BAC Information

Click to search

BAC

Clone NameB6Ng01-185N08
Chromosome9 (Build37)
Map Location 98,917,344 - 99,057,578
singlet/doubletdoublet
Overlap geneGm1123, Pik3cb, LOC100040442
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim
Downstream geneLOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185N08.bB6Ng01-185N08.g
ACCGA010837GA010838
length881228
definitionB6Ng01-185N08.b B6Ng01-185N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,056,708 - 99,057,578)(98,917,344 - 98,917,571)
sequence
gaattcttttcttgaaatgtggatttcttttttaaaggtgtacaccacca
ctcctggtctcataattctttactgaggaatagcttaagatatcagttcc
gttttaaataacagggagctgaagaagtggcccagcagttcagagtactt
gttgctcttgcagaagacccaagttcattaatcggtactccacggccatc
tataactccagtgccagaggctcccgtgccttgtggtctccaagggcact
cttctggaggcttcttggagacgtctggtctccaagagcatgtgatacac
atgtatacatgcaggcaacacagttacatgcataaaataaacacatctaa
aaaacttaaaaaatagaaccgatatctgagcaaggaaatatttgggttat
aaaattgtgctccaatataagttccttaaatagtggtgggtatggcagag
aatacaagaaataaaattaacctaaaagtttattatttacatacatacac
acacacacacacacacacacacacacacacacacacacacacacacaaag
tatccaaagtatgccttgaacttcaacttgctgctagaatcgatgctcca
acacacccaagttgtgaatagatttctttttcttctttgagacagtcatg
ttatatagataaggctggccctaaagtcataaaggcttaattgcctgtgt
ctactactaagtgctggcatcgaagtgtgtgctactatacccatttgtga
ataatttttgcttttcaagacagttttctctatgtaacagccctggctgt
gctttgaattcattctgtagactaggcttggcctcagacacagagaatct
aacctgccccttgatttctggaagtgctggg
atcatcttctcgggggagaggctggcatggtaacttgcactggcagcgag
ctgagagcttacatcctgctcaggcagcagagcatgcactaacagcaatg
tggtactgtggcttcctcaaaggtatactctctccatcacagccacacct
cctaaacctacaccaacagtgggaccaactgagtgcagaaaactcttatc
ttaagtactgggtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99056708_99057578
seq2: B6Ng01-185N08.b_48_928 (reverse)

seq1  CCCAGCACT--CAG-AATC-AGGGGCAGG-TAGA-TCTCTGTGTCTGAGG  44
      |||||||||  ||| |||| ||||||||| |||| |||||||||||||||
seq2  CCCAGCACTTCCAGAAATCAAGGGGCAGGTTAGATTCTCTGTGTCTGAGG  50

seq1  CC-AGCCTAGTCTACAGAATGAATTC-AAGCACAGCCAGGGCTGTTACAT  92
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAAGCCTAGTCTACAGAATGAATTCAAAGCACAGCCAGGGCTGTTACAT  100

seq1  AGAG-AAACTGTCTTGAAAAGCAAAAATTATTCAC-AATGGGTATAGTAG  140
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGAAAACTGTCTTGAAAAGCAAAAATTATTCACAAATGGGTATAGTAG  150

seq1  CACACACTTCGATGCCAGCACTTAGTAGTAGACACAGGCAATTAAGCCTT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTTCGATGCCAGCACTTAGTAGTAGACACAGGCAATTAAGCCTT  200

seq1  TATGACTTTAGGGCCAGCCTTATCTATATAACATGACTGTCTCAAAGAAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTAGGGCCAGCCTTATCTATATAACATGACTGTCTCAAAGAAG  250

seq1  AAAAAGAAATCTATTCACAACTTGGGTGTGTTGGAGCATCGATTCTAGCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAATCTATTCACAACTTGGGTGTGTTGGAGCATCGATTCTAGCA  300

seq1  GCAAGTTGAAGTTCAAGGCATACTTTGGATACTTTGTGTGTGTGTGTGTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGAAGTTCAAGGCATACTTTGGATACTTTGTGTGTGTGTGTGTG  350

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTAAATAAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTAAATAAT  400

seq1  AAACTTTTAGGTTAATTTTATTTCTTGTATTCTCTGCCATACCCACCACT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTAGGTTAATTTTATTTCTTGTATTCTCTGCCATACCCACCACT  450

seq1  ATTTAAGGAACTTATATTGGAGCACAATTTTATAACCCAAATATTTCCTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGAACTTATATTGGAGCACAATTTTATAACCCAAATATTTCCTT  500

seq1  GCTCAGATATCGGTTCTATTTTTTAAGTTTTTTAGATGTGTTTATTTTAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATATCGGTTCTATTTTTTAAGTTTTTTAGATGTGTTTATTTTAT  550

seq1  GCATGTAACTGTGTTGCCTGCATGTATACATGTGTATCACATGCTCTTGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAACTGTGTTGCCTGCATGTATACATGTGTATCACATGCTCTTGG  600

seq1  AGACCAGACGTCTCCAAGAAGCCTCCAGAAGAGTGCCCTTGGAGACCACA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACGTCTCCAAGAAGCCTCCAGAAGAGTGCCCTTGGAGACCACA  650

seq1  AGGCACGGGAGCCTCTGGCACTGGAGTTATAGATGGCCGTGGAGTACCGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGGGAGCCTCTGGCACTGGAGTTATAGATGGCCGTGGAGTACCGA  700

seq1  TTAATGAACTTGGGTCTTCTGCAAGAGCAACAAGTACTCTGAACTGCTGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAACTTGGGTCTTCTGCAAGAGCAACAAGTACTCTGAACTGCTGG  750

seq1  GCCACTTCTTCAGCTCCCTGTTATTTAAAACGGAACTGATATCTTAAGCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCTTCAGCTCCCTGTTATTTAAAACGGAACTGATATCTTAAGCT  800

seq1  ATTCCTCAGTAAAGAATTATGAGACCAGGAGTGGTGGTGTACACCTTTAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAGTAAAGAATTATGAGACCAGGAGTGGTGGTGTACACCTTTAA  850

seq1  AAAAGAAATCCACATTTCAAGAAAAGAATTC  871
      |||||||||||||||||||||||||||||||
seq2  AAAAGAAATCCACATTTCAAGAAAAGAATTC  881

seq1: chr9_98917344_98917571
seq2: B6Ng01-185N08.g_74_301

seq1  ATCATCTTCTCGGGGGAGAGGCTGGCATGGTAACTTGCACTGGCAGCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTCTCGGGGGAGAGGCTGGCATGGTAACTTGCACTGGCAGCGAG  50

seq1  CTGAGAGCTTACATCCTGCTCAGGCAGCAGAGCATGCACTAACAGCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCTTACATCCTGCTCAGGCAGCAGAGCATGCACTAACAGCAATG  100

seq1  TGGTACTGTGGCTTCCTCAAAGGTATACTCTCTCCATCACAGCCACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGTGGCTTCCTCAAAGGTATACTCTCTCCATCACAGCCACACCT  150

seq1  CCTAAACCTACACCAACAGTGGGACCAACTGAGTGCAGAAAACTCTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCTACACCAACAGTGGGACCAACTGAGTGCAGAAAACTCTTATC  200

seq1  TTAAGTACTGGGTGTGTGTGTGTGTGTG  228
      ||||||||||||||||||||||||||||
seq2  TTAAGTACTGGGTGTGTGTGTGTGTGTG  228