BAC Information

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BAC

Clone NameB6Ng01-184P07
Chromosome9 (Build37)
Map Location 109,952,208 - 110,073,795
singlet/doubletdoublet
Overlap geneMtap4, Dhx30, Smarcc1
Upstream geneScotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, LOC100049540
Downstream geneRn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184P07.bB6Ng01-184P07.g
ACCGA010198GA010199
length288978
definitionB6Ng01-184P07.b B6Ng01-184P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,073,508 - 110,073,795)(109,952,208 - 109,953,177)
sequence
ttttctttcttttctttcttttttttttttttttttttaagattttattt
gtcttacacatatcgtatgtataagtgcactgttgctgtctttggacaca
ccagaagagggcatcggatcccactacagatggttgtgagccaccatgtg
gttgctaggaaaatcctaggaaagctgttccaagtttctctccttgactt
cagatcaagctacaaacatcttaccctttcttcccgctcttcttgcggga
ctctgtggctgtgggaggaggaggagaaggggaaggtt
gaattcttattcagtggtgcagaaaggctggtcagaaatgagaccttggc
tttcccagcagaacacttccatttatttatttatttatttatttatttat
ttatttatttatttatttatttatttatttggacctgtccataaaatgag
ggactaaggttacaggagctgttgttacagcatcctatgtacacatttcc
atgtccttgcagtactggttttatagaaaacttttaagggattccgcaaa
tgggataatttcttttagtgagttagattttgagagttagcttttctttt
tttcttttctattaaatagatattgaaagtaggtcttaaatggcatgttt
tgtgtgtgatggtggttactttgtctttttttttttcctttttttcttta
ctagtagggaagcctaagtcacaataatttgactctctggagcaagtttc
tgtggcacttgtttctgtgggcattcttgctttagacatttgatggcact
cagccattgtgtagccatcatgttcagacatactgctacctgaggtgagg
tggcaactaaacatactggcctgagaactcatgttttaaaaaacttcatg
ggaatctgagttctagaactcagtaatccagagagacttgcacataaagg
atgcacagggatttcagcagtgctctggatccagcacatttgttctcaaa
ccaaagatagataggtctggttttctttctttaagttgaggcagggtctt
agtgcatttcctatgctggccacttgccttggcattctgagtccttatag
ggatgtatatactcctccctgtagggatgtataccaccagtttggctatc
agaaaagcatcctttttaggattctttgatagagtatttcacagggagcc
ctgtgttgggacaggtagtgagttacaagccctatgaacaagccagcttt
tgtttccagccggtgcactctacatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110073508_110073795
seq2: B6Ng01-184P07.b_43_330 (reverse)

seq1  AACCTTCCCCTTCTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCCCTTCTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGAAG  50

seq1  AGCGGGAAGAAAGGGTAAGATGTTTGTAGCTTGATCTGAAGTCAAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGAAGAAAGGGTAAGATGTTTGTAGCTTGATCTGAAGTCAAGGAGA  100

seq1  GAAACTTGGAACAGCTTTCCTAGGATTTTCCTAGCAACCACATGGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGGAACAGCTTTCCTAGGATTTTCCTAGCAACCACATGGTGGCT  150

seq1  CACAACCATCTGTAGTGGGATCCGATGCCCTCTTCTGGTGTGTCCAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTGTAGTGGGATCCGATGCCCTCTTCTGGTGTGTCCAAAGA  200

seq1  CAGCAACAGTGCACTTATACATACGATATGTGTAAGACAAATAAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAGTGCACTTATACATACGATATGTGTAAGACAAATAAAATCTT  250

seq1  AAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAGAAAA  288
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAGAAAA  288

seq1: chr9_109952208_109953177
seq2: B6Ng01-184P07.g_68_1045

seq1  GAATTCTTATTCAGTGGTGCAGAAAGGCTGGTCAGAAATGAGACCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCAGTGGTGCAGAAAGGCTGGTCAGAAATGAGACCTTGGC  50

seq1  TTTCCCAGCAGAACACTTCCATTTATTTATTTATTTATTTATTTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGCAGAACACTTCCATTTATTTATTTATTTATTTATTTATTTAT  100

seq1  TTATTTATTTATTTATTTATTTATTTATTTGGACCTGTCCATAAAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTGGACCTGTCCATAAAATGAG  150

seq1  GGACTAAGGTTACAGGAGCTGTTGTTACAGCATCCTATGTACACATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAGGTTACAGGAGCTGTTGTTACAGCATCCTATGTACACATTTCC  200

seq1  ATGTCCTTGCAGTACTGGTTTTATAGAAAACTTTTAAGGGATTCCGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTGCAGTACTGGTTTTATAGAAAACTTTTAAGGGATTCCGCAAA  250

seq1  TGGGATAATTTCTTTTAGTGAGTTAGATTTTGAGAGTTAGCTTTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAATTTCTTTTAGTGAGTTAGATTTTGAGAGTTAGCTTTTCTTTT  300

seq1  TTTCTTTTCTATTAAATAGATATTGAAAGTAGGTCTTAAATGGCATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTATTAAATAGATATTGAAAGTAGGTCTTAAATGGCATGTTT  350

seq1  TGTGTGTGATGGTGGTTACTTTGTCTTTTTTTTTTTCCTTTTTTTCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGATGGTGGTTACTTTGTCTTTTTTTTTTTCCTTTTTTTCTTTA  400

seq1  CTAGTAGGGAAGCCTAAGTCACAATAATTTGACTCTCTGGAGCAAGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGGGAAGCCTAAGTCACAATAATTTGACTCTCTGGAGCAAGTTTC  450

seq1  TGTGGCACTTGTTTCTGTGGGCATTCTTGCTTTAGACATTTGATGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACTTGTTTCTGTGGGCATTCTTGCTTTAGACATTTGATGGCACT  500

seq1  CAGCCATTGTGTAGCCATCATGTTCAGACATACTGCTACCTGAGGTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTGTGTAGCCATCATGTTCAGACATACTGCTACCTGAGGTGAGG  550

seq1  TGGCAACTAAACATACTGGCCTGAGAACTCATGTTTTAAAAAACTTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTAAACATACTGGCCTGAGAACTCATGTTTTAAAAAACTTCATG  600

seq1  GGAATCTGAGTTCTAGAACTCAGTAATCCAGAGAGACTTGCACATAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGAGTTCTAGAACTCAGTAATCCAGAGAGACTTGCACATAAAGG  650

seq1  ATGCACAGGGATTTCAGCAGTGCTCTGGATCCAGCACATTTGTTCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGGGATTTCAGCAGTGCTCTGGATCCAGCACATTTGTTCTCAAA  700

seq1  CCAAAGATAGATAGGTCTGGTTTTCTTTCTTTAAGTTGAGGCAGGGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATAGATAGGTCTGGTTTTCTTTCTTTAAGTTGAGGCAGGGTCTT  750

seq1  AGTGCATTTCCTATGCTGGCCACTTGCCTTGGCATTCTGAGTCCTTATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTTCCTATGCTGGCCACTTGCCTTGGCATTCTGAGTCCTTATAG  800

seq1  GGATGTATATACTCC-CCCTGTAGGGATGTATACCACCAGTTTGGCTATC  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGATGTATATACTCCTCCCTGTAGGGATGTATACCACCAGTTTGGCTATC  850

seq1  AG-AAAGCATCCTTTTTAGGATTC-TTGATAGAGTATTTCACA-GGAG-C  895
      || ||||||||||||||||||||| |||||||||||||||||| |||| |
seq2  AGAAAAGCATCCTTTTTAGGATTCTTTGATAGAGTATTTCACAGGGAGCC  900

seq1  CTGTGTTGGGACAGGTAGTGAGTTACAAGCCCTATGACAAAGCCAGCTTT  945
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTGTGTTGGGACAGGTAGTGAGTTACAAGCCCTATGAACAAGCCAGCTTT  950

seq1  --GTTCCAG-CGGTGCACTCTACATTTT  970
         |||||| ||||||||||||||||||
seq2  TGTTTCCAGCCGGTGCACTCTACATTTT  978