcctccatattcatttttattttctgctt
tcctcttctcttcaacaaaatcttactgttcatcaacacaggagaaacta
aagagcagagctactttggtggcatcagaacatgtctgtaacaaatgcag
ggtcttcttacaatgttcccagcccttgcccttttactttttcaacaaat
tgtcactgactttcatcatgtttttagagctggaatccagcacatccttt
tccagggtagagctgggtgattctgccatatgccctcctaaaccagccag
gtatatcctggggtcaacatccagtgccctggctttgtcaggtcatccct
gcttgcatagcaacttacctttaagattccaccaagactcacacactgct
gcacttcacccaacctactcacccacccagaccaccacacccttctccag
gtctagtccattgactctgactctcccctgcatacactctctccaaccag
acagatgtaatctggaccccatatcctgtgcctaggcctagtctggctag
tcctgcttgcacaataaaccaattcttggactccctctgggacccactcc
acctacctctcaatccatattctaacttcacaacctctcacaccacacct
atcttcttcacacaggcagatctaccccagacatttcaggcttgggacca
gaagacaacatccttgtattaccagttcagttcttctggttcacctgact
tcatgttcaccccaaagctattttcctatattaaggctcacttggccttg
cacattcttcttttcttccccaaacttgctctattcttatatccattctt
tagaacaaagggagttccacatggcctcagatctcaattggcaatatgac
caatatga
gaattctagtggcaggttgagtttcttcttctctgctgtcttagatttag
aatgacccacagaaacagttaccacggacacacatcacacatcaccctca
ccagagtatattcttagtaaaaacaaaataggaagtctccctaagacaga
ctagaactgttgtgtctgtattaacttggagatatcaggaaggtctagtt
cgtgaaggcaacaacaacagaggcgaagcttgtcatgcttaccaataccc
tttcctgtacaaagagtaaaaagctgaaggacctactgagctaactttag
gttttcttaaagcctcagctagcctgtggaggaaaagggcagtgctcccc
ttctgtaaataccctgtctaattttgtcagagctgacaagtttcttacca
cagttttcttgggagggggctctcagcctgtatccgttatggcattataa
tcctaagccaagggctgctggtctgagaagagtttattttctaggaaggt
ggctattggagggtttgagcaaatagtttatctgtatgccttgttgcttc
ctcccaggtcctctgttttacctcaaaatgcaagaaatctgattaagtat
ggaccattctaacttttagccacatttcactatcacacatcgtttattgg
agttaaaacggtgttacaataaaatattagttctctgtggagtgaagtga
taagaagtgccttagcctggggcacactgccattactgcccttgaaaaac
atccagcaagaagcttcatgcctggggctcctggcacttgcactgctttg
ggacaggagcttcagctccctttgtgtacagacaacagtaagcacctagc
tagtgccccttcccccatccctaccatccctctgagcctcagggaaagtg
ataggaggtgaaaggaggatagaaagaaagagtgactaaaagatggcaca
tttgttagacgatgagagagagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106940408_106941593
seq2: B6Ng01-183L24.b_49_1256

seq1  GAATTCTCTCTCCCAGCTCTTTCAGTTTAGTTGCTATGCTTCATGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCCAGCTCTTTCAGTTTAGTTGCTATGCTTCATGTCTGG  50

seq1  CAATCCCTGGAGACAGATGCTCACCACTTAGCACCTCTCTCATGATAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTGGAGACAGATGCTCACCACTTAGCACCTCTCTCATGATAACT  100

seq1  GGCCAGGTGCTTGAAAACTGGCAAGTAGCCCCAAGGTTGTCCTACAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTGCTTGAAAACTGGCAAGTAGCCCCAAGGTTGTCCTACAGTGT  150

seq1  ACATCCTGCAGATTTTAGGAAATCTAATATTTCCTCCTAGAGTCATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGCAGATTTTAGGAAATCTAATATTTCCTCCTAGAGTCATTTCT  200

seq1  TAACTTAGATCGCTTAGCTTTATTTTTCAAGTTCCTCCAGTTTCCCCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGATCGCTTAGCTTTATTTTTCAAGTTCCTCCAGTTTCCCCGGC  250

seq1  ACATTATCACAGATAGAGCAAACATGCTCAAAGGGTTTGTTTCATAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCACAGATAGAGCAAACATGCTCAAAGGGTTTGTTTCATAAAAG  300

seq1  CAATGAGAGCCCAGTGCCATGGCCTCCATATTCATTTTTATTTTCTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAGCCCAGTGCCATGGCCTCCATATTCATTTTTATTTTCTGCTT  350

seq1  TCCTCTTCTCTTCAACAAAATCTTACTGTTCATCAACACAGGAGAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTCTTCAACAAAATCTTACTGTTCATCAACACAGGAGAAACTA  400

seq1  AAGAGCAGAGCTACTTTGGTGGCATCAGAACATGTCTGTAACAAATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGAGCTACTTTGGTGGCATCAGAACATGTCTGTAACAAATGCAG  450

seq1  GGTCTTCTTACAATGTTCCCAGCCCTTGCCCTTTTACTTTTTCAACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTTACAATGTTCCCAGCCCTTGCCCTTTTACTTTTTCAACAAAT  500

seq1  TGTCACTGACTTTCATCATGTTTTTAGAGCTGGAATCCAGCACATCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGACTTTCATCATGTTTTTAGAGCTGGAATCCAGCACATCCTTT  550

seq1  TCCAGGGTAGAGCTGGGTGATTCTGCCATATGCCCTCCTAAACCAGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTAGAGCTGGGTGATTCTGCCATATGCCCTCCTAAACCAGCCAG  600

seq1  GTATATCCTGGGGTCAACATCCAGTGCCCTGGCTTTGTCAGGTCATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCTGGGGTCAACATCCAGTGCCCTGGCTTTGTCAGGTCATCCCT  650

seq1  GCTTGCATAGCAACTTACCTTTAAGATTCCACCAAGACTCACACACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATAGCAACTTACCTTTAAGATTCCACCAAGACTCACACACTGCT  700

seq1  GCACTTCACCCAACCTACTCACCCACCCAGACCACCACACCCTTCTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCACCCAACCTACTCACCCACCCAGACCACCACACCCTTCTCCAG  750

seq1  GTCTAGTCCATTGACTCTGACTCTCCCCTGCATACACTCTCTCCAACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTCCATTGACTCTGACTCTCCCCTGCATACACTCTCTCCAACCAG  800

seq1  ACAGATGTAATCTGGACCCCATATCCTGTGCCTAGGCCTAGTCTGGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTAATCTGGACCCCATATCCTGTGCCTAGGCCTAGTCTGGCTAG  850

seq1  TCCTGCTTGCACAAT-AACCAATTCTTGGACTCCCTCTGGGACCCACTCC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGCACAATAAACCAATTCTTGGACTCCCTCTGGGACCCACTCC  900

seq1  ACCTACCTCTCAATCCATATTCTAACTTCACAACCTCTCACACCACACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTCTCAATCCATATTCTAACTTCACAACCTCTCACACCACACCT  950

seq1  ATCTTCTTCACACAGGCAGATCTACCCCAGACATTTCAGGCTT-GGACCA  998
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTTCTTCACACAGGCAGATCTACCCCAGACATTTCAGGCTTGGGACCA  1000

seq1  GAAGAC-ACATCC-TGTA-TACCAGTTCAGTTCTTCT-GTTCACCTGACT  1044
      |||||| |||||| |||| |||||||||||||||||| ||||||||||||
seq2  GAAGACAACATCCTTGTATTACCAGTTCAGTTCTTCTGGTTCACCTGACT  1050

seq1  TCATG-TCACCC--AAGCTA-TTTCCTATATT-AGGCTCAACTTGCC-TG  1088
      ||||| ||||||  |||||| ||||||||||| |||||||  | ||| ||
seq2  TCATGTTCACCCCAAAGCTATTTTCCTATATTAAGGCTCACTTGGCCTTG  1100

seq1  CACA-TCTTCTTTTCTGCCCCAAAC-TGCTCTAT--CTATAT-CATTC-T  1132
      |||| ||||||||||| |||||||| ||||||||   ||||| ||||| |
seq2  CACATTCTTCTTTTCTTCCCCAAACTTGCTCTATTCTTATATCCATTCTT  1150

seq1  TAGAACAAAGGAAG-TCCACATG--CTCAGATCTC-ATTGCAAATATGAA  1178
      ||||||||||| || ||||||||  |||||||||| ||||  ||||||| 
seq2  TAGAACAAAGGGAGTTCCACATGGCCTCAGATCTCAATTGGCAATATGAC  1200

seq1  CAATATGA  1186
      ||||||||
seq2  CAATATGA  1208

seq1: chr9_107015114_107016090
seq2: B6Ng01-183L24.g_70_1046 (reverse)

seq1  TCTCCCTCTCTCTCATCGTCTAACAAATGTGCCATCTTTTAGTCACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCTCTCATCGTCTAACAAATGTGCCATCTTTTAGTCACTCTT  50

seq1  TCTTTCTATCCTCCTTTCACCTCCTATCACTTTCCCTGAGGCTCAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATCCTCCTTTCACCTCCTATCACTTTCCCTGAGGCTCAGAGGG  100

seq1  ATGGTAGGGATGGGGGAAGGGGCACTAGCTAGGTGCTTACTGTTGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGGGATGGGGGAAGGGGCACTAGCTAGGTGCTTACTGTTGTCTGT  150

seq1  ACACAAAGGGAGCTGAAGCTCCTGTCCCAAAGCAGTGCAAGTGCCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGGAGCTGAAGCTCCTGTCCCAAAGCAGTGCAAGTGCCAGGAG  200

seq1  CCCCAGGCATGAAGCTTCTTGCTGGATGTTTTTCAAGGGCAGTAATGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCATGAAGCTTCTTGCTGGATGTTTTTCAAGGGCAGTAATGGCA  250

seq1  GTGTGCCCCAGGCTAAGGCACTTCTTATCACTTCACTCCACAGAGAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCCAGGCTAAGGCACTTCTTATCACTTCACTCCACAGAGAACTA  300

seq1  ATATTTTATTGTAACACCGTTTTAACTCCAATAAACGATGTGTGATAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTGTAACACCGTTTTAACTCCAATAAACGATGTGTGATAGTG  350

seq1  AAATGTGGCTAAAAGTTAGAATGGTCCATACTTAATCAGATTTCTTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGCTAAAAGTTAGAATGGTCCATACTTAATCAGATTTCTTGCAT  400

seq1  TTTGAGGTAAAACAGAGGACCTGGGAGGAAGCAACAAGGCATACAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTAAAACAGAGGACCTGGGAGGAAGCAACAAGGCATACAGATAA  450

seq1  ACTATTTGCTCAAACCCTCCAATAGCCACCTTCCTAGAAAATAAACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGCTCAAACCCTCCAATAGCCACCTTCCTAGAAAATAAACTCTT  500

seq1  CTCAGACCAGCAGCCCTTGGCTTAGGATTATAATGCCATAACGGATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACCAGCAGCCCTTGGCTTAGGATTATAATGCCATAACGGATACAG  550

seq1  GCTGAGAGCCCCCTCCCAAGAAAACTGTGGTAAGAAACTTGTCAGCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGCCCCCTCCCAAGAAAACTGTGGTAAGAAACTTGTCAGCTCTG  600

seq1  ACAAAATTAGACAGGGTATTTACAGAAGGGGAGCACTGCCCTTTTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAGACAGGGTATTTACAGAAGGGGAGCACTGCCCTTTTCCTCC  650

seq1  ACAGGCTAGCTGAGGCTTTAAGAAAACCTAAAGTTAGCTCAGTAGGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGCTGAGGCTTTAAGAAAACCTAAAGTTAGCTCAGTAGGTCCT  700

seq1  TCAGCTTTTTACTCTTTGTACAGGAAAGGGTATTGGTAAGCATGACAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTTACTCTTTGTACAGGAAAGGGTATTGGTAAGCATGACAAGC  750

seq1  TTCGCCTCTGTTGTTGTTGCCTTCACGAACTAGACCTTCCTGATATCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTCTGTTGTTGTTGCCTTCACGAACTAGACCTTCCTGATATCTCC  800

seq1  AAGTTAATACAGACACAACAGTTCTAGTCTGTCTTAGGGAGACTTCCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATACAGACACAACAGTTCTAGTCTGTCTTAGGGAGACTTCCTAT  850

seq1  TTTGTTTTTACTAAGAATATACTCTGGTGAGGGTGATGTGTGATGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTACTAAGAATATACTCTGGTGAGGGTGATGTGTGATGTGTGT  900

seq1  CCGTGGTAACTGTTTCTGTGGGTCATTCTAAATCTAAGACAGCAGAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGTAACTGTTTCTGTGGGTCATTCTAAATCTAAGACAGCAGAGAAG  950

seq1  AAGAAACTCAACCTGCCACTAGAATTC  977
      |||||||||||||||||||||||||||
seq2  AAGAAACTCAACCTGCCACTAGAATTC  977