BAC Information

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BAC

Clone NameB6Ng01-186H03
Chromosome9 (Build37)
Map Location 36,781,777 - 36,968,307
singlet/doubletdoublet
Overlap genePknox2, LOC100042545
Upstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1
Downstream gene1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186H03.bB6Ng01-186H03.g
ACCGA011287GA011288
length1,09297
definitionB6Ng01-186H03.b B6Ng01-186H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,967,222 - 36,968,307)(36,781,777 - 36,781,873)
sequence
gaattctatgagcctcaaaagtaggcagagatgcacagaacacctcattc
aaaggtctatttctgtttattacagcatcagacactgccctgggtgctgg
aattaaagaagactgagtcctactctcacagaaatgatcattctggtctc
agtaaaggaatcgatagccaccaaacaaaaccagcccactctgccagaga
gacccttgcatttgcttcccacccagtctccatgtctgagcctggattgg
aagttactgtcgtgagtgaggtccacagcgcatgtcccatttccatgtct
tctgtcatttgactttccacctagctggacccatctcttgtcattagaat
agtgtctgttcactccttaaccttttcctaggcaaagccttctctattct
tccccagcaccaagcctacactgttctcagcccctcttctccagacggta
acagcaggagcttctatggtcagctatggcttcagatgtcgaagacacag
aattgtaaccttggttcgtgtgtggggacaagatgtgttggggagccaca
gtgactgaggctgagtctcggttctcccacattctttctgttagccttgg
gagagaagaaggagccctccaagcgtcagtcttctcatgtgggaaatatg
atggaagtgagatggccatcagctgcctgaaggctgtacatcattggcac
aggctctctttccctcattttagagctctcattctggctaagggagaaag
ggaaatggagtcatcaagtcagggatctaccacggcccttaaagcccatc
aaggaaacgggggaagggataatcatacaaaacactgttgatttctgcaa
ctaaccccccccccccgccccacatctttcatcagacagtgagtgcctcc
agaaaagggtcacatgactgcactctatttagccctgtgcctgtgtccct
agcaccaggcatggtgttgtgtagatagtagctgctcagttaatgtctgc
aataaataagcctttgcctctcttgatcatggcttgatgcttataagccc
acccaacattgtctacatgccccaacttaaccagtcattcat
tgtggtccctgggatggatgcttggacttagcacagagaacaagataggg
acaagtctgaggccagaggtgagtggagaaggatgagggaggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36967222_36968307
seq2: B6Ng01-186H03.b_40_1131 (reverse)

seq1  ATGAA--ACTGGTTAGGTTGGGGCATGTAGACAATGTTGGGTGGGC-TAT  47
      |||||  |||||||| |||||||||||||||||||||||||||||| |||
seq2  ATGAATGACTGGTTAAGTTGGGGCATGTAGACAATGTTGGGTGGGCTTAT  50

seq1  AGCCATCAAGCCATGATCAAGAGAAGC-AAGGCTTATTTA-TGCAGACAT  95
      |  ||||||||||||||||||||| || |||||||||||| |||||||||
seq2  AAGCATCAAGCCATGATCAAGAGAGGCAAAGGCTTATTTATTGCAGACAT  100

seq1  TAACTGAGCAGCTACTATCTACACAACACCATGCCTGGTGCTAGGGACAC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGCAGCTACTATCTACACAACACCATGCCTGGTGCTAGGGACAC  150

seq1  AGGCACAGGGCTAAATAGAGTGCAGTCATGTGACCCTATTCTGGAGGCAC  195
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGCACAGGGCTAAATAGAGTGCAGTCATGTGACCCTTTTCTGGAGGCAC  200

seq1  TCACTGTCTGATGGAAGATGTGGGGCGGGGGGGGGGGGTTAGTTGCAGAA  245
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTGATGAAAGATGTGGGGCGGGGGGGGGGGGTTAGTTGCAGAA  250

seq1  ATCAACAGTG-TTTGTATGATTATCCCTTCCCCCGTTTCCTTGATGGGCT  294
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGTGTTTTGTATGATTATCCCTTCCCCCGTTTCCTTGATGGGCT  300

seq1  TTAAGGGCCGTGGTAGATCCCTGACTTGATGACTCCATTTCCCTTTCTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCCGTGGTAGATCCCTGACTTGATGACTCCATTTCCCTTTCTCC  350

seq1  CTTAGCCAGAATGAGAGCTCTAAAATGAGGGAAAGAGAGCCTGTGCCAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCAGAATGAGAGCTCTAAAATGAGGGAAAGAGAGCCTGTGCCAAT  400

seq1  GATGTACAGCCTTCAGGCAGCTGATGGCCATCTCACTTCCATCATATTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACAGCCTTCAGGCAGCTGATGGCCATCTCACTTCCATCATATTTC  450

seq1  CCACATGAGAAGACTGACGCTTGGAGGGCTCCTTCTTCTCTCCCAAGGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGAAGACTGACGCTTGGAGGGCTCCTTCTTCTCTCCCAAGGCT  500

seq1  AACAGAAAGAATGTGGGAGAACCGAGACTCAGCCTCAGTCACTGTGGCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGAATGTGGGAGAACCGAGACTCAGCCTCAGTCACTGTGGCTC  550

seq1  CCCAACACATCTTGTCCCCACACACGAACCAAGGTTACAATTCTGTGTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACATCTTGTCCCCACACACGAACCAAGGTTACAATTCTGTGTCT  600

seq1  TCGACATCTGAAGCCATAGCTGACCATAGAAGCTCCTGCTGTTACCGTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACATCTGAAGCCATAGCTGACCATAGAAGCTCCTGCTGTTACCGTCT  650

seq1  GGAGAAGAGGGGCTGAGAACAGTGTAGGCTTGGTGCTGGGGAAGAATAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGGGGCTGAGAACAGTGTAGGCTTGGTGCTGGGGAAGAATAGA  700

seq1  GAAGGCTTTGCCTAGGAAAAGGTTAAGGAGTGAACAGACACTATTCTAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTTGCCTAGGAAAAGGTTAAGGAGTGAACAGACACTATTCTAAT  750

seq1  GACAAGAGATGGGTCCAGCTAGGTGGAAAGTCAAATGACAGAAGACATGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGATGGGTCCAGCTAGGTGGAAAGTCAAATGACAGAAGACATGG  800

seq1  AAATGGGACATGCGCTGTGGACCTCACTCACGACAGTAACTTCCAATCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGACATGCGCTGTGGACCTCACTCACGACAGTAACTTCCAATCCA  850

seq1  GGCTCAGACATGGAGACTGGGTGGGAAGCAAATGCAAGGGTCTCTCTGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGACATGGAGACTGGGTGGGAAGCAAATGCAAGGGTCTCTCTGGC  900

seq1  AGAGTGGGCTGGTTTTGTTTGGTGGCTATCGATTCCTTTACTGAGACCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGCTGGTTTTGTTTGGTGGCTATCGATTCCTTTACTGAGACCAG  950

seq1  AATGATCATTTCTGTGAGAGTAGGACTCAGTCTTCTTTAATTCCAGCACC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCATTTCTGTGAGAGTAGGACTCAGTCTTCTTTAATTCCAGCACC  1000

seq1  CAGGGCAGTGTCTGATGCTGTAATAAACAGAAATAGACCTTTGAATGAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGTGTCTGATGCTGTAATAAACAGAAATAGACCTTTGAATGAGG  1050

seq1  TGTTCTGTGCATCTCTGCCTACTTTTGAGGCTCATAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTGCATCTCTGCCTACTTTTGAGGCTCATAGAATTC  1092

seq1: chr9_36781777_36781873
seq2: B6Ng01-186H03.g_70_166

seq1  TGTGGTCCCTGGGATGGATGCTTGGACTTAGCACAGAGAACAAGATAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCCTGGGATGGATGCTTGGACTTAGCACAGAGAACAAGATAGGG  50

seq1  ACAAGTCTGAGGCCAGAGGTGAGTGGAGAAGGATGAGGGAGGGGGGG  97
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTGAGGCCAGAGGTGAGTGGAGAAGGATGAGGGAGGGGGGG  97