MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-186J05
Chromosome	9 (Build37)
Map Location	15,386,953 - 15,387,779
singlet/doublet	singlet
Overlap gene	Ccdc67
Upstream gene	Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612
Downstream gene	LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Amotl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75723 MGI:1922973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665374 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665374 MGI:3644538
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Piwil4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330890 MGI:3041167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fut4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14345 MGI:95594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700012B09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69325 MGI:1916575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd49 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56503 MGI:1930842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mre11a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17535 MGI:1100512
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040259 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040259
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 376 ESTs, 5 Proteins

name	Gpr83 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14608 MGI:95712
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Folr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64931 MGI:1929185
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Panx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55991 MGI:1860055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hephl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244698 MGI:2685355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 4 Proteins

name	2200002K05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69137 MGI:1916387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crsp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234959 MGI:2182585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4931406C07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70984 MGI:1918234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Josd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75316 MGI:1922566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	5830418K08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319675 MGI:2442521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040375 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 28 ESTs

name	LOC100039955 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	BC017612 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170748 MGI:3039636
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc67 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234964 MGI:2443026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665461 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665461
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins pseudo : _no_value

name	LOC330891 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:330891
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Slc36a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234967 MGI:2442595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtnr1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244701 MGI:2181726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fat3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270120 MGI:2444314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amotl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487106 GeneID:75723 MGI:1922973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiomotin-like 1 transcript_id : NM_001081395.1

name	EG665374 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94385991 GeneID:665374 MGI:3644538
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, EG665374 transcript_id : XM_976463.1

name	Piwil4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:52138555 GeneID:330890 MGI:3041167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : piwi-like homolog 4 (Drosophila) transcript_id : NM_177905.3

name	Fut4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802526 GeneID:14345 MGI:95594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fucosyltransferase 4 transcript_id : NM_010242.3

name	1700012B09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142355293 GeneID:69325 MGI:1916575
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700012B09 gene transcript_id : NM_029306.2

name	Ankrd49 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803047 GeneID:56503 MGI:1930842
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 49 transcript_id : NM_019683.3

name	Mre11a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41056098 GeneID:17535 MGI:1100512
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meiotic recombination 11 homolog A (S. cerevisiae) transcript_id : NM_018736.2

name	LOC100040259 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259835 GeneID:100040259
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 376 ESTs, 5 Proteins product : similar to macrophage migration inhibitory factor transcript_id : XM_001474201.1

name	Gpr83 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361503 GeneID:14608 MGI:95712
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 83 transcript_id : NM_010287.2

name	Folr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803239 GeneID:64931 MGI:1929185
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : folate receptor 4 (delta) transcript_id : NM_176807.3

name	Folr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12584981 GeneID:64931 MGI:1929185
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : folate receptor 4 (delta) transcript_id : NM_022888.1

name	Panx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86262133 GeneID:55991 MGI:1860055
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pannexin 1 transcript_id : NM_019482.2

name	Hephl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259829 GeneID:244698 MGI:2685355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 4 Proteins product : hephaestin-like 1 transcript_id : XM_146812.7

name	2200002K05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348823 GeneID:69137 MGI:1916387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2200002K05 gene transcript_id : NM_026955.2

name	Crsp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450344 GeneID:234959 MGI:2182585
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cofactor required for Sp1 transcriptional activation, subunit 6 transcript_id : NM_144933.1

name	4931406C07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130919 GeneID:70984 MGI:1918234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4931406C07 gene transcript_id : NM_133732.2

name	Josd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312925 GeneID:75316 MGI:1922566
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Josephin domain containing 3 transcript_id : NM_029248.1

name	Josd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802775 GeneID:75316 MGI:1922566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Josephin domain containing 3 transcript_id : NM_027261.2

name	5830418K08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802648 GeneID:319675 MGI:2442521
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5830418K08 gene transcript_id : NM_176976.3

name	LOC100040375 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259837 GeneID:100040375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 28 ESTs product : similar to KIAA1731 protein transcript_id : XM_001474439.1

name	BC017612 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865950 GeneID:170748 MGI:3039636
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC017612 transcript_id : NM_133214.2

name	Ccdc67 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778964 GeneID:234964 MGI:2443026
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 67 transcript_id : NM_181816.2

name	Slc36a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802265 GeneID:234967 MGI:2442595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 36 (proton/amino acid symporter), member 4 transcript_id : NM_172289.4

name	Mtnr1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:25014089 GeneID:244701 MGI:2181726
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melatonin receptor 1B transcript_id : NM_145712.1

name	Fat3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249104 GeneID:270120 MGI:2444314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FAT tumor suppressor homolog 3 (Drosophila) transcript_id : NM_001080814.1

name	Amotl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487107 GeneID:75723 MGI:1922973
definition	GO_component : GO:0005923 - tight junction [Evidence ISS] [Evidence IDA] GO_function : GO:0042802 - identical protein binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : angiomotin-like 1 protein_id : NP_001074864.1

name	EG665374 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94385992 GeneID:665374 MGI:3644538
definition	codon_start : 1 product : hypothetical protein protein_id : XP_981557.1

name	Piwil4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52138556 CCDS:CCDS22824.1 GeneID:330890 MGI:3041167
definition	GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 product : piwi-like 4 protein_id : NP_808573.2

name	Fut4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753920 CCDS:CCDS22825.1 GeneID:14345 MGI:95594
definition	GO_component : GO:0009986 - cell surface [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008417 - fucosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006486 - protein amino acid glycosylation [Evidence IEA] codon_start : 1 note : stage-specific embryonic antigen 1; alpha (1,3) fucosyltransferase; galactoside 3-L-fucosyltransferase; 3-fucosyl-N-acetyl-lactosamine; alpha (1,3) fucosyltransferase, myeloid specific; alpha 1,3-fucosyltransferase; 3-fucosyl-N-acetyl-lactosamine epitope product : fucosyltransferase 4 protein_id : NP_034372.1

name	1700012B09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312964 GeneID:69325 MGI:1916575
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC69325 protein_id : NP_083582.1

name	Ankrd49 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22165398 CCDS:CCDS22826.1 GeneID:56503 MGI:1930842
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] codon_start : 1 note : fetal globin inducing factor product : globin inducing factor, fetal protein_id : NP_062657.2

name	Mre11a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055282 CCDS:CCDS22827.1 GeneID:17535 MGI:1100512
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA] GO_process : GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : meiotic recombination 11 homolog A protein_id : NP_061206.1

name	LOC100040259 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259836 GeneID:100040259
definition	codon_start : 1 product : similar to macrophage migration inhibitory factor protein_id : XP_001474251.1

name	Gpr83 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753988 CCDS:CCDS22829.1 GeneID:14608 MGI:95712
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : glucocorticoid induced receptor; glucocorticoid-induced receptor product : G protein-coupled receptor 83 protein_id : NP_034417.1

name	Folr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28827784 CCDS:CCDS22830.1 GeneID:64931 MGI:1929185
definition	GO_component : GO:0005624 - membrane fraction [Evidence TAS] GO_function : GO:0005542 - folic acid binding [Evidence TAS]; GO:0008517 - folic acid transporter activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : folate receptor 4 (delta) isoform 2 protein_id : NP_789777.1

name	Folr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12584982 CCDS:CCDS22831.1 GeneID:64931 MGI:1929185
definition	GO_component : GO:0005624 - membrane fraction [Evidence TAS] GO_function : GO:0005542 - folic acid binding [Evidence TAS]; GO:0008517 - folic acid transporter activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : folate receptor 4 (delta) isoform 1 protein_id : NP_075026.1

name	Panx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86262134 CCDS:CCDS22832.1 GeneID:55991 MGI:1860055
definition	GO_component : GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : pannexin 1 protein_id : NP_062355.2

name	Hephl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259830 GeneID:244698 MGI:2685355
definition	codon_start : 1 product : hypothetical protein protein_id : XP_146812.7

name	2200002K05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037147 CCDS:CCDS22833.1 GeneID:69137 MGI:1916387
definition	codon_start : 1 product : hypothetical protein LOC69137 protein_id : NP_081231.1

name	Crsp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450345 CCDS:CCDS22834.1 GeneID:234959 MGI:2182585
definition	GO_component : GO:0000119 - mediator complex [Evidence ISS]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence ISS]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : cofactor required for Sp1 transcriptional activation, subunit 6 (77kD) product : cofactor required for Sp1 transcriptional activation, subunit 6 protein_id : NP_659182.1

name	4931406C07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526926 CCDS:CCDS22835.1 GeneID:70984 MGI:1918234
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC70984 protein_id : NP_598493.1

name	Josd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312926 CCDS:CCDS22836.1 GeneID:75316 MGI:1922566
definition	codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : Josephin domain containing 3 isoform 2 protein_id : NP_083524.1

name	Josd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109240554 GeneID:75316 MGI:1922566
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : Josephin domain containing 3 isoform 3 protein_id : NP_081537.1

name	5830418K08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892809 GeneID:319675 MGI:2442521
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC319675 protein_id : NP_795950.1

name	LOC100040375 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259838 GeneID:100040375
definition	codon_start : 1 product : similar to KIAA1731 protein protein_id : XP_001474489.1

name	BC017612 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865951 CCDS:CCDS22838.1 GeneID:170748 MGI:3039636
definition	codon_start : 1 product : hypothetical protein LOC170748 protein_id : NP_573477.2

name	Ccdc67 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778965 CCDS:CCDS22839.1 GeneID:234964 MGI:2443026
definition	codon_start : 1 product : coiled-coil domain containing 67 protein_id : NP_861537.2

name	Slc36a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982042 CCDS:CCDS22840.1 GeneID:234967 MGI:2442595
definition	codon_start : 1 product : proton/amino acid transporter 4 protein_id : NP_758493.2

name	Mtnr1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25014090 CCDS:CCDS22841.1 GeneID:244701 MGI:2181726
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0008502 - melatonin receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007623 - circadian rhythm [Evidence TAS]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Mel-1b melatonin receptor; MT2 melatonin receptor product : melatonin receptor 1B protein_id : NP_663758.1

name	Fat3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249105 GeneID:270120 MGI:2444314
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : protocadherin Fat3 product : FAT tumor suppressor homolog 3 protein_id : NP_001074283.1

name	LOC100039955 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039955
definition	number : 2 pseudo : _no_value

name	LOC100039955 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039955
definition	number : 1 pseudo : _no_value

name	LOC330891 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:330891
definition	number : 1 pseudo : _no_value

name	LOC665461 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259831 GeneID:665461
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins product : similar to proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 pseudo : _no_value transcript_id : XR_031431.1

clone name	MSMg01-318P16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-507L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390I19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-408G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052A11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-401J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234C22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-104F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117P02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-186J05.b	B6Ng01-186J05.g
ACC	GA011379	GA011380
length	827	1,054
definition	B6Ng01-186J05.b	B6Ng01-186J05.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcagcgtattaccaagtaccgtgcagggtctaaatcgcccatcatt cccttcaggtgtgtgttttctgttctgacagctttgtatcttctatctga aacctgaaagattagcagataaaaggcacgtgtaaaactcatgttaataa accccgttgaggtggtgcaaatacttcctgtggtatgagggaaacaaagt cctcccaccagtcgggttctcttgtgcctcccccctccccccctccccct gtgcccagacctccccctactcccacccccgccttgctccaacctccacc acccccatccctgactctcttccagtttgagcagtgcgaaatttaaaaca ctttaatcatgatttatttttgccctaccaaatctgaaattccatttctc atgtataggaattataatcacaattaagaaaaaccttcttgaaaatactc ttgcccattacacttcttcaatgcccaattaatatttacagtaagcagta tatggctttcggtgtttaattcgttccttctggtattctggccgagttcc ctgtgtgcctatgactttcttttatagttttttcttctttccctgatgtc tgttgtctacctgaatgttgggatgacagacgcatgcctagatgcctggc ctgctcttttgtatatctaagactcatttctacataaaacttttgcttta aaaatacttatttttgtgaattataagatatatgctcattgacaaagtct gggaagcatggtggtattgaagatgaacttgggagtcgttcttgtgctgt tgtccctgaccatcgacagcaggcaac	gaattcttctttcaaggaattgaggaaatgagttggacttttgatgggaa ttatgttgaatctgtatatttcttctggaagatggtcatttttaccatgg taatctaccaatccatgagcaggaacacttgctcaactatgttcatagca gctttatttgtagtagccagaaattggaaataacctagatgtctctcaat caaaaaatggacaatgaaactgtgatacatttacacaatggaatattact cagctattaaaaacaaagacatcatgaaatttgcagggaagacagattga ccaagcaagctcaatcagtcaacaggatcttgagggagggagtgaggatt aaaggaaaaaagagacaattagataatattataacatgaccccagcaatt gctgagaagtgtttattttttccagtctgtttttataccattctaggtac atgcaaagaatagggtcagttctaggtcaaagacaaagtagtcaaggaag aaacaaggataaacaaagtagttaaggaacaaacaaagcataaccaaagg tctcgtgattactgtattcagggactaaacaagatgatcaaggcacaaag aacacattactcagctatatttatcttgagccttgtcctagtccaatgta aatattcttgccaatatccttgaagcagcaccaagagctctccacaatgg atagaactagaaaatatcatcctgagtgaggtaactcagacccagaaagg ctctcatggatatacttacttataagtggatattaaccacaaaatagagt aaaaccatgctacaatcaacagacccaaagaagctagataacagggaggg ctcgaatctcactcagaaggggaaatagacatcagaagtggatgggagag tgaactacatggaagaggggtggaaattagctatgtttggggatgttaga agagagagtgaatgggggcatctctgggtatgagcttgagacctggactg agagtctccaagatccttgtggtgactggacctgatattctaccgtcgtg gatg
quality values	Open. Hide. 62 47 23 38 62 31 14 31 62 62 62 62 47 54 62 62 41 29 62 62 54 62 62 62 62 62 62 59 59 62 62 62 62 62 34 32 28 27 28 28 23 28 32 29 29 43 42 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 51 50 56 43 43 42 56 43 56 59 54 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 10 10 13 10 10 14 16 62 59 62 62 62 62 62 62 62 59 59 62 59 59 59 59 51 59 62 62 62 62 62 59 62 59 59 59 62 59 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 51 51 59 59 59 56 46 49 51 48 48 56 59 59 62 62 62 62 62 62 62 62 59 54 59 62 62 62 62 62 62 62 62 59 59 62 51 43 50 54 43 50 59 43 49 59 56 43 46 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 59 59 59 59 50 59 59 59 51 59 51 46 49 56 54 59 62 62 62 62 62 59 59 59 59 51 50 48 48 56 59 59 62 59 59 59 59 59 59 56 62 62 56 62 62 62 59 62 62 62 59 62 62 59 59 62 59 59 59 41 43 34 43 45 41 24 34 24 36 44 51 51 50 24 59 59 62 56 56 59 59 59 59 59 59 62 62 47 54 56 29 23 21 32 50 38 51 51 62 56 56 56 51 44 44 56 56 56 56 56 62 62 62 62 56 56 62 62 62 56 56 56 56 54 62 62 62 62 56 62 54 62 54 62 62 47 56 39 56 56 39 47 56 38 46 43 31 32 47 62 62 56 62 56 56 56 39 38 32 62 56 62 62 62 62 48 54 52 23 41 46 62 48 15 21 17 9 18 23 46 47 39 47 54 53 47 42 35 31 22 54 50 37 32 32 22 28 32 54 50 54 54 54 54 54 42 48 52 54 54 41 58 58 58 54 30 33 22 17 37 32 54 42 45 53 52 52 46 32 58 26 42 58 50 54 52 54 52 48 37 54 49 38 54 54 52 26 36 50 40 52 37 41 34 31 25 20 27 25 47 38 40 40 32 27 25 15 27 40 37 50 53 50 37 40 36 19 17 47 37 49 41 50 37 41 39 23 37 39 50 42 27 36 35 21 21 39 53 58 18 32 54 42 40 50 46 50 39 42 50 47 49 31 50 9 50 31 33 14 39 19 20 38 35 40 36 40 22 39 31 28 23 33 27 50 41 52 50 50 25 50 50 40 50 44 33 50 37 50 20 16 21 52 39 35 50 32 37 37 32 51 35 19 16 21 33 41 46 39 42 52 40 17 35 25 35 22 37 24 53 49 49 51 52 35 33 45 42 34 25 51 47 20 20 31 42 33 34 21 14 14 33 28 19 37 31 23 37 23 19 10 23 8 18 24 28 13 14 46 25 30 23 19 22 37 34 33 29 27 33 18 18 22 10 9 9 31 31 25 41 21 53 32 43 41 31 18 17 16 39 33 18 9 10 45 26 24 18 45 32 13 31 25 13 16 9 17 15 31 7 14 13 10	Open. Hide. 62 47 51 42 62 62 62 62 62 62 62 62 44 19 18 30 28 21 22 39 43 38 38 32 49 62 56 62 59 62 62 62 62 62 62 62 59 59 62 62 54 54 62 59 59 62 62 62 62 62 59 62 62 59 62 54 62 59 59 59 59 54 43 38 50 50 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 54 59 62 54 49 54 59 62 59 62 62 62 62 59 59 62 59 59 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 54 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 38 49 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 62 46 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 53 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 62 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 41 58 54 58 58 58 54 54 54 58 58 41 54 58 58 45 48 58 58 58 58 54 49 58 58 54 42 58 58 41 54 49 58 58 58 42 52 54 58 58 58 52 58 58 46 43 58 52 58 54 52 54 58 45 42 51 58 58 50 58 53 46 58 50 50 58 51 54 58 58 52 52 51 49 51 53 58 49 54 58 49 51 40 51 50 41 40 51 49 58 40 39 58 48 51 52 39 51 58 49 58 58 30 48 31 51 53 53 53 51 51 53 51 53 53 51 42 50 53 46 51 40 41 50 43 50 46 58 31 51 58 53 53 52 47 50 50 39 47 39 51 58 31 39 50 52 58 53 42 53 42 53 43 36 15 44 53 39 41 52 42 53 52 50 40 50 51 37 53 52 46 24 54 28 27 54 41 53 45 31 28 41 25 54 31 26 42 51 54 44 40 54 29 53 49 39 37 29 34 41 54 33 45 30 33 28 41 33 46 31 42 33 54 36 39 24 34 31 38 53 42 29 26 37 42 39 40 34 32 40 34 52 28 54 52 32 37 40 32 38 29 34 32 52 51 32 21 19 20 31 41 39 40 34 45 25 31 33 34 16 34 29 33 31 31 13 49 27 23 51 38 33 36 31 26 31 39 33 31 27 28 26 29 30 31 23 51 46 35 31 51 35 29 42 33 18 32 25 31 31 31 26 31 22 31 32 24 24 33 33 26 48 46 31 33 47 32 31 32 29 32 26 28 38 31 21 20 33 33 30 26 31 25 14 18 41 47 30 28 15 27 19 32 31 22 21 32 32 23 16 8 25 32 29 30 23 14 36 27 46 48 32 31 26 27 26 46 46 23 31 29 27 29 28 20 28 31 23 36 21 21 48 44 33 32 22 32 32 17 13 18 17 15 5 26 14 25 6 7 7 9 7 7 9 4 14 36 32 31 11 7 6 17 12 18 32 13 21 33 16 6 30 24 26 17 14 10 18 15 32 32 12 14 16 28 24 7 11 15 6 6 17 6 10 17 10 10 12 9 14 25 9 7 5 8 6 16 5 5 6 6 8 8 6 6 9 7 9 8 9 5 4 5 7 7 6 5 3 4 11 20 20 13 11 6 5 5 3 3 3 4 7 13 4 6 3

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_15386953_15387779
seq2: B6Ng01-186J05.b_47_873

seq1  GAATTCAGCGTATTACCAAGTACCGTGCAGGGTCTAAATCGCCCATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGTATTACCAAGTACCGTGCAGGGTCTAAATCGCCCATCATT  50

seq1  CCCTTCAGGTGTGTGTTTTCTGTTCTGACAGCTTTGTATCTTCTATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGGTGTGTGTTTTCTGTTCTGACAGCTTTGTATCTTCTATCTGA  100

seq1  AACCTGAAAGATTAGCAGATAAAAGGCACGTGTAAAACTCATGTTAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAAGATTAGCAGATAAAAGGCACGTGTAAAACTCATGTTAATAA  150

seq1  ACCCCGTTGAGGTGGTGCAAATACTTCCTGTGGTATGAGGGAAACAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTTGAGGTGGTGCAAATACTTCCTGTGGTATGAGGGAAACAAAGT  200

seq1  CCTCCCACCAGTCGGGTTCTCTTGTGCCTCCCCCCTCCCCCCCTCCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACCAGTCGGGTTCTCTTGTGCCTCCCCCCTCCCCCCCTCCCCCT  250

seq1  GTGCCCAGACCTCCCCCTACTCCCACCCCCGCCTTGCTCCAACCTCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGACCTCCCCCTACTCCCACCCCCGCCTTGCTCCAACCTCCACC  300

seq1  ACCCCCATCCCTGACTCTCTTCCAGTTTGAGCAGTGCGAAATTTAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCATCCCTGACTCTCTTCCAGTTTGAGCAGTGCGAAATTTAAAACA  350

seq1  CTTTAATCATGATTTATTTTTGCCCTACCAAATCTGAAATTCCATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCATGATTTATTTTTGCCCTACCAAATCTGAAATTCCATTTCTC  400

seq1  ATGTATAGGAATTATAATCACAATTAAGAAAAACCTTCTTGAAAATACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGGAATTATAATCACAATTAAGAAAAACCTTCTTGAAAATACTC  450

seq1  TTGCCCATTACACTTCTTCAATGCCCAATTAATATTTACAGTAAGCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATTACACTTCTTCAATGCCCAATTAATATTTACAGTAAGCAGTA  500

seq1  TATGGCTTTCGGTGTTTAATTCGTTCCTTCTGGTATTCTGGCCGAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTTCGGTGTTTAATTCGTTCCTTCTGGTATTCTGGCCGAGTTCC  550

seq1  CTGTGTGCCTATGACTTTCTTTTATAGTTTTTTCTTCTTTCCCTGATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCTATGACTTTCTTTTATAGTTTTTTCTTCTTTCCCTGATGTC  600

seq1  TGTTGTCTACCTGAATGTTGGGATGACAGACGCATGCCTAGATGCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTACCTGAATGTTGGGATGACAGACGCATGCCTAGATGCCTGGC  650

seq1  CTGCTCTTTTGTATATCTAAGACTCATTTCTACATAAAACTTTTGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTTGTATATCTAAGACTCATTTCTACATAAAACTTTTGCTTTA  700

seq1  AAAATACTTATTTTTGTGAATTATAAGATATATGCTCATTGACAAAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTATTTTTGTGAATTATAAGATATATGCTCATTGACAAAGTCT  750

seq1  GGGAAGCATGGTGGTA-TGAAGATGAACTTGGGAGTCGTTCTTGTGCTGT  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGAAGCATGGTGGTATTGAAGATGAACTTGGGAGTCGTTCTTGTGCTGT  800

seq1  TGTCCCTGACCATCGACAGCAAGGCACC  827
      |||||||||||||||||||| ||||| |
seq2  TGTCCCTGACCATCGACAGC-AGGCAAC  827

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information