BAC Information

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BAC

Clone NameB6Ng01-185B22
Chromosome10 (Build37)9 (Build37)
Map Location 31,739,307 - 31,740,42218,505,486 - 18,505,863
singlet/doubletsingletsinglet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185B22.bB6Ng01-185B22.g
ACCGA010316GA010317
length1,113299
definitionB6Ng01-185B22.b B6Ng01-185B22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,739,307 - 31,740,422)(18,505,486 - 18,505,863)
sequence
gaattcttttcagtcaccagatctctaaatatagtgtagatttggttaag
gcttcctgctctaggtcttatgttggggttgccaactcagtgggaaagga
gtaaagtgtggatgtcagacaccagacctcagctaagacaaaggtgagga
aaactgctcacttctttggtatagccttgcacttagaaagagagcatcct
gctcttctgtattctgtctgctttggatcattgctgttcttcattggcaa
taacccaaatgaaccagtttcctgaaggtgactgagccactatgaaagtt
acagttttgtgacatgtcagcttaagaccagtggccctgtgaactgacct
gaatttattctttggaacctggcgaagaaggaataaccacattcttttgg
tttaagtcatcaatactagtatgattacacaatcaaagttccccaagata
ttctggctatttctctagtctcacttctgtgtctcattcactcttagagt
gtgctttattggatgataaggaaaactgtcattctgtgtgaagttagacc
aagtaattagcagtaaacagttaatatataatgaagagaagatgtatgtc
ttaatgagcttatggagaataaaattctgcagcccacaacatggatggtt
taggtaaggcttattaaggataataccaatggtagagagtacattagagc
gaaatagaacaatctggaagcatagaagcggagcaaaaaataaagaaaga
aattaaaagcagaagaagaaaaagtaaggaacaaaagccattatagctat
aatgtccctatcctcatcttgtttcttctctctgctccattttctccttg
tttgtttctttttccccagttcatatttatttcatatgcagatatacctt
tgttccaatacttccaaagctattcccaaaatcctatgctatattatctc
taaaagttatttttaagagaaccctggtgttagtgggtattgacattgat
aatcattataataccatggcaacagatgtcttaggaatacataagagcaa
aagttttttatgttaaatgcaaacatatattcttttattgtaagaaaact
gaagtctacttaa

aaggtttgaaatcattttcttctctgttccttgttaataaaacttgtatt
attttaatatatataaataaaaccattctattttattaattaatttttgt
tgtgcatttgtatatatacattttatgtgtatatatacatttatatagta
tgtattttttatgacagtcacctgtattatcttctgttttgttcctcctg
ctaaattcaagctgtgttccatgtgtgtgtatatgtgcatgtgtttgtgt
ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31739307_31740422
seq2: B6Ng01-185B22.b_43_1155

seq1  GAATTCTTTTCAGTCACCAGATCTCTAAATATAGTGTAGATTTGGTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAGTCACCAGATCTCTAAATATAGTGTAGATTTGGTTAAG  50

seq1  GCTTCCTGCTCTAGGTCTTATGTTGGGGTTGCCAACTCAGTGGGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGCTCTAGGTCTTATGTTGGGGTTGCCAACTCAGTGGGAAAGGA  100

seq1  GTAAAGTGTGGATGTCAGACACCAGACCTCAGCTAAGACAAAGGTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGTGGATGTCAGACACCAGACCTCAGCTAAGACAAAGGTGAGGA  150

seq1  AAACTGCTCACTTCTTTGGTATAGCCTTGCACTTAGAAAGAGAGCATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTCACTTCTTTGGTATAGCCTTGCACTTAGAAAGAGAGCATCCT  200

seq1  GCTCTTCTGTATTCTGTCTGCTTTGGATCATTGCTGTTCTTCATTGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGTATTCTGTCTGCTTTGGATCATTGCTGTTCTTCATTGGCAA  250

seq1  TAACCCAAATGAACCAGTTTCCTGAAGGTGACTGAGCCACTATGAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAAATGAACCAGTTTCCTGAAGGTGACTGAGCCACTATGAAAGTT  300

seq1  ACAGTTTTGTGACATGTCAGCTTAAGACCAGTGGCCCTGTGAACTGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGTGACATGTCAGCTTAAGACCAGTGGCCCTGTGAACTGACCT  350

seq1  GAATTTATTCTTTGGAACCTGGCGAAGAAGGAATAACCACATTCTTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTCTTTGGAACCTGGCGAAGAAGGAATAACCACATTCTTTTGG  400

seq1  TTTAAGTCATCAATACTAGTATGATTACACAATCAAAGTTCCCCAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCATCAATACTAGTATGATTACACAATCAAAGTTCCCCAAGATA  450

seq1  TTCTGGCTATTTCTCTAGTCTCACTTCTGTGTCTCATTCACTCTTAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTATTTCTCTAGTCTCACTTCTGTGTCTCATTCACTCTTAGAGT  500

seq1  GTGCTTTATTGGATGATAAGGAAAACTGTCATTCTGTGTGAAGTTAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTATTGGATGATAAGGAAAACTGTCATTCTGTGTGAAGTTAGACC  550

seq1  AAGTAATTAGCAGTAAACAGTTAATATATAATGAAGAGAAGATGTATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTAGCAGTAAACAGTTAATATATAATGAAGAGAAGATGTATGTC  600

seq1  TTAATGAGCTTATGGAGAATAAAATTCTGCAGCCCACAACATGGATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGCTTATGGAGAATAAAATTCTGCAGCCCACAACATGGATGGTT  650

seq1  TAGGTAAGGCTTATTAAGGATAATACCAATGGTAGAGAGTACATTAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGGCTTATTAAGGATAATACCAATGGTAGAGAGTACATTAGAGC  700

seq1  GAAATAGAACAATCTGGAAGCATAGAAGCGGAGCAAAAAATAAAGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAACAATCTGGAAGCATAGAAGCGGAGCAAAAAATAAAGAAAGA  750

seq1  AATTAAAAGCAGAAGAAGAAAAAGTAAGGAACAAAAGCCATTATAGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGCAGAAGAAGAAAAAGTAAGGAACAAAAGCCATTATAGCTAT  800

seq1  AATGTCCCTATCCTCATCTTGTTTCTTCTCTCTGCTCCATTTTCTCCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCTATCCTCATCTTGTTTCTTCTCTCTGCTCCATTTTCTCCTTG  850

seq1  TTTGTTTCTTTTTCCCCAGTTCATATTTATTTCATATGCAGATATACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTTTCCCCAGTTCATATTTATTTCATATGCAGATATACCTT  900

seq1  TGTTCCAATACTTCCAAAGCTATT-CCAAAATCCTATGCTATATTATCTC  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTCCAATACTTCCAAAGCTATTCCCAAAATCCTATGCTATATTATCTC  950

seq1  TAAAAGTTATTTTTAAGAGAACCCTGGTGTTAGTGGGTATTGACATTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTATTTTTAAGAGAACCCTGGTGTTAGTGGGTATTGACATTGAT  1000

seq1  AATCATTATAATACCCATGGCAAACAGATGGTCCTAGGAATACATAAGAG  1049
      ||||||||||||| ||||||| ||||||| ||| ||||||||||||||||
seq2  AATCATTATAATA-CCATGGC-AACAGAT-GTCTTAGGAATACATAAGAG  1047

seq1  CAAAAAGTTTTTAATGTAAAATGCAAACATAATATCTTTTATGTAAAGAA  1099
      | |||||||||| |||| |||||||||||||   ||||||||   |||||
seq2  C-AAAAGTTTTTTATGTTAAATGCAAACATATATTCTTTTATTGTAAGAA  1096

seq1  AACTGAAGTCTACTTAA  1116
      |||||||||||||||||
seq2  AACTGAAGTCTACTTAA  1113


seq1: chr9_18505486_18505863
seq2: B6Ng01-185B22.g_178_366 (reverse)

seq1  CTCTCTCTCTCTCACACACACACACACACACACACACACACATACACAAA  50
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  CTCTCTCTCACTCACACACACACACACACACACACACACACACACACAAA  50

seq1  TACACACACAAACACACATACACAATCAGAGGACAACTTTTGTGTCAGTT  100
       ||| |||||  |||| |||||||  ||  | |||          |||  
seq2  CACAAACACATGCACATATACACACACATGGAACA----------CAG--  88

seq1  CCTGTCTTTCTCAGGAGGGTTCCAAGGACTGACGTTAGCTCATCAGGTTG  150
      | ||  |||  |||||||                                
seq2  CTTGAATTTAGCAGGAGG--------------------------------  106

seq1  CATAGCAAGTCCTTTTATACTGAGACAGTGAATTATCTCACCAGTCATTC  200
                                                        
seq2  --------------------------------------------------  106

seq1  ACAAACACACACACACCCAACACAGAGCATTAAAATTTTAAATTCACCTA  250
         ||            ||| ||||                         
seq2  ---AA------------CAAAACAG-------------------------  116

seq1  ACTCCTAAGATTATTTGTACCCCTAGATAACAGTGACAAAGTTCCTATTA  300
            ||||| |    |||    || | || || | |||          
seq2  ------AAGATAA----TAC----AGGTGACTGTCATAAA----------  142

seq1  TGCCAAATGGTATACATACATACATACATACCATATATATATATATACAT  350
                           | |||||||| ||||| || |||||| | 
seq2  ---------------------AAATACATACTATATAAATGTATATATA-  170

seq1  ATACATACCCACATATAATGTATATATA  378
               |||||| ||||||||||||
seq2  ---------CACATAAAATGTATATATA  189


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