BAC Information

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BAC

Clone NameB6Ng01-185H12
Chromosome9 (Build37)
Map Location 109,587,438 - 109,588,422
singlet/doubletsinglet
Overlap geneC85627
Upstream genePrkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik
Downstream geneEG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185H12.bB6Ng01-185H12.g
ACCGA010569GA010570
length1,2191,003
definitionB6Ng01-185H12.b B6Ng01-185H12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaattgaggaatctggaagggctcagaaacacctaaagaactg
ttcagtatcctcagtcatcaggaaaatgcaaaccaaaatgaccttgagat
tccacctcacacaagtcataatggctaagataaaaaactcaggtgatagc
agatgctggcaagtatgtggagaaagaggaacgtgcctcctccattgctg
gtgggaatacaagctggaacaaccactctggaaatcagtctggtgttttt
tcagaaaattggacatagtaccacctgaggacccagctataccactcctg
ggcatatatccagaagatgttccaacatgtaataaggacacatgctccac
tatttcatagcagccatatttataaaacccaggagctagaagcagcccag
atatccctcaacagagaaatggataccgaaaatgttgtatatttacacaa
tggagtactattctcaatcactcttaactatagaattaatgtgtttctca
tggtaaacaatataatcaactatcatattcatatggtcacattttaaact
ttttaaaatttgtcttttaaatgagaagttaaaatatttctcatgctgcc
aaatatatatatatatatatatatatatatatttataatatatctgttgt
tatatatataatacacaattacatacatatatgtatgatatatattatat
atacatatatgtgtatatataatatgtgtaatatatacatatatgtataa
aatatattctgtctctcagaagaaaatatcccctgttgctcctctgctcc
acaaatggtttttgtcttccttgatctcatctttaaagagtgttaatgct
gttaacagattaatctatttgtaaacttataagctccagtatacccaatc
agttccaccttctcatggaccacacagactccatctagataagtacacct
gccaatcaatggcctaagtttctacctgttaactattccaggggctggga
ctgctcttactgttacctgggaatgggaagtctcttcacccccaaccacc
aaaacataagtgtttcaaatggtacacttggaagaaaattttcttttttt
ccccaaaaggcatttgattttatctctcgtccattataaacaataactgg
tcagcactttccttaaaccaagtgttttattccaaaatctctaacctcct
caagggtatcaagctgttc
gaattcctgaaccttttcgctttcactcagtcttggtttttttcattggt
attttcttctccttcaagatttggaaaggactttatcctgtttgtctggc
ttgtatgatgtgctgaaagatctattgtcattggggtctgtcattctata
gatcaggggtaatgcccctgtgattttaagctttttatttaatttctaga
aactcgttcttggtgaatctagtataaatagttggagcttaatgtatttg
agctagatttgctttgactctcaggagacttaaaatttgggcaaggtact
ttgtcttccttgtgctggggtagtgaatacagggtaggcctgacacttaa
gctcttgtgtgatccattagaggtttctgtcagtactaaagaatggaata
attgacatgtgccccaccgtgccccctagtggggaggggatgcactgcta
cattcactgtgtatcaagtttggctaagggaacagaactcagttttaaaa
taaacattttttcctttttaaatattttttattaggtattttcctcattt
acatttccaatgttatcccaaaagtcccccataccctctccccaccctcc
taaccacctactcccactttttggccctggcgttcccctgtactggggca
tataaagtttgcatgaccaatgggcctctcttttccagtgatggccgact
aggccatctttttgatacatatgcagctagagacaagagctccagggtac
tggttagttcatattgtttgttccacgtatagggttgcagacccctttag
ctccttgggtactttctctagctcctcattgggggccctgtgatccatcc
aatagctgacttgtgagcatccagtttctgtgttttgctaggcccttggc
atagtcctcacaagagagcttatattcaagtgttccttttcagcaaaatt
cttgctagtgtatggaatgggttgtcaagcgtttggaagcctaatttatg
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109587438_109588422
seq2: B6Ng01-185H12.g_63_1065 (reverse)

seq1  TCCCAT-AATTA-GCCTCCAAACGC-TGACA--CCATTGCATACACTAGC  45
      |||||| ||||| || ||||||||| |||||  ||||| |||||||||||
seq2  TCCCATAAATTAGGCTTCCAAACGCTTGACAACCCATTCCATACACTAGC  50

seq1  AAG-ATTTTGCTGAAA--GGACCCT--GATAT-AGCTCTCTTGTGA-GAC  88
      ||| ||||||||||||  | || ||   |||| ||||||||||||| |||
seq2  AAGAATTTTGCTGAAAAGGAACACTTGAATATAAGCTCTCTTGTGAGGAC  100

seq1  TATGCC-AGGGCCTAGC-AAACACAG-AACTGGATGCTCAC-AGTCAGCT  134
      |||||| |||||||||| |||||||| |||||||||||||| ||||||||
seq2  TATGCCAAGGGCCTAGCAAAACACAGAAACTGGATGCTCACAAGTCAGCT  150

seq1  ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAA  184
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTGGATGGATCACAGGGCCCCCAAT-GAGGAGCTAGAGAAAGTACCCAA  199

seq1  GGAGCTAAAGGGGTCTGCAACCCTATACGTGGAAC-AACAATATGAACTA  233
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGCTAAAGGGGTCTGCAACCCTATACGTGGAACAAACAATATGAACTA  249

seq1  ACCAGTACCCTGGAGCTCTTGTCTCTAGCTGCATATGTATC-AAAAGATG  282
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCAGTACCCTGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAAGATG  299

seq1  GCCTAGTCGGCCATCACTGG-AAAGAGAGGCCCATTGGTCATGCAAACTT  331
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCTAGTCGGCCATCACTGGAAAAGAGAGGCCCATTGGTCATGCAAACTT  349

seq1  TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGTAGGTG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGTAGGTG  399

seq1  GTTAGGAGGGTGGGGAGAGGGTATGGGGGACTTTTGGGATAACATTGGAA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGGGTGGGGAGAGGGTATGGGGGACTTTTGGGATAACATTGGAA  449

seq1  ATGTAAATGAGGAAAATACCTAATAAAAAATATTTAAAAAGGAAAAAATG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGAGGAAAATACCTAATAAAAAATATTTAAAAAGGAAAAAATG  499

seq1  TTTATTTTAAAACTGAGTTCTGTTCCCTTAGCCAAACTTGATACACAGTG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAAACTGAGTTCTGTTCCCTTAGCCAAACTTGATACACAGTG  549

seq1  AATGTAGCAGTGCATCCCCTCCCCACTAGGGGGCACGGTGGGGCACATGT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCAGTGCATCCCCTCCCCACTAGGGGGCACGGTGGGGCACATGT  599

seq1  CAATTATTCCATTCTTTAGTACTGACAGAAACCTCTAATGGATCACACAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTCCATTCTTTAGTACTGACAGAAACCTCTAATGGATCACACAA  649

seq1  GAGCTTAAGTGTCAGGCCTACCCTGTATTCACTACCCCAGCACAAGGAAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAAGTGTCAGGCCTACCCTGTATTCACTACCCCAGCACAAGGAAG  699

seq1  ACAAAGTACCTTGCCCAAATTTTAAGTCTCCTGAGAGTCAAAGCAAATCT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTACCTTGCCCAAATTTTAAGTCTCCTGAGAGTCAAAGCAAATCT  749

seq1  AGCTCAAATACATTAAGCTCCAACTATTTATACTAGATTCACCAAGAACG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAATACATTAAGCTCCAACTATTTATACTAGATTCACCAAGAACG  799

seq1  AGTTTCTAGAAATTAAATAAAAAGCTTAAAATCACAGGGGCATTACCCCT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGAAATTAAATAAAAAGCTTAAAATCACAGGGGCATTACCCCT  849

seq1  GATCTATAGAATGACAGACCCCAATGACAATAGATCTTTCAGCACATCAT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATAGAATGACAGACCCCAATGACAATAGATCTTTCAGCACATCAT  899

seq1  ACAAGCCAGACAAACAGGATAAAGTCCTTTCCAAATCTTGAAGGAGAAGA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGACAAACAGGATAAAGTCCTTTCCAAATCTTGAAGGAGAAGA  949

seq1  AAATACCAATGAAAAAAACCAAGACTGAGTGAAAGCGAAAAGGTTCAGGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAATGAAAAAAACCAAGACTGAGTGAAAGCGAAAAGGTTCAGGA  999

seq1  ATTC  985
      ||||
seq2  ATTC  1003